Actin reorganization through dynamic interactions with single-wall carbon nanotubes

ACS Nano

Volumn 8, Issue 1, 2014, Pages 188-197

  Shams, Hengameh ^a,b   Holt, Brian D ^c   Mahboobi, Seyed Hanif ^a   Jahed, Zeinab ^a   Islam, Mohammad F ^c   Dahl, Kris Noel ^c   Mofrad, Mohammad R K ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c CARNEGIE MELLON UNIVERSITY   (United States)

Author keywords

actin; cytoskeleton; molecular dynamics; near infrared fluorescence spectroscopy; single walled carbon nanotubes

Indexed keywords

ACTIN; ACTIN REORGANIZATION; BIOLOGICAL APPLICATIONS; CONFORMATIONAL CHANGE; CYTOSKELETONS; HYDROPHOBIC INTERACTIONS; MOLECULAR DYNAMICS SIMULATIONS; NEAR-INFRARED FLUORESCENCE;

FLUORESCENCE SPECTROSCOPY; INFRARED DEVICES; MOLECULAR DYNAMICS; NEAR INFRARED SPECTROSCOPY; SINGLE-WALLED CARBON NANOTUBES (SWCN);

PROTEINS;

ACTIN; CARBON NANOTUBE;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; MOLECULAR DYNAMICS;

ACTINS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; NANOTUBES, CARBON;

EID: 84893496560     PISSN: 19360851     EISSN: 1936086X     Source Type: Journal    
DOI: 10.1021/nn402865e     Document Type: Article

References (43)

