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Volumn 15, Issue 1, 2014, Pages

Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bulls

Author keywords

Cattle; CNVs; HSFY; Male fertility; Sire conception rate; Testis size; ZNF280BY

Indexed keywords

HIRUDIN-SENSITIVE FIBROBLAST PROTEINASE; PROTEINASE; REPRESSOR PROTEIN;

EID: 84893667597     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-113     Document Type: Article
Times cited : (40)

References (42)
  • 2
    • 84880678617 scopus 로고    scopus 로고
    • The male-specific region of the bovine Y chromosome is gene-rich with a high transcriptomic activity in testis development
    • 10.1073/pnas.1221104110, 3725088, 23842086
    • Chang T, Yang Y, Retzel EF, Liu W-S. The male-specific region of the bovine Y chromosome is gene-rich with a high transcriptomic activity in testis development. Proc Natl Acad Sci U S A 2013, 110:12373-12378. 10.1073/pnas.1221104110, 3725088, 23842086.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 12373-12378
    • Chang, T.1    Yang, Y.2    Retzel, E.F.3    Liu, W.-S.4
  • 3
    • 78650940971 scopus 로고    scopus 로고
    • ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae
    • 10.1186/1471-2164-12-13, 3032696, 21214936
    • Yang Y, Chang T-C, Yasue H, Bharti AK, Retzel EF, Liu W-S. ZNF280BY and ZNF280AY: autosome derived Y-chromosome gene families in Bovidae. BMC Genomics 2011, 12:13. 10.1186/1471-2164-12-13, 3032696, 21214936.
    • (2011) BMC Genomics , vol.12 , pp. 13
    • Yang, Y.1    Chang, T.-C.2    Yasue, H.3    Bharti, A.K.4    Retzel, E.F.5    Liu, W.-S.6
  • 4
    • 79951818669 scopus 로고    scopus 로고
    • The expansion of the PRAME gene family in Eutheria
    • 10.1371/journal.pone.0016867, 3037382, 21347312
    • Chang T-C, Yang Y, Yasue H, Bharti AK, Retzel EF, Liu W-S. The expansion of the PRAME gene family in Eutheria. PLoS One 2011, 6:e16867. 10.1371/journal.pone.0016867, 3037382, 21347312.
    • (2011) PLoS One , vol.6
    • Chang, T.-C.1    Yang, Y.2    Yasue, H.3    Bharti, A.K.4    Retzel, E.F.5    Liu, W.-S.6
  • 5
    • 72949093153 scopus 로고    scopus 로고
    • The multicopy gene Sly represses the Sex chromosomes in the male mouse germline after meiosis
    • 10.1371/journal.pbio.1000244, 2770110, 19918361
    • Cocquet J, Ellis PJI, Yamauchi Y, Mahadevaiah SK, Affara NA, Ward MA, Burgoyne PS. The multicopy gene Sly represses the Sex chromosomes in the male mouse germline after meiosis. PLoS Biol 2009, 7:e1000244. 10.1371/journal.pbio.1000244, 2770110, 19918361.
    • (2009) PLoS Biol , vol.7
    • Cocquet, J.1    Ellis, P.J.I.2    Yamauchi, Y.3    Mahadevaiah, S.K.4    Affara, N.A.5    Ward, M.A.6    Burgoyne, P.S.7
  • 6
    • 0030725069 scopus 로고    scopus 로고
    • Functional coherence of the human Y chromosome
    • 10.1126/science.278.5338.675, 9381176
    • Lahn BT, Page DC. Functional coherence of the human Y chromosome. Science 1997, 278:675-680. 10.1126/science.278.5338.675, 9381176.
    • (1997) Science , vol.278 , pp. 675-680
    • Lahn, B.T.1    Page, D.C.2
  • 7
    • 0035293885 scopus 로고    scopus 로고
    • The human Y chromosome, in the light of evolution
    • 10.1038/35056058, 11256072
    • Lahn BT, Pearson NM, Jegalian K. The human Y chromosome, in the light of evolution. Nat Rev Genet 2001, 2:207-216. 10.1038/35056058, 11256072.
