Association of Tomato leaf curl Joydebpur virus and a betasatellite with leaf curl disease of eggplant

Phytoparasitica

Volumn 42, Issue 1, 2014, Pages 109-120

  Venkataravanappa, V ^a   Lakshminarayana Reddy, C N ^b   Swarnalatha, P ^c   Mahesha, B ^a   Rai, A B ^a   Krishna Reddy, M ^c  

^a INDIAN INSTITUTE OF VEGETABLE RESEARCH   (India)

^b University of Agricultural Sciences B   (India)

^c INDIAN INSTITUTE OF HORTICULTURAL RESEARCH   (India)

Author keywords

Bemisia tabaci; Chilli leaf curl virus (ChiLCuV); Recombination; Solanum melongena; ToLCJoV; Tomato leaf curl Bangladesh betasatellite (ToLCBDB); Whitefly

Indexed keywords

ALEYRODIDAE; BEGOMOVIRUS; BEMISIA TABACI; CHILLI LEAF CURL VIRUS; LYCOPERSICON ESCULENTUM; SOLANUM MELONGENA;

EID: 84893734923     PISSN: 03342123     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12600-013-0345-6     Document Type: Article

References (49)

1. Boulton, M. (2003). Geminiviruses: major threats to world agriculture. The Annals of Applied Biology, 142, 143.
2. Briddon, R. W., Brown, J. K., Moriones, E., Stanley, J., Zerbini, M., Zhou, X., et al. (2008). Recommendations for the classification and nomenclature of the DNA-beta satellites of begomoviruses. Archives of Virology, 153, 763-781.
3. Briddon, R. W., Bull, S. E., Amin, I., Idris, A. M., Mansoor, S., Bedford, I. D., et al. (2003). Diversity of DNA beta: a satellite molecule associated with some monopartite begomoviruses. Virology, 312, 106-121.
4. Briddon, R. W., Bull, S. E., Amin, I., Mansoor, S., Bedford, I. D., Rishi, N., et al. (2004). Diversity of DNA 1; a satellite-like molecule associated with monopartite begomovirus-DNA β complexes. Virology, 324, 462-474.
5. Briddon, R. W., Bull, S. E., Mansoor, S., Amin, I., & Markham, P. G. (2002). Universal primers for the PCR-mediated amplification of DNA beta: A molecule associated with some monopartite begomoviruses. Molecular Biotechnology, 20, 315-318.
6. Briddon, R. W., Mansoor, S., Bedford, I. D., Pinner, M. S., Saunders, K., Stanley, J., et al. (2001). Identification of DNA components required for induction of cotton leaf curl disease. Virology, 285, 234-243.
7. Brown, J. K., Fauquet, C. M., Briddon, R. W., Zerbini, M., Moriones, E., & Navas-Castillo, J. (2011). Geminiviridae, pp. 351-373. In: A. M. Q. King, M. J. Adams, E. B. Carstens, & E. J. Lefkowitz (Eds.), Virus Taxonomy - Ninth Report of the International Committee on Taxonomy of Viruses. London, UK: Associated Press.
8. Bull, S. E., Tsai, W. S., Briddon, R. W., Markham, P. G., Stanley, J., & Green, S. K. (2004). Diversity of begomovirus DNAβ satellites of non-malvaceous plants in east and south east Asia - brief report. Archives of Virology, 149, 1193-1200.
9. Chakraborty, S., Pandey, P. K., Banerjee, M. K., Kalloo, G., & Fauquet, C. M. (2003). Tomato leaf curl Gujarat virus, a new begomovirus species causing a severe leaf curl disease of tomato in Varanasi, India. Phytopathology, 93, 1485-1495.
10. Chowda Reddy, R. V., Colvin, J., Muniyappa, V., & Seal, S. E. (2005). Diversity and distribution of begomoviruses infecting tomato in India. Archives of Virology, 150, 845-867.
11. Cui, X., Li, G., Wang, D., Hu, D., & Zhou, X. (2005). A begomovirus DNA β-encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. Journal of Virology, 79, 10764-10775.
12. Cui, X., Tao, X., Xie, Y., Fauquet, C. M., & Zhou, X. (2004). A DNA β associated with Tomato yellow leaf curl China virus is required for symptom induction. Journal of Virology, 78, 13966-13974.
13. Doyle, J. J., & Doyle, J. L. (1990). Isolation of plant DNA from fresh tissue. Focus, 12, 13-15.
