메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Vertical profiles of bacteria in the tropical and subarctic oceans revealed by pyrosequencing

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA; RNA 16S;

EID: 84893417837     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0079423     Document Type: Article
Times cited : (48)

References (48)
  • 1
    • 0002381096 scopus 로고
    • Bacterial production in fresh and saltwater ecosystems: A cross-system overview
    • Cole JJ, Findlay S, Pace ML (1988) Bacterial production in fresh and saltwater ecosystems: a cross-system overview. Mar Ecol Prog Ser 43: 1-10.
    • (1988) Mar Ecol Prog Ser , vol.43 , pp. 1-10
    • Cole, J.J.1    Findlay, S.2    Pace, M.L.3
  • 2
    • 0001177098 scopus 로고
    • Dominance of bacterial biomass in the Sargasso Sea and its ecological implications
    • Fuhrman JA, Sleeter TD, Carlson CA, Proctor LM (1989) Dominance of bacterial biomass in the Sargasso Sea and its ecological implications. Mar Ecol Prog Ser 57: 207-217.
    • (1989) Mar Ecol Prog Ser , vol.57 , pp. 207-217
    • Fuhrman, J.A.1    Sleeter, T.D.2    Carlson, C.A.3    Proctor, L.M.4
  • 5
    • 0842282075 scopus 로고    scopus 로고
    • Spatio-temporal variability and diversity of water column prokaryotic communities in the eastern North Atlantic
    • DOI 10.1016/S0168-6496(03)00281-2
    • Gallagher JM, Carton MW, Eardly DF, Patching JW (2004) Spatio-temporal variability and diversity of water column prokaryotic communities in the eastern North Atlantic. FEMS Microbiol Ecol 47: 249-262. (Pubitemid 38180560)
    • (2004) FEMS Microbiology Ecology , vol.47 , Issue.2 , pp. 249-262
    • Gallagher, J.M.1    Carton, M.W.2    Eardly, D.F.3    Patching, J.W.4
  • 7
    • 77953594953 scopus 로고    scopus 로고
    • The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes
    • Kirchman DL, Cottrell MT, Lovejoy C (2010) The structure of bacterial communities in the western Arctic Ocean as revealed by pyrosequencing of 16S rRNA genes. Environ Microbiol 12: 1132-1143.
    • (2010) Environ Microbiol , vol.12 , pp. 1132-1143
    • Kirchman, D.L.1    Cottrell, M.T.2    Lovejoy, C.3
  • 8
    • 33744745905 scopus 로고    scopus 로고
    • Marine microbial diversity: Can it be determined?
    • Pedrós-Alió C (2006) Marine microbial diversity: Can it be determined? Trends Microbiol 14: 257-263.
    • (2006) Trends Microbiol , vol.14 , pp. 257-263
    • Pedrós-Alió, C.1
  • 9
    • 33746287146 scopus 로고    scopus 로고
    • In-depth analyses of marine microbial community genomics
    • DOI 10.1016/j.tim.2006.06.008, PII S0966842X06001533
    • Worden AZ, Cuvelier ML, Bartlett DH (2006) In-depth analyses of marine microbial community genomics. Trends Microbiol 14: 331-336. (Pubitemid 44108655)
    • (2006) Trends in Microbiology , vol.14 , Issue.8 , pp. 331-336
    • Worden, A.Z.1    Cuvelier, M.L.2    Bartlett, D.H.3
  • 11
    • 72649092768 scopus 로고    scopus 로고
    • Microbial community structure in the North Pacific Ocean
    • Brown MV, Philip GK, Bunge JA, Smith MC, Bissett A, et al. (2009) Microbial community structure in the North Pacific Ocean. ISME J 3: 1374-1386.
    • (2009) ISME J , vol.3 , pp. 1374-1386
    • Brown, M.V.1    Philip, G.K.2    Bunge, J.A.3    Smith, M.C.4    Bissett, A.5
  • 13
    • 78650868863 scopus 로고    scopus 로고
    • Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA
    • Pommier T, Neal PR, Gasol JM, Coll M, Acinas SG, et al. (2010) Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA. Aquat Microb Ecol 61: 221-233.