    • (2001) Nat Rev Genet , vol.2 , pp. 207-216
    • Lahn, B.T.1    Pearson, N.M.2    Jegalian, K.3
  • 8
    • 68049148662 scopus 로고    scopus 로고
    • The multi-copy mouse gene Sycp3-like Y-linked (Sly) encodes an abundant spermatid protein that interacts with a histone acetyltransferase and an acrosomal protein
    • 10.1095/biolreprod.108.075382, 2849823, 19176879
    • Reynard LN, Cocquet J, Burgoyne PS. The multi-copy mouse gene Sycp3-like Y-linked (Sly) encodes an abundant spermatid protein that interacts with a histone acetyltransferase and an acrosomal protein. Biol Reprod 2009, 81:250-257. 10.1095/biolreprod.108.075382, 2849823, 19176879.
    • (2009) Biol Reprod , vol.81 , pp. 250-257
    • Reynard, L.N.1    Cocquet, J.2    Burgoyne, P.S.3
  • 10
  • 11
    • 84865465926 scopus 로고    scopus 로고
    • Testis-specific protein Y-encoded copy number is correlated to its expression and the field fertility of Canadian Holstein bulls
    • 10.1159/000338938, 22688524
    • Hamilton CK, Verduzco-Gómez AR, Favetta LA, Blondin P, King WA. Testis-specific protein Y-encoded copy number is correlated to its expression and the field fertility of Canadian Holstein bulls. Sex Dev 2012, 6:231-239. 10.1159/000338938, 22688524.
    • (2012) Sex Dev , vol.6 , pp. 231-239
    • Hamilton, C.K.1    Verduzco-Gómez, A.R.2    Favetta, L.A.3    Blondin, P.4    King, W.A.5
  • 12
    • 84888055425 scopus 로고    scopus 로고
    • PRAMEY copy number variation across breeds and its association with male fertility in Holstein sires
    • 10.3168/jds.2013-7037, 24119816
    • Yue X-P, Chang T-C, DeJarnette JM, Marshall CE, Lei C-Z, Liu W-S. PRAMEY copy number variation across breeds and its association with male fertility in Holstein sires. J Dairy Sci 2013, 96(12):8024-8034. 10.3168/jds.2013-7037, 24119816.
    • (2013) J Dairy Sci , vol.96 , Issue.12 , pp. 8024-8034
    • Yue, X.-P.1    Chang, T.-C.2    DeJarnette, J.M.3    Marshall, C.E.4    Lei, C.-Z.5    Liu, W.-S.6
  • 13
    • 34147143610 scopus 로고    scopus 로고
    • The origin and evolution of human ampliconic gene families and ampliconic structure
    • 10.1101/gr.5734907, 1832091, 17185645
    • Bhowmick BK, Satta Y, Takahata N. The origin and evolution of human ampliconic gene families and ampliconic structure. Genome Res 2007, 17:441-450. 10.1101/gr.5734907, 1832091, 17185645.
    • (2007) Genome Res , vol.17 , pp. 441-450
    • Bhowmick, B.K.1    Satta, Y.2    Takahata, N.3
  • 15
    • 3843121046 scopus 로고    scopus 로고
    • Organization and concerted evolution of the ampliconic Y-chromosomal TSPY genes from cattle
    • 10.1016/j.ygeno.2004.05.001, 15498454
    • Verkaar ELC, Zijlstra C, van 't Veld EM, Boutaga K, van Boxtel DCJ, Lenstra JA. Organization and concerted evolution of the ampliconic Y-chromosomal TSPY genes from cattle. Genomics 2004, 84:468-474. 10.1016/j.ygeno.2004.05.001, 15498454.
