Whole-genome sequencing of a green bush viper reovirus reveals a shared evolutionary history between reptilian and unusual mammalian orthoreoviruses

Archives of Virology

Volumn 159, Issue 1, 2014, Pages 153-158

  Bányai, Krisztián ^a   Borzák, Réka ^a   Ihász, Katalin ^a   Fehér, Eniko ^a   Dán, Ádám ^b   Jakab, Ferenc ^c   Papp, Tibor ^a   Hetzel, Udo ^d   Marschang, Rachel E ^e   Farkas, Szilvia L ^a  

^a INSTITUTE OF EXPERIMENTAL MEDICINE   (Hungary)

^b CENTRAL VETERINARY INSTITUTE   (Hungary)

^c UNIVERSITY OF PÉCS   (Hungary)

^d UNIVERSITY OF HELSINKI   (Finland)

^e UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

Genome sequencing; Phylogenetic analysis; Reoviridae; Reptile

Indexed keywords

ATHERIS SQUAMIGERA; BABOON ORTHOREOVIRUS; MAMMALIA; MAMMALIAN ORTHOREOVIRUSES; ORTHOREOVIRUS; PAPIO; REOVIRIDAE; REPTILIA; VIPERIDAE; VIPERINAE;

VIRUS PROTEIN;

ANIMAL; ARTICLE; CLASSIFICATION; GENETICS; GENOME SIZE; ISOLATION AND PURIFICATION; MAMMAL; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORTHOREOVIRUS; PHYLOGENY; VIPERIDAE; VIROLOGY; VIRUS GENOME;

ANIMALS; EVOLUTION, MOLECULAR; GENOME SIZE; GENOME, VIRAL; MAMMALS; MOLECULAR SEQUENCE DATA; ORTHOREOVIRUS; PHYLOGENY; VIPERIDAE; VIRAL PROTEINS;

EID: 84893759394     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1796-2     Document Type: Article

References (19)

1. Abascal F, Zardoya R, Telford MJ (2010) TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. Nucleic Acids Res 38: W7-W13.
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
3. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
4. Attoui H, Mertens PPC, Becnel J, Belaganahalli S, Bergoin M, Brussaard CP, Chappell JD, Ciarlet M, del Vas M, Dermody TS, Dormitzer PR, Duncan R, Fang Q, Graham R, Guglielmi KM, Harding RM, Hillman B, Makkay A, Marzachì C, Matthijnssens J, Milne RG, Mohd Jaafar F, Mori H, Noordeloos AA, Omura T, Patton JT, Rao S, Maan M, Stoltz D, Suzuki N, Upadhyaya NM, Wei C, Zhou H (2011) Family Reoviridae. In: King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (eds) Virus taxonomy: classification and nomenclature of viruses. Ninth Report of the International Committee on Taxonomy of Viruses. Elselvier, San Diego, pp 541-554.
5. Bányai K, Dandár E, Dorsey KM, Mató T, Palya V (2011) The genomic constellation of a novel avian orthoreovirus strain associated with runting-stunting syndrome in broilers. Virus Genes 42: 82-89.
6. Benavente J, Martínez-Costas J (2007) Avian reovirus: structure and biology. Virus Res 123: 105-119.
7. Clarke P, Tyler KL (2008) Reoviruses: general features. In: Mahy BWJ, van Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Academic Press, New York, pp 382-390.
8. Coombs KM (2008) Reoviruses: molecular biology. In: Mahy BWJ, van Regenmortel MHV (eds) Encyclopedia of virology, 3rd edn. Academic Press, New York, pp 390-399.
9. Dandár E, Borzák R, Bányai K, Farkas LS (2012) Orthoreovirus-caused diseases in reptiles, birds and mammals. Magy Állatorv Lapja 134: 564-573 (in Hungarian).
10. Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ (2008) Viral genome sequencing by random priming methods. BMC Genomics 9: 5.
11. Duncan R, Corcoran J, Shou J, Stoltz D (2004) Reptilian reovirus: a new fusogenic orthoreovirus species. Virology 319: 131-140.
12. Lambden PR, Cooke SJ, Caul EO, Clarke IN (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66: 1817-1822.
13. Lamirande EW, Nichols DK, Owens JW, Gaskin JM, Jacobson ER (1999) Isolation and experimental transmission of a reovirus pathogenic in ratsnakes (Elaphe species). Virus Res 63: 135-141.
14. Lublin A, Goldenberg D, Rosenbluth E, Heller ED, Pitcovski J (2011) Wide-range protection against avian reovirus conferred by vaccination with representatives of four defined genotypes. Vaccine 29: 8683-8688.
15. Nicholas KB, Nicholas HB Jr, Deerfield DW II (1997) GeneDoc: analysis and visualization of genetic variation. Embnet News 4: 14.
16. Palya V, Glávits R, Dobos-Kovács M, Ivanics E, Nagy E, Bányai K, Reuter G, Szucs G, Dán A, Benko M (2003) Reovirus identified as cause of disease in young geese. Avian Pathol 32: 129-138.
17. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
18. Thalmann CM, Cummins DM, Yu M, Lunt R, Pritchard LI, Hansson E, Crameri S, Hyatt A, Wang LF (2010) Broome virus, a new fusogenic Orthoreovirus species isolated from an Australian fruit bat. Virology 402: 26-40.
19. Wellehan JF Jr, Childress AL, Marschang RE, Johnson AJ, Lamirande EW, Roberts JF, Vickers ML, Gaskin JM, Jacobson ER (2009) Consensus nested PCR amplification and sequencing of diverse reptilian, avian, and mammalian orthoreoviruses. Vet Microbiol 133: 34-42.