    • (2010) Aquat Microb Ecol , vol.61 , pp. 221-233
    • Pommier, T.1    Neal, P.R.2    Gasol, J.M.3    Coll, M.4    Acinas, S.G.5
  • 14
    • 76349119916 scopus 로고    scopus 로고
    • Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
    • Andersson AF, Riemann L, Bertilsson S (2010) Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities. ISME J 4: 171-181.
    • (2010) ISME J , vol.4 , pp. 171-181
    • Andersson, A.F.1    Riemann, L.2    Bertilsson, S.3
  • 15
  • 17
    • 78651277082 scopus 로고    scopus 로고
    • Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing
    • Agogué H, Lamy D, Neal PR, Sogin ML, Herndl GJ (2011) Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing. Mol Ecol 20: 258-274.
    • (2011) Mol Ecol , vol.20 , pp. 258-274
    • Agogué, H.1    Lamy, D.2    Neal, P.R.3    Sogin, M.L.4    Herndl, G.J.5
  • 18
    • 84875878937 scopus 로고    scopus 로고
    • Microbial community diversity of the eastern Atlantic Ocean reveals geographic differences
    • Friedline CJ, Franklin RB, McCallister SL, Rivera MC (2012) Microbial community diversity of the eastern Atlantic Ocean reveals geographic differences. Biogeosciences Discuss 9: 109-150.
    • (2012) Biogeosciences Discuss , vol.9 , pp. 109-150
    • Friedline, C.J.1    Franklin, R.B.2    McCallister, S.L.3    Rivera, M.C.4
  • 20
    • 53849104257 scopus 로고    scopus 로고
    • The rational exploration of microbial diversity
    • Quince C, Curtis TP, Sloan WT (2008) The rational exploration of microbial diversity. ISME J 2: 997-1006.
    • (2008) ISME J , vol.2 , pp. 997-1006
    • Quince, C.1    Curtis, T.P.2    Sloan, W.T.3
  • 21
    • 16344363305 scopus 로고    scopus 로고
    • Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction
    • DOI 10.1002/bit.20347
    • Yu Y, Lee C, Kim J, Hwang S (2005) Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol Bioeng 89: 670-679. (Pubitemid 40470355)
    • (2005) Biotechnology and Bioengineering , vol.89 , Issue.6 , pp. 670-679
    • Yu, Y.1    Lee, C.2    Kim, J.3    Hwang, S.4
  • 22
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • doi: 10.1093/nar/gkn879
    • Cole JR, Wang Q, Cardenas E, Fish J, Chai B, et al. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucl Acids Res 37 (suppl 1): D141-D145.doi: 10.1093/nar/gkn879
    • (2009) Nucl Acids Res , vol.37 , Issue.SUPPL. 1
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5
  • 23
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 25
    • 33644845577 scopus 로고    scopus 로고
    • 'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say?
    • doi:10.1111/j.1462-2920.2006.01017.x
    • de Wit R, Bouvier T (2006) 'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say? Environ Microbiol 8: 755-758. doi:10.1111/j.1462-2920.2006.01017.x
    • (2006) Environ Microbiol , vol.8 , pp. 755-758
    • De Wit, R.1    Bouvier, T.2
  • 26
    • 70449103454 scopus 로고    scopus 로고
    • Vertical distribution and phylogentic composition of bacteria in the Eastern Tropical North Pacific Ocean
    • Ma Y, Zeng YH, Jiao NZ, Shi Y, Hong N (2009) Vertical distribution and phylogentic composition of bacteria in the Eastern Tropical North Pacific Ocean. Microbiol Res 164: 624-633.
    • (2009) Microbiol Res , vol.164 , pp. 624-633
    • Ma, Y.1    Zeng, Y.H.2    Jiao, N.Z.3    Shi, Y.4    Hong, N.5
  • 27
    • 83555166111 scopus 로고    scopus 로고
    • Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified Lagoon, the clipperton atoll (N Pacific)
    • Galand PE, Bourrain M, Maistre ED, Catala P, Desdebises Y, et al. (2012) Phylogenetic and functional diversity of Bacteria and Archaea in a unique stratified Lagoon, the clipperton atoll (N Pacific). FEMS Microbiol Ecol 79: 203-217.