1. Yang, W.; Thordarson, P.; Gooding, J. J.; Ringer, S. P.; Braet, F. Carbon Nanotubes for Biological and Biomedical Applications Nanotechnology 2007, 18, 412001
2. Bianco, A.; Kostarelos, K.; Partidos, C. D.; Prato, M. Biomedical Applications of Functionalised Carbon Nanotubes Chem. Commun. (Cambridge, U.K.) 2005, 571-577
3. Singh, R.; Pantarotto, D.; McCarthy, D.; Chaloin, O.; Hoebeke, J.; Partidos, C. D.; Briand, J.-P.; Prato, M.; Bianco, A.; Kostarelos, K. Binding and Condensation of Plasmid DNA onto Functionalized Carbon Nanotubes: Toward the Construction of Nanotube-Based Gene Delivery Vectors J. Am. Chem. Soc. 2005, 127, 4388-4396
4. Harrison, B. S.; Atala, A. Carbon Nanotube Applications for Tissue Engineering Biomaterials 2007, 28, 344-353
5. Pantarotto, D.; Singh, R.; McCarthy, D.; Erhardt, M.; Briand, J.-P.; Prato, M.; Kostarelos, K.; Bianco, A. Functionalized Carbon Nanotubes for Plasmid DNA Gene Delivery Angew. Chem., Int. Ed. 2004, 43, 5242-5246
6. Kostarelos, K.; Lacerda, L.; Pastorin, G.; Wu, W.; Wieckowski, S.; Luangsivilay, J.; Godefroy, S.; Pantarotto, D.; Briand, J.-P.; Muller, S. et al. Cellular Uptake of Functionalized Carbon Nanotubes Is Independent of Functional Group and Cell Type Nat. Nanotechnol. 2007, 2, 108-113
7. Pantarotto, D.; Briand, J.-P.; Prato, M.; Bianco, A. Translocation of Bioactive Peptides across Cell Membranes by Carbon Nanotubes Chem. Commun. (Cambridge, U.K.) 2004, 16-17
8. Shi Kam, N. W.; Jessop, T. C.; Wender, P. A.; Dai, H. Nanotube Molecular Transporters: Internalization of Carbon Nanotube-Protein Conjugates into Mammalian Cells J. Am. Chem. Soc. 2004, 126, 6850-6851
9. Kam, N. W. S.; Liu, Z.; Dai, H. Carbon Nanotubes as Intracellular Transporters for Proteins and DNA: An Investigation of the Uptake Mechanism and Pathway Angew. Chem., Int. Ed. 2006, 45, 577-581
10. Heller, D. A.; Baik, S.; Eurell, T. E.; Strano, M. S. Single-Walled Carbon Nanotube Spectroscopy in Live Cells: Towards Long-Term Labels and Optical Sensors Adv. Mater. 2005, 17, 2793-2799
11. Smart, S. K.; Cassady, A. I.; Lu, G. Q.; Martin, D. J. The Biocompatibility of Carbon Nanotubes Carbon 2006, 44, 1034-1047
12. Jamali, T.; Jamali, Y.; Mehrbod, M.; Mofrad, M.R.K. Nuclear Pore Complex: Biochemistry and Biophysics of Nucleocytoplasmic Transport in Health and Disease Int. Rev. Cell Mol. Biol. 2011, 287, 233-286
13. Kam, N. W. S.; Dai, H. Carbon Nanotubes as Intracellular Protein Transporters: Generality and Biological Functionality J. Am. Chem. Soc. 2005, 127, 6021-6026
14. Cherukuri, P.; Bachilo, S. M.; Litovsky, S. H.; Weisman, R. B. Near-Infrared Fluorescence Microscopy of Single-Walled Carbon Nanotubes in Phagocytic Cells J. Am. Chem. Soc. 2004, 126, 15638-15639
15. Lu, Q.; Moore, J. M.; Huang, G.; Mount, A. S.; Rao, A. M.; Larcom, L. L.; Ke, P. C. RNA Polymer Translocation with Single-Walled Carbon Nanotubes Nano Lett. 2004, 4, 2473-2477
16. Bianco, A.; Hoebeke, J.; Godefroy, S.; Chaloin, O.; Pantarotto, D.; Briand, J.-P.; Muller, S.; Prato, M.; Partidos, C. D. Cationic Carbon Nanotubes Bind to CpG Oligodeoxynucleotides and Enhance Their Immunostimulatory Properties J. Am. Chem. Soc. 2005, 127, 58-59
17. Lacerda, L.; Raffa, S.; Prato, M.; Bianco, A.; Kostarelos, K. Cell-Penetrating CNTs For Delivery of Therapeutics Nano Today 2007, 2, 38-43
18. Dresselhaus, B. M. S.; Dresselhaus, G.; Charlier, J. C. Electronic, Thermal and Mechanical Properties of Carbon Nanotubes Philos. Trans. R. Soc., A 2004, 2065-2098
19. Odom, T. W.; Huang, J. Atomic Structure and Electronic Properties of Single-Walled Carbon Nanotubes Nature 1998, 391, 1997-1999
20. Treacy, M. M. J.; Ebbesen, T. W.; Gibson, J. M. Exceptionally High Young's Modulus Observed for Individual Carbon Nanotubes Nature 1996, 381, 678-680
21. Benedict, L. X.; Louie, S. G.; Cohen, M. L. Heat Capacity of Carbon Nanotubes Solid State Commun. 1996, 100, 177-180