14. Fauquet, C. M., Briddon, R. W., Brown, J. K., Moriones, E., Stanley, J., Zerbini, M., et al. (2008). Geminivirus strain demarcation and nomenclature. Archives of Virology, 153, 783-821.
15. Gopal, P., Pravin Kumar, P., Sinila, B., Jose, J., Yadunandam, A. K., & Usha, R. (2007). Differential roles of C4 and βC1 in mediating suppression of post-transcriptional gene silencing: Evidence for transactivation by the C2 of Bhendi yellow vein mosaic virus, a monopartite begomovirus. Virus Research, 123, 9-18.
16. Green, S. K., Tsai, W. S., Shih, S. L., Rezaian, M. A., & Duangsong, U. (2003). Molecular characterization of a new begomovirus associated with tomato yellow leaf curl and eggplant yellow mosaic diseases in Thailand. Plant Disease, 87, 446-446.
17. Ha, C., Coombs, S., Revill, P., Harding, R., Vu, M., & Dale, J. (2008). Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. Journal of General Virology, 89, 312-326.
18. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids, 41, 95-98.
19. Heyraud, F., Matzeit, V., Kammann, M., Schafer, S., Schell, J., & Gronenborn, B. (1993). Identification of the initiation sequence for viral-strand DNA synthesis of wheat dwarf virus. European Molecular Biology Journal, 12, 4445-4452.
20. Huson, D. H., & Bryant, D. (2006). Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution, 23, 254-267.
21. Khan, J. A. (2000). Detection of tomato leaf curl geminivirus in its vector Bemisia tabaci. Indian Journal of Experimental Biology, 38, 512-515.
22. Kirthi, N., Maiya, S. P., Murthy, M. R. N., & Savithri, H. S. (2002). Evidence for recombination among the tomato leaf curl virus strains/species from Bangalore in India. Archives of Virology, 147, 255-272.
23. Kon, T., Hidayat, S. H., Hase, S., Takahashi, H., & Ikegami, M. (2006). The natural occurrence of two distinct begomoviruses associated with DNAβ and a recombinant DNA in a tomato plant from Indonesia. Phytopathology, 96, 517-525.
24. Kon, T., Kuwabara, K., Hidayat, S. H., & Ikegami, M. (2007). A begomovirus associated with ageratum yellow vein disease in Indonesia: evidence for natural recombination between Tomato leaf curl Java virus and Ageratum yellowvein virus-[Java]. Archives of Virology, 152, 1147-1157.
25. Kumar, Y., Hallan, V., & Zaidi, A. A. (2009). Molecular characterization of a distinct bipartite begomovirus species infecting tomato in India. Virus Genes, 38, 193.
26. Kumari, P., Singh, A. K., Chattopadhyay, B., & Chakraborty, S. (2010). Molecular characterization of a new species of Begomovirus and betasatellite causing leaf curl disease of tomato in India. Virus Research, 152, 19-29.
27. Kumari, P., Singh, A. K., Sharma, V. K., Chattopadhyay, B., & Chakraborty, S. (2011). A novel recombinant tomato-infecting begomovirus capable of transcomplementing heterologous DNA-B components. Archives of Virology, 156, 769-783.
28. Lazarowitz, S. G. (1992). Geminiviruses: Genome and structure and gene function. Critical Reviews in Plant Sciences, 11, 327-349.
29. Martin, D. P., Lemey, P., Lott, M., Vincent, M., Posada, D., & Lefeuvre, P. (2010). RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics, 26, 2462-2463.
30. Padidam, M., Beachy, R. N., & Fauquet, C. M. (1995). Tomato leaf curl geminivirus from India has a bipartite genome and coat protein is not essential for infectivity. Journal of General Virology, 76, 25-35.
31. Pandey, P., Mukhopadhya, S., Naqvi, A. R., Mukherjee, S. K., Shekhawat, G. S., & Choudhury, N. R. (2010). Molecular characterization of two distinct monopartite begomoviruses infecting tomato in India. Virology Journal, 7, 337.