    • (2012) FEMS Microbiol Ecol , vol.79 , pp. 203-217
    • Galand, P.E.1    Bourrain, M.2    Maistre, E.D.3    Catala, P.4    Desdebises, Y.5
  • 29
    • 84355162255 scopus 로고    scopus 로고
    • Microbial community structure of Arctic multilayer sea ice and surface seawater by 454 sequencing of the 16S RNA gene
    • Bowman JS, Rasmussen S, Blom N, Deming JW, Rysgaard S, et al. (2012) Microbial community structure of Arctic multilayer sea ice and surface seawater by 454 sequencing of the 16S RNA gene. ISME J 6: 11-20.
    • (2012) ISME J , vol.6 , pp. 11-20
    • Bowman, J.S.1    Rasmussen, S.2    Blom, N.3    Deming, J.W.4    Rysgaard, S.5
  • 30
    • 25144486755 scopus 로고    scopus 로고
    • Molecular diversity and ecology of microbial plankton
    • DOI 10.1038/nature04158, PII N04158
    • Giovannoni SJ, Stingl U (2005) Molecular diversity and ecology of microbial plankton. Nature 309: 343-348. (Pubitemid 41613489)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 343-348
    • Giovannoni, S.J.1    Stingl, U.2
  • 31
    • 62249199075 scopus 로고    scopus 로고
    • Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean
    • Kataoka T, Hodoki Y, Suzuki K, Saito H, Higashi S (2009) Tempo-spatial patterns of bacterial community composition in the western North Pacific Ocean. J Mar Sys 77: 197-207.
    • (2009) J Mar Sys , vol.77 , pp. 197-207
    • Kataoka, T.1    Hodoki, Y.2    Suzuki, K.3    Saito, H.4    Higashi, S.5
  • 32
    • 0000449745 scopus 로고    scopus 로고
    • Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: A review
    • Numero Spec
    • Partensky F, Blanchot J, Vaulot D (1999) Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. Bull Inst Oceanogr. Monaco Numero Spec 19: 431-449.
    • (1999) Bull Inst Oceanogr. Monaco , vol.19 , pp. 431-449
    • Partensky, F.1    Blanchot, J.2    Vaulot, D.3
  • 34
    • 84863248111 scopus 로고    scopus 로고
    • Phylogenetic composition of Prochlorococcus and Synechococcus in cold eddies of the South China Sea
    • Jing HM, Liu HB (2012) Phylogenetic composition of Prochlorococcus and Synechococcus in cold eddies of the South China Sea. Aquat Microb Ecol 65: 207-219.
    • (2012) Aquat Microb Ecol , vol.65 , pp. 207-219
    • Jing, H.M.1    Liu, H.B.2
  • 35
    • 84879060146 scopus 로고    scopus 로고
    • Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
    • doi: 10.1073/pnas.1307701110
    • Flombaum P, Gallegos JL, Gordillo RA, Rincón J, Zabala LL, et al. (2013) Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus. PNAS doi: 10.1073/pnas.1307701110
    • (2013) PNAS
    • Flombaum, P.1    Gallegos, J.L.2    Gordillo, R.A.3    Rincón, J.4    Zabala, L.L.5
  • 36
    • 0347635417 scopus 로고    scopus 로고
    • Photosynthetic eukaryotes unite: Endosymbiosis connects the dots
    • DOI 10.1002/bies.10376
    • Bhattacharya D, Yoon HS, Hackett JD (2003) Photosynthetic eukaryotes unite: endosymbiosis connects the dots. BioEssays 26: 50-60. (Pubitemid 38095348)
    • (2004) BioEssays , vol.26 , Issue.1 , pp. 50-60
    • Bhattacharya, D.1    Yoon, H.S.2    Hackett, J.D.3
  • 37
    • 79953869974 scopus 로고    scopus 로고
    • Population dynamics of phytoplankton, heterotrophic bacteria, and viruses during the spring bloom in the western subarctic Pacific
    • Suzuki K, Kuwata A, Yoshie N, Shibata A, Kawanobe K, et al. (2011) Population dynamics of phytoplankton, heterotrophic bacteria, and viruses during the spring bloom in the western subarctic Pacific. Deep-Sea Res I 58: 575-589.