22. Zhang, W.; Zhang, Z.; Zhang, Y. The Application of Carbon Nanotubes in Target Drug Delivery Systems for Cancer Therapies Nanoscale Res. Lett. 2011, 6, 555
23. Mofrad, M. R. K.; Kamm, R. D, Eds. Cytoskeletal Mechanics: Models and Measurements in Cell Mechanics; Cambridge University Press: Cambridge, U.K., 2011.
24. Yaron, P. N.; Holt, B. D.; Short, P. A.; Loie;sche, M.; Islam, M. F.; Dahl, K. N. Single Wall Carbon Nanotubes Enter Cells by Endocytosis and Not Membrane Penetration J. Nanobiotechnol. 2011, 9, 45
25. Holt, B. D.; Short, P. A.; Rape, A. D.; Wang, Y.; Islam, M. F.; Dahl, K. N. Carbon Nanotubes Reorganize Actin Structures in Cells and ex Vivo ACS Nano 2010, 4, 4872-4878
26. Holt, B. D.; Shams, H.; Horst, T. A.; Basu, S.; Rape, A. D.; Wang, Y.-L.; Rohde, G. K.; Mofrad, M. R. K.; Islam, M. F.; Dahl, K. N. Altered Cell Mechanics from the Inside: Dispersed Single Wall Carbon Nanotubes Integrate with and Restructure Actin J. Funct. Biomater. 2012, 3, 398-417
27. Tuszynski, J. A.; Brown, J. A.; Sept, D. Models of the Collective Behavior of Proteins in Cells: Tubulin, Actin and Motor Proteins J. Biol. Phys. 2003, 29, 401-428
28. Macindoe, G.; Mavridis, L.; Venkatraman, V.; Devignes, M.-D.; Ritchie, D. W. HexServer: An FFT-Based Protein Docking Server Powered by Graphics Processors Nucleic Acids Res. 2010, 38, W445-9
29. O'Connell, M. J.; Bachilo, S. M.; Huffman, C. B.; Moore, V. C.; Strano, M. S.; Haroz, E. H.; Rialon, K. L.; Boul, P. J.; Noon, W. H.; Kittrell, C. et al. Band Gap Fluorescence from Individual Single-Walled Carbon Nanotubes Science 2002, 297, 593-596
30. Holt, B. D.; Dahl, K. N.; Islam, M. F. Quantification of Uptake and Localization of Bovine Serum Albumin-Stabilized Single-Wall Carbon Nanotubes in Different Human Cell Types Small 2011, 7, 2348-2355
31. Holt, B. D.; McCorry, M. C.; Boyer, P. D.; Dahl, K. N.; Islam, M. F. Not All Protein-Mediated Single-Wall Carbon Nanotube Dispersions Are Equally Bioactive Nanoscale 2012, 4, 7425-7434
32. Holt, B. D.; Dahl, K. N.; Islam, M. F.; Al, H. E. T. Cells Take Up and Recover from Protein-Stabilized Single-Wall Carbon Nanotubes with Two Distinct Rates ACS Nano 2012, 6, 3481-3490
33. Fagan, J. A.; Becker, M. L.; Chun, J.; Hobbie, E. K. Length Fractionation of Carbon Nanotubes Using Centrifugation Adv. Mater. 2008, 20, 1609-1613
34. Wenseleers, W.; Vlasov, I. I.; Goovaerts, E.; Obraztsova, E. D.; Lobach, A. S.; Bouwen, A. Efficient Isolation and Solubilization of Pristine Single-Walled Nanotubes in Bile Salt Micelles Adv. Funct. Mater. 2004, 14, 1105-1112
35. Dresselhaus, M. S.; Dresselhaus, G.; Saito, R.; Jorio, A. Raman Spectroscopy of Carbon Nanotubes Phys. Rep. 2005, 409, 47-99
36. Bachilo, S. M.; Strano, M. S.; Kittrell, C.; Hauge, R. H.; Smalley, R. E.; Weisman, R. B. Structure-Assigned Optical Spectra of Single-Walled Carbon Nanotubes Science 2002, 298, 2361-2366
37. Kolahi, K. S.; Mofrad, M. R. K. Molecular Mechanics of Filamin's Rod Domain Biophys. J. 2008, 94, 1075-1083
38. Golji, J.; Collins, R.; Mofrad, M. R. K. Molecular Mechanics of the α-actinin Rod Domain: Bending, Torsional, and Extensional Behavior PLoS Comput. Biol. 2009, 5, e1000389
39. Shams, H.; Golji, J.; Mofrad, M. R. K. Molecular Trajectory of Alpha-Actinin Activation Biophys. J. 2012, 103, 2050-2059
40. Phillips, J. C.; Braun, R.; Wang, W.; Gumbart, J.; Tajkhorshid, E.; Villa, E.; Chipot, C.; Skeel, R. D.; Kalé, L.; Schulten, K. Scalable Molecular Dynamics with NAMD J. Comput. Chem. 2005, 26, 1781-1802
41. MacKerell, a D.; Banavali, N.; Foloppe, N. Development and Current Status of the CHARMM Force Field for Nucleic Acids Biopolymers 2001, 56, 257-265
42. Nosé, S. A Unified Formulation of the Constant Temperature Molecular Dynamics Methods J. Chem. Phys. 1984, 81, 511-519
43. Humphrey, W.; Dalke, A.; Schulten, K. VMD-Visual Molecular Dynamics J. Mol. Graphics 1996, 14, 33-38