Autopilot: An online data acquisition control system for the enhanced high-throughput characterization of intact proteins

Analytical Chemistry

Volumn 86, Issue 3, 2014, Pages 1485-1492

  Durbin, Kenneth R ^a   Fellers, Ryan T ^a   Ntai, Ioanna ^a   Kelleher, Neil L ^a   Compton, Philip D ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FRAGMENTATION EVENTS; HIGH THROUGH-PUT CHARACTERIZATION; ON-LINE DATA ACQUISITION; ORDERS OF MAGNITUDE; PROTEIN IDENTIFICATION; PSEUDOMONAS AERUGINOSA; SEPARATION TECHNIQUES; TOP DOWN PROTEOMICS;

BIOINFORMATICS; CHARACTERIZATION; DATA ACQUISITION; MASS SPECTROMETRY; MOLECULAR BIOLOGY; SEARCH ENGINES;

PROTEINS;

BACTERIAL PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; HIGH THROUGHPUT SCREENING; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; ONLINE SYSTEM; PROTEOMICS; PSEUDOMONAS AERUGINOSA; STATISTICS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; HIGH-THROUGHPUT SCREENING ASSAYS; MOLECULAR SEQUENCE DATA; ONLINE SYSTEMS; PROTEOMICS; PSEUDOMONAS AERUGINOSA; STATISTICS AS TOPIC;

EID: 84893603010     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac402904h     Document Type: Article

References (19)

1. Tran, J. C.; Doucette, A. A. Anal. Chem. 2009, 81, 6201-6209
2. Lee, J. E.; Kellie, J. F.; Tran, J. C.; Tipton, J. D.; Catherman, A. D.; Thomas, H. M.; Ahlf, D. R.; Durbin, K. R.; Vellaichamy, A.; Ntai, I.; Marshall, A. G.; Kelleher, N. L. J. Am. Soc. Mass Spectrom. 2009, 20, 2183-2191
3. Ahlf, D. R.; Compton, P. D.; Tran, J. C.; Early, B. P.; Thomas, P. M.; Kelleher, N. L. J. Proteome Res. 2012, 11, 4308-4314
4. Tran, J. C.; Zamdborg, L.; Ahlf, D. R.; Lee, J. E.; Catherman, A. D.; Durbin, K. R.; Tipton, J. D.; Vellaichamy, A.; Kellie, J. F.; Li, M.; Wu, C.; Sweet, S. M. M.; Early, B. P.; Siuti, N.; LeDuc, R. D.; Compton, P. D.; Thomas, P. M.; Kelleher, N. L. Nature 2011, 480, 254-U141
5. Catherman, A. D.; Durbin, K. R.; Ahlf, D. R.; Early, B. P.; Fellers, R. T.; Tran, J. C.; Thomas, P. M.; Kelleher, N. L. Mol. Cell. Proteomics 2013, 12, 3465-3473
6. Zamdborg, L.; LeDuc, R. D.; Glowacz, K. J.; Kim, Y. B.; Viswanathan, V.; Spaulding, I. T.; Early, B. P.; Bluhm, E. J.; Babai, S.; Kelleher, N. L. Nucleic Acids Res. 2007, 35, W701-W706
7. Bailey, D. J.; Rose, C. M.; McAlister, G. C.; Brumbaugh, J.; Yu, P. Z.; Wenger, C. D.; Westphall, M. S.; Thomson, J. A.; Coon, J. J. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 8411-8416
8. Graumann, J.; Scheltema, R. A.; Zhang, Y.; Cox, J.; Mann, M. Mol. Cell. Proteomics 2012, 11 M111.013185
9. Wenger, C. D.; Boyne, M. T., II; Ferguson, J. T.; Robinson, D. E.; Kelleher, N. L. Anal. Chem. 2008, 80, 8055-8063
10. Zubarev, R. A. Proteomics 2013, 13, 723-726
11. Wessel, D.; Flugge, U. I. Anal. Biochem. 1984, 138, 141-143
12. Catherman, A. D.; Li, M. X.; Tran, J. C.; Durbin, K. R.; Compton, P. D.; Early, B. P.; Thomas, P. M.; Kelleher, N. L. Anal. Chem. 2013, 85, 1880-1888
13. Zabrouskov, V.; Senko, M. W.; Du, Y.; Leduc, R. D.; Kelleher, N. L. J. Am. Soc. Mass Spectrom. 2005, 16, 2027-2038
14. Durbin, K. R.; Tran, J. C.; Zamdborg, L.; Sweet, S. M. M.; Catherman, A. D.; Lee, J. E.; Li, M. X.; Kellie, J. F.; Kelleher, N. L. Proteomics 2010, 10, 3589-3597
15. Fabris, D.; Kelly, M.; Murphy, C.; Wu, Z. C.; Fenselau, C. J. Am. Soc. Mass Spectrom. 1993, 4, 652-661
16. Skinner, O. S.; Catherman, A. D.; Early, B. P.; Thomas, P. M.; Compton, P. D.; Kelleher, N. L. Unpublished work, 2013.
17. McLuckey, S. A.; Stephenson, J. L.; Asano, K. G. Anal. Chem. 1998, 70, 1198-1202
18. Patrie, S. M.; Ferguson, J. T.; Robinson, D. E.; Whipple, D.; Rother, M.; Metcalf, W. W.; Kelleher, N. L. Mol. Cell. Proteomics 2006, 5, 14-25
19. Meng, F. Y.; Cargile, B. J.; Miller, L. M.; Forbes, A. J.; Johnson, J. R.; Kelleher, N. L. Nat. Biotechnol. 2001, 19, 952-957