    • (2004) Genomics , vol.84 , pp. 468-474
    • Verkaar, E.L.C.1    Zijlstra, C.2    van 't Veld, E.M.3    Boutaga, K.4    van Boxtel, D.C.J.5    Lenstra, J.A.6
  • 17
    • 79952344735 scopus 로고    scopus 로고
    • A large expansion of the HSFY gene family in cattle shows dispersion across Yq and testis-specific expression
    • 10.1371/journal.pone.0017790, 3049798, 21408193
    • Hamilton CK, Revay T, Domander R, Favetta LA, King WA. A large expansion of the HSFY gene family in cattle shows dispersion across Yq and testis-specific expression. PLoS One 2011, 6:e17790. 10.1371/journal.pone.0017790, 3049798, 21408193.
    • (2011) PLoS One , vol.6
    • Hamilton, C.K.1    Revay, T.2    Domander, R.3    Favetta, L.A.4    King, W.A.5
  • 18
    • 33748119855 scopus 로고    scopus 로고
    • Altered expression pattern of heat shock transcription factor, Y chromosome (HSFY) may be related to altered differentiation of spermatogenic cells in testes with deteriorated spermatogenesis
    • 10.1016/j.fertnstert.2006.01.053, 16952509
    • Sato Y, Yoshida K, Shinka T, Nozawa S, Nakahori Y, Iwamoto T. Altered expression pattern of heat shock transcription factor, Y chromosome (HSFY) may be related to altered differentiation of spermatogenic cells in testes with deteriorated spermatogenesis. Fertil Steril 2006, 86:612-618. 10.1016/j.fertnstert.2006.01.053, 16952509.
    • (2006) Fertil Steril , vol.86 , pp. 612-618
    • Sato, Y.1    Yoshida, K.2    Shinka, T.3    Nozawa, S.4    Nakahori, Y.5    Iwamoto, T.6
  • 19
    • 3142664681 scopus 로고    scopus 로고
    • Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility
    • 10.1095/biolreprod.103.023580, 15044259
    • Shinka T, Sato Y, Chen G, Naroda T, Kinoshita K, Unemi Y, Tsuji K, Toida K, Iwamoto T, Nakahori Y. Molecular characterization of heat shock-like factor encoded on the human Y chromosome, and implications for male infertility. Biol Reprod 2004, 71:297-306. 10.1095/biolreprod.103.023580, 15044259.
    • (2004) Biol Reprod , vol.71 , pp. 297-306
    • Shinka, T.1    Sato, Y.2    Chen, G.3    Naroda, T.4    Kinoshita, K.5    Unemi, Y.6    Tsuji, K.7    Toida, K.8    Iwamoto, T.9    Nakahori, Y.10
  • 20
    • 18644369633 scopus 로고    scopus 로고
    • A deletion of a novel heat shock gene on the Y chromosome associated with azoospermia
    • 10.1093/molehr/gah153, 15734897
    • Vinci G, Raicu F, Popa L, Popa O, Cocos R, McElreavey K. A deletion of a novel heat shock gene on the Y chromosome associated with azoospermia. Mol Hum Reprod 2005, 11:295-298. 10.1093/molehr/gah153, 15734897.
    • (2005) Mol Hum Reprod , vol.11 , pp. 295-298
    • Vinci, G.1    Raicu, F.2    Popa, L.3    Popa, O.4    Cocos, R.5    McElreavey, K.6
  • 21
    • 53649099479 scopus 로고    scopus 로고
    • Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome
    • 10.1016/j.ygeno.2008.06.012, 18674610
    • Pearks Wilkerson AJ, Raudsepp T, Graves T, Albracht D, Warren W, Chowdhary BP, Skow LC, Murphy WJ. Gene discovery and comparative analysis of X-degenerate genes from the domestic cat Y chromosome. Genomics 2008, 92:329-338. 10.1016/j.ygeno.2008.06.012, 18674610.