    • (2011) Deep-Sea Res I , vol.58 , pp. 575-589
    • Suzuki, K.1    Kuwata, A.2    Yoshie, N.3    Shibata, A.4    Kawanobe, K.5
  • 38
    • 58049142608 scopus 로고    scopus 로고
    • Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW Mediterranean Sea
    • Ghiglione JF, Palacios C, Marty JC, Mével G, Labrune C, et al. (2008) Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW Mediterranean Sea. Biogeosciences 5: 1751-1764.
    • (2008) Biogeosciences , vol.5 , pp. 1751-1764
    • Ghiglione, J.F.1    Palacios, C.2    Marty, J.C.3    Mével, G.4    Labrune, C.5
  • 39
    • 33744923681 scopus 로고    scopus 로고
    • Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition
    • Hewson I, Steele JA, Capone DG, Fuhrman JA (2006) Remarkable heterogeneity in meso- and bathypelagic bacterioplankton assemblage composition. Limnol Oceanogr 51: 1274-1283. (Pubitemid 43845283)
    • (2006) Limnology and Oceanography , vol.51 , Issue.3 , pp. 1274-1283
    • Hewson, I.1    Steele, J.A.2    Capone, D.G.3    Fuhrman, J.A.4
  • 40
    • 0035283902 scopus 로고    scopus 로고
    • Terminal-restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes
    • DOI 10.1016/S0167-7012(00)00247-5, PII S0167701200002475
    • Moeseneder MM, Winter C, Arrieta JM, Herndl GJ (2001) Terminal restriction fragment length polymorphism (T-RFLP) screening of a marine archaeal clone library to determine the different phylotypes. J Microbiol Meth 44: 159-172. (Pubitemid 32124782)
    • (2001) Journal of Microbiological Methods , vol.44 , Issue.2 , pp. 159-172
    • Moeseneder, M.M.1    Winter, C.2    Arrieta, J.M.3    Herndl, G.J.4
  • 41
    • 41849142283 scopus 로고    scopus 로고
    • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific
    • DOI 10.1111/j.1462-2920.2007.01539.x
    • Stevens H, Ulloa O (2008) Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific. Environ Microbiol 10: 1244-1259. (Pubitemid 351499241)
    • (2008) Environmental Microbiology , vol.10 , Issue.5 , pp. 1244-1259
    • Stevens, H.1    Ulloa, O.2
  • 42
    • 84864223229 scopus 로고    scopus 로고
    • Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone
    • Bryant JA, Stewart FJ, Eppley JM, Delong EF (2012) Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone. Ecology 93: 1659-1673.
    • (2012) Ecology , vol.93 , pp. 1659-1673
    • Bryant, J.A.1    Stewart, F.J.2    Eppley, J.M.3    Delong, E.F.4
  • 43
    • 67349131571 scopus 로고    scopus 로고
    • Oxygen minimum zones (OMZs) in the modern ocean
    • Paulmier A, Ruiz-Pino D (2009) Oxygen minimum zones (OMZs) in the modern ocean. Prog Oceanogr 80: 113-128.
    • (2009) Prog Oceanogr , vol.80 , pp. 113-128
    • Paulmier, A.1    Ruiz-Pino, D.2
  • 45
    • 70349454241 scopus 로고    scopus 로고
    • Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: Cloning, expression, characterization and function analysis of the C-terminal PPC domains
    • Yan BQ, Chen XL, Hou XY, He H, Zhou BC, et al. (2009) Molecular analysis of the gene encoding a cold-adapted halophilic subtilase from deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913: cloning, expression, characterization and function analysis of the C-terminal PPC domains. Extremophiles 13: 725-733.
    • (2009) Extremophiles , vol.13 , pp. 725-733
    • Yan, B.Q.1    Chen, X.L.2    Hou, X.Y.3    He, H.4    Zhou, B.C.5
  • 48
    • 84860488672 scopus 로고    scopus 로고
    • Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom
    • Teeling H, Fuchs BM, Becher D, Klockow C, Gardebrecht A, et al. (2012) Substrate-controlled succession of marine bacterioplankton populations induced by a phytoplankton bloom. Science 336: 608-611.
    • (2012) Science , vol.336 , pp. 608-611
    • Teeling, H.1    Fuchs, B.M.2    Becher, D.3    Klockow, C.4    Gardebrecht, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.