32. Paul, S., Ghosh, R., Das, S., Palit, P., Acharyya, S., Das, A., et al. (2009). First report of Tomato leaf curl Joydebpur virus and associated betasatellite in kenaf (Hibiscus cannabinus) plants showing leaf curl symptoms from southern India. Plant Pathology, 58, 403.
33. Pratap, D., Ashwin, R. K., & Mukherjee, S. K. (2011a). Molecular characterization and infectivity of a Tomato leaf curl New Delhi virus variant associated with newly emerging yellow mosaic disease of eggplant in India. Virology Journal, 8, 305.
34. Pratap, D., Kumar, S., Raj, S. K., & Sharma, A. K. (2011b). Agrobacterium-mediated transformation of eggplant (Solanum melongena L.) using cotyledon explants and coat protein gene of Cucumber mosaic virus. Indian Journal of Biotechnology, 10, 19-24.
35. Raja, P., Reddy, A. V. R., & Allam, U. S. (2006). First report of Alternaria tenuissima causing leaf spot and fruit rot on eggplant (Solanum melongena) in India. Plant Pathology, 55, 579-579.
36. Rojas, M. R., Gilbertson, R. L., Russel, D. R., & Maxwell, D. P. (1993). Use of degenerate primers in the polymerase chain reaction to detect whitefly-transmitted geminiviruses. Plant Disease, 77, 340-347.
37. Saeed, S., Zafar, Y., Randles, J. W., & Rezaian, M. A. (2007). A monopartite begomovirus associated DNA β satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. Journal of General Virology, 88, 2881-2889.
38. Saunders, K., Bedford, I. D., Briddon, R. W., Markham, P. G., Wong, S. M., & Stanley, J. (2000). A unique virus complex causes Ageratum yellow vein disease. Proceedings of the National Academy of Sciences of the USA, 97, 6890-6895.
39. Saunders, K., & Stanley, J. (1999). A nanovirus-like DNA component associated with yellow vein disease of Ageratum conyzoides: evidence for JBC interfamilial recombination between plant DNA viruses. Virology, 264, 142-152.
40. Seal, S. E., Vandenbosch, F., & Jeger, M. J. (2006). Factors influencing begomovirus evolution and their increasing global significance: implications for sustainable control. Critical Reviews in Plant Sciences, 25, 23-46.
41. Shih, S. L., Tsai, W. S., Green, S. K., & Singh, D. (2007). First report of Tomato leaf curl Joydebpur virus infecting chilli in India. Plant Pathology, 56, 341.
42. Singh, A. K., Mishra, K. K., Chattopadhyay, B., & Chakraborty, S. (2009). Biological and molecular characterization of a begomovirus associated with yellow mosaic vein mosaic disease of pumpkin from Northern India. Virus Genes, 39, 359-370.
43. Singh, M. K., Singh, K., Haq, Q. M. R., Mandal, B., & Varma, A. (2011). Molecular characterization of Tobacco leaf curl Pusa virus, a new monopartite Begomovirus associated with tobacco leaf curl disease in India. Virus Genes, 43, 296-306.
44. Sivalingam, P. N., Malathi, V. G., & Varma, A. (2010). Molecular diversity of the DNA-β satellites associated with tomato leaf curl disease in India. Archives of Virology, 155, 757-764.
45. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology of Evolution, 10, 1093.
46. Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
47. Venkataravanappa, V., Reddy, C. N. L., Jalali, S., & Krishna Reddy, M. (2012). Molecular characterization of distinct bipartite begomovirus infecting bhendi (Abelmoschus esculentus L.) in India. Virus Genes, 44, 522-535.
48. Venkataravanappa, V., Reddy, C. N. L., Swaranalatha, P., Jalali, S., Briddon, R. W., & Krishna Reddy, M. (2011). Diversity and phylogeography of begomovirus-associated beta satellites of okra in India. Virology Journal, 8, 555.
49. Zhou, X. P., Liu, Y., Calvert, L., Munoz, C., Otime-Nape, G. W., Robinson, D. J., et al. (2003). Evidence that DNA-A of geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination. Journal of General Virology, 78, 2101-2111.