    • (2008) Genomics , vol.92 , pp. 329-338
    • Pearks Wilkerson, A.J.1    Raudsepp, T.2    Graves, T.3    Albracht, D.4    Warren, W.5    Chowdhary, B.P.6    Skow, L.C.7    Murphy, W.J.8
  • 22
    • 0035253047 scopus 로고    scopus 로고
    • Zinc finger proteins: new insights into structural and functional diversity
    • 10.1016/S0959-440X(00)00167-6, 11179890
    • Laity JH, Lee BM, Wright PE. Zinc finger proteins: new insights into structural and functional diversity. Curr Opin Struct Biol 2001, 11:39-46. 10.1016/S0959-440X(00)00167-6, 11179890.
    • (2001) Curr Opin Struct Biol , vol.11 , pp. 39-46
    • Laity, J.H.1    Lee, B.M.2    Wright, P.E.3
  • 23
    • 0020572981 scopus 로고
    • Drosophila melanogaster mutations suppressible by the suppressor of Hairy-wing are insertions of a 7.3-kilobase mobile element
    • 10.1073/pnas.80.6.1678, 393666, 6300868
    • Modolell J, Bender W, Meselson M. Drosophila melanogaster mutations suppressible by the suppressor of Hairy-wing are insertions of a 7.3-kilobase mobile element. Proc Natl Acad Sci U S A 1983, 80:1678-1682. 10.1073/pnas.80.6.1678, 393666, 6300868.
    • (1983) Proc Natl Acad Sci U S A , vol.80 , pp. 1678-1682
    • Modolell, J.1    Bender, W.2    Meselson, M.3
  • 24
    • 39749093935 scopus 로고    scopus 로고
    • Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
    • 10.1186/gb-2007-8-8-r167, 2374998, 17705839
    • Adryan B, Woerfel G, Birch-Machin I, Gao S, Quick M, Meadows L, Russell S, White R. Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila. Genome Biol 2007, 8:R167. 10.1186/gb-2007-8-8-r167, 2374998, 17705839.
    • (2007) Genome Biol , vol.8
    • Adryan, B.1    Woerfel, G.2    Birch-Machin, I.3    Gao, S.4    Quick, M.5    Meadows, L.6    Russell, S.7    White, R.8
  • 26
    • 46649115430 scopus 로고    scopus 로고
    • Splign: algorithms for computing spliced alignments with identification of paralogs
    • 10.1186/1745-6150-3-20, 2440734, 18495041
    • Kapustin Y, Souvorov A, Tatusova T, Lipman D. Splign: algorithms for computing spliced alignments with identification of paralogs. Biol Direct 2008, 3:20. 10.1186/1745-6150-3-20, 2440734, 18495041.
    • (2008) Biol Direct , vol.3 , pp. 20
    • Kapustin, Y.1    Souvorov, A.2    Tatusova, T.3    Lipman, D.4
  • 27
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • 10.1093/molbev/msr121, 3203626, 21546353
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 28
    • 0000898845 scopus 로고
    • An analysis of variance test for normality (complete samples)
    • Shapiro SS, Wilk MB. An analysis of variance test for normality (complete samples). Biometrika 1965, 52:591-611.
    • (1965) Biometrika , vol.52 , pp. 591-611
    • Shapiro, S.S.1    Wilk, M.B.2
  • 29
    • 0031572682 scopus 로고    scopus 로고
    • A multivariate Kolmogorov-Smirnov test of goodness of fit
    • Justel A, Peña D, Zamar R. A multivariate Kolmogorov-Smirnov test of goodness of fit. Stat Probab Lett 1997, 35:251-259.
    • (1997) Stat Probab Lett , vol.35 , pp. 251-259
    • Justel, A.1    Peña, D.2    Zamar, R.3
  • 30
    • 0002322469 scopus 로고
    • On a test of whether one of Two random variables is stochastically larger than the other
    • Mann HB, Whitney DR. On a test of whether one of Two random variables is stochastically larger than the other. Ann Math Stat 1947, 18:50-60.
