Honing in on phenotypes: Comprehensive two-dimensional gas chromatography of herbivory-induced volatile emissions and novel opportunities for system-level analyses

AoB PLANTS

Volumn 5, Issue , 2013, Pages

  Gaquerel, Emmanuel ^a   Baldwin, Ian T ^a  

^a MAX PLANCK INSTITUTE FOR CHEMICAL ECOLOGY   (Germany)

Author keywords

Herbivory; Metabolomics; Nicotiana attenuate; Plant volatiles; Two dimensional gas chromatography; Untargeted analysis

Indexed keywords

EID: 84893563981     PISSN: None     EISSN: 20412851     Source Type: Journal    
DOI: 10.1093/aobpla/plt002     Document Type: Article

References (45)

1. Aharoni A, Keizer LCP, Bouwmeester HJ, Sun Z, Alvarez-Huerta M, Verhoeven HA, Blaas J. 2000. Identification of the SAAT gene involved in strawberry flavor biogenesis by use of DNA microarrays. The Plant Cell 12: 647-662.
2. Allmann S, Baldwin IT. 2010. Insects betray themselves in nature to predators by rapid isomerization of green leaf volatiles. Science 329: 1075-1078.
3. Baldwin IT. 2010. Plant volatiles. Current Biology 20: 392-397.
4. Bonaventure G, VanDoorn A, Baldwin IT. 2011. Herbivoreassociated elicitors: FAC signaling and metabolism. Trends in Plant Science 16: 294-299.
5. Davies AN. 1998. The new Automated Mass Spectrometry Deconvolution and Identification System (AMDIS). Spectroscopy Europe 3: 165-172.
6. De Bok FAM, Janssen PWM, Bayjanov JR, Sieuwerts S, Lommen A, Van Hylckama Vlieg JET, Molenaar D. 2011. Volatile compound fingerprinting of mixed-culture fermentations. Applied and Environmental Microbiology 77: 6233-6239.
7. De Moraes CM, Lewis WJ, Pare PW, Alborn HT, Tumlinson JH. 1998. Herbivore-infested plants selectively attract parasitoids. Nature 393: 570-573. (Pubitemid 28319244)
8. Dicke M. 2000. Chemical ecology of host-plant selection by herbivorous arthropods: a multitrophic perspective. Biochemical Systematics and Ecology 28: 601-617. (Pubitemid 30422283)
9. Fiehn O. 2002. Metabolomics-the link between genotypes and phenotypes. Plant Molecular Biology 48: 155-171.
10. Gaquerel E, Weinhold A, Baldwin IT. 2009. Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphigidae) and its natural host Nicotiana attenuata VIII An unbiased GCGC-ToFMS analysis of the plant's elicited volatile emissions. Plant Physiology 149: 1408-1423.
11. Gilardoni PA, Schuck S, Jungling R, Rotter B, Baldwin IT, Bonaventure G. 2010. SuperSAGE analysis of the Nicotiana attenuata transcriptome after fatty acid-amino acid elicitation (FAC): identification of early mediators of insect responses. BMC Plant Biology 10: 66.
12. Halitschke R, Schittko U, Pohnert G, Boland W, Baldwin IT. 2001. Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. III. Fatty acid-amino acid conjugates in herbivore oral secretions are necessary and sufficient for herbivore-specific plant responses. Plant Physiology 125: 711-717. (Pubitemid 32169878)
13. Halitschke R, Ziegler J, Keinanen M, Baldwin IT. 2004. Silencing of hydroperoxide lyase and allene oxide synthase reveals substrate and defense signaling crosstalk in Nicotiana attenuata. The Plant Journal 40: 35-46. (Pubitemid 39342592)
14. Hare DJ. 2007. Variation in herbivore and methyl jasmonateinduced volatiles among genetic lines of Datura wrightii. Journal of Chemical Ecology 33: 2028-2043.
15. Hirai MY, Klein M, Fujikawa Y, Yano M, Goodenowe DB, Yamazaki Y, Kanaya Y, Saito K. 2005. Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics. The Journal of Biological Chemistry 280: 25590-25595. (Pubitemid 40962266)
16. Kallenbach M, Alagna F, Baldwin IT, Bonaventure G. 2010. Nicotiana attenuata SIPK, WIPK, NPR1, and fatty acid-amino acid conjugates participate in the induction of jasmonic acid biosynthesis by affecting early enzymatic steps in the pathway. Plant Physiology 152: 96-106.
17. Kallenbach M, Gilardoni PA, Allmann S, Baldwin IT, Bonaventure G. 2011. C12 derivatives of the hydroperoxide lyase pathway are produced by product recycling through lipoxygenase-2 in Nicotiana attenuata leaves. New Phytologist 191: 1054-1068.
18. Katajamaa M, Oresic M. 2007. Data processing for mass spectrometry-based metabolomics. Journal of Chromatography A 1158: 318-328. (Pubitemid 47021150)
19. Katajamaa M, Miettinen J, Oresic M. 2006. MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics 22: 634-636. (Pubitemid 43372832)
20. Kessler A, Baldwin IT. 2001. Defensive function of herbivore-induced plant volatile emissions in nature. Science 291: 2141-2144. (Pubitemid 32224443)
21. Kessler A, Halitschke R, Baldwin IT. 2004. Silencing the jasmonate cascade: induced plant defenses and insect populations. Science 305: 665-668. (Pubitemid 39006754)