    • (1947) Ann Math Stat , vol.18 , pp. 50-60
    • Mann, H.B.1    Whitney, D.R.2
  • 31
    • 84943987463 scopus 로고
    • Multiple comparisons among means
    • Dunn OJ. Multiple comparisons among means. J Am Stat Assoc 1961, 56:52-64.
    • (1961) J Am Stat Assoc , vol.56 , pp. 52-64
    • Dunn, O.J.1
  • 35
    • 34547616501 scopus 로고    scopus 로고
    • The new mutation theory of phenotypic evolution
    • 10.1073/pnas.0703349104, 1941456, 17640887
    • Nei M. The new mutation theory of phenotypic evolution. Proc Natl Acad Sci U S A 2007, 104:12235-12242. 10.1073/pnas.0703349104, 1941456, 17640887.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 12235-12242
    • Nei, M.1
  • 36
    • 0030880506 scopus 로고    scopus 로고
    • Comparative analysis of Y chromosome structure in Bos taurus and B. indicus by FISH using region-specific, microdissected, and locus-specific DNA probes
    • 10.1159/000134584, 9284924
    • Goldammer T, Brunner RM, Schwerin M. Comparative analysis of Y chromosome structure in Bos taurus and B. indicus by FISH using region-specific, microdissected, and locus-specific DNA probes. Cytogenet Cell Genet 1997, 77:238-241. 10.1159/000134584, 9284924.
    • (1997) Cytogenet Cell Genet , vol.77 , pp. 238-241
    • Goldammer, T.1    Brunner, R.M.2    Schwerin, M.3
  • 38
    • 0345765478 scopus 로고    scopus 로고
    • Testicular thermoregulation in Bos indicus, crossbred and Bos taurus bulls: relationship with scrotal, testicular vascular cone and testicular morphology, and effects on semen quality and sperm production
    • 10.1016/S0093-691X(03)00231-0, 14662148
    • Brito LFC, Silva AEDF, Barbosa RT, Kastelic JP. Testicular thermoregulation in Bos indicus, crossbred and Bos taurus bulls: relationship with scrotal, testicular vascular cone and testicular morphology, and effects on semen quality and sperm production. Theriogenology 2004, 61:511-528. 10.1016/S0093-691X(03)00231-0, 14662148.
    • (2004) Theriogenology , vol.61 , pp. 511-528
    • Brito, L.F.C.1    Silva, A.E.D.F.2    Barbosa, R.T.3    Kastelic, J.P.4
  • 39
    • 84857444302 scopus 로고    scopus 로고
    • Impact of genomic selection of AI dairy sires on their likely utilization and methods to estimate fertility: a paradigm shift
    • 10.1016/j.theriogenology.2011.09.002, 22153268
    • Amann RP, DeJarnette JM. Impact of genomic selection of AI dairy sires on their likely utilization and methods to estimate fertility: a paradigm shift. Theriogenology 2012, 77:795-817. 10.1016/j.theriogenology.2011.09.002, 22153268.
    • (2012) Theriogenology , vol.77 , pp. 795-817
    • Amann, R.P.1    DeJarnette, J.M.2
  • 40
    • 77949745690 scopus 로고    scopus 로고
    • Dosage sensitivity shapes the evolution of copy-number varied regions
    • 10.1371/journal.pone.0009474, 2835737, 20224824
    • Schuster-Böckler B, Conrad D, Bateman A. Dosage sensitivity shapes the evolution of copy-number varied regions. PLoS One 2010, 5:e9474. 10.1371/journal.pone.0009474, 2835737, 20224824.
    • (2010) PLoS One , vol.5
    • Schuster-Böckler, B.1    Conrad, D.2    Bateman, A.3
  • 42
    • 6444240883 scopus 로고    scopus 로고
    • Evaluation of fertility and infertility in natural service bulls
    • Parkinson TJ. Evaluation of fertility and infertility in natural service bulls. Vet J Lond Engl 1997, 168(2004):215-229.
    • (1997) Vet J Lond Engl , vol.168 , Issue.2004 , pp. 215-229
    • Parkinson, T.J.1


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