22. Korner E, von Dahl CC, Bonaventure G, Baldwin IT. 2009. Pectin methylesterase NaPME1 contributes to the emission of methanol during insect herbivory and to the elicitation of defence responses in Nicotiana attenuata. Journal of Experimental Botany 60: 2631-2640.
23. Kuhl C, Tautenhahn R, Bottcher C, Larson TR, Neumann S. 2013. CAMERA: an integrated strategy for compound spectra extraction and annotation of LC/MS data sets. Analytical Chemistry 84: 283-289.
24. Lommen A. 2009. MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Analytical Chemistry 81: 3079-3086.
25. Lommen A, Van Der Weg G, Van Engelen MC, Bor G, Hoogenboom LAP, Nielen MWG. 2007. An untargeted metabolomics approach to contaminant analysis: pinpointing potential unknown compounds. Analytica Chimica Acta 584: 43-49. (Pubitemid 46137954)
26. Matsui K. 2006. Green leaf volatiles: hydroperoxide lyase pathway of oxylipin metabolism. Current Opinion in Plant Biology 9: 274-280.
27. Mattiacci L, Dicke M, Posthumus MA. 1995. beta-Glucosidase: an elicitor of herbivore-induced plant odor that attracts host-searching parasitic wasps. Proceedings of the National Academy of Sciences of the USA 92: 2036-2040.
28. Mercke P, Kappers IF, Verstappen FWA, Vorst O, Dicke M, Bouwmeester HJ. 2004. Combined transcript andmetabolite analysis reveals genes involved in spider mite induced volatile formation in cucumber plants. Plant Physiology 135: 2012-2024. (Pubitemid 39182781)
29. Saito K, Hirai MY, Yonekura-Sakakibara K. 2008. Decoding genes with coexpression networks and metabolomics-'majority report by precogs'. Trends in Plant Science 13: 36-43.
30. Schuman MC, Heinzel N, Gaquerel E, Svatos A, Baldwin IT. 2009. Polymorphism in jasmonate signaling partially accounts for the variety of volatiles produced by Nicotiana attenuata plants in a native population. New Phytologist 183: 1134-1148.
31. Schwachtje J, Minchin PEH, Jahnke S, Dongen V, Schittko U, Baldwin IT. 2006. SNF1-related kinases allow plants to tolerate herbivory by allocating carbon to roots. Proceedings of the National Academy of Sciences of the USA 103: 12935-12940. (Pubitemid 44298664)
32. Skogerson K, Wohlgemuth G, Barupal DK, Fiehn O. 2011. The volatile compound BinBase mass spectral database. BMC Bioinformatics 4: 321.
33. Smith CA, Want EJ, O'Maille G, Abagyan G, Siuzdak G. 2006. XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Analytical Chemistry 78: 779-87. (Pubitemid 43228585)
34. Tautenhahn R, Bottcher C, Neumann S. 2008. Highly sensitive feature detection for high resolution LC/MS. BMC Bioinformatics 9: 504.
35. Tholl D, Boland W, Hansel A, Loreto F, Rose USR, Schnitzler JP. 2006. Practical approaches to plant volatile analysis. The Plant Journal 45: 540-560. (Pubitemid 43373708)
36. Tikunov Y, Lommen A, De Vos CHR, Verhoeven HA, Bino RJ, Hall RD, Bovy AG. 2005. A novel approach for nontargeted data analysis for metabolomics. Large-scale profiling of tomato fruit volatiles. Plant Physiology 139: 1125-1137.
37. Tikunov YM, De Vos RCH, Gonza lez Paramas AXM, Hall RD, Bovy AG. 2010. A role for differential glycoconjugation in the emission of phenylpropanoid volatiles from tomato fruit discovered using a metabolic data fusion approach. Plant Physiology 152: 55-70.
38. Turlings TCJ. 1998. The induction of volatile emissions in maize by three herbivore species with different feeding habits: possible consequences for their natural enemies. Biological Control 11: 122-129. (Pubitemid 28153891)
39. Van Dam NM, Poppy GM. 2008. Why plant volatile analysis needs bioinformatics-detecting signal from noise in increasingly complex profiles. Plant Biology 10: 29-37. (Pubitemid 351495510)
40. Van Doorn A, KallenbachM, Borquez AA, Baldwin IT, Bonaventure G. 2010. Rapid modification of the insect elicitor N-linolenoylglutamate via a lipoxygenase-mediated mechanism on Nicotiana attenuata leaves. BMC Plant Biology 10: 164.
41. Van Poecke RMP, Dicke M. 2004. Indirect defence of plants against herbivores: using Arabidopsis thaliana as a model plant. Plant Biology 6: 387-401. (Pubitemid 38946998)
42. Von Dahl CC, Havecker M, Schlogl R, Baldwin IT. 2006. Caterpillarelicited methanol emission: a new signal in plant-herbivore interactions? The Plant Journal 46: 948-960.
43. Von Dahl CC, Winz R, Halitschke R, Kuhnemann F, Gase K, Baldwin IT. 2007. Tuning the herbivore-induced ethylene burst: the role of transcript accumulation and ethylene perception in Nicotiana attenuata. The Plant Journal 51: 293-307. (Pubitemid 47030127)
44. Wu J, Hettenhausen C, Meldau S, Baldwin IT. 2007. Herbivory rapidly activates MAPK signaling in attacked and unattacked leaf regions but not between leaves of Nicotiana attenuata. The Plant Cell 19: 1096-1122. (Pubitemid 46953249)
45. Xia J, Wishart DS. 2011. Web-based inference of biological patterns, functions and pathways from metabolomic data using MetaboAnalyst. Nature Protocols 6: 743-760.