-
1
-
-
74149093863
-
Microbial community of acetate utilizing denitrifiers in aerobic granules
-
Adav, S.S., Lee, D.J., and Lai, J. (2010) Microbial community of acetate utilizing denitrifiers in aerobic granules. Appl Microbiol Biotechnol 85: 753-762.
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, pp. 753-762
-
-
Adav, S.S.1
Lee, D.J.2
Lai, J.3
-
2
-
-
50049126125
-
Resistance, resilience, and redundancy in microbial communities
-
Allison, S.D., and Martiny, J.B.H. (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci U S A 105: 11512-11519.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 11512-11519
-
-
Allison, S.D.1
Martiny, J.B.H.2
-
3
-
-
33847216554
-
Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration
-
Avrahami, S., and Bohannan, B.J.M. (2007) Response of Nitrosospira sp. strain AF-like ammonia oxidizers to changes in temperature, soil moisture content, and fertilizer concentration. Appl Environ Microbiol 73: 1166-1173.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1166-1173
-
-
Avrahami, S.1
Bohannan, B.J.M.2
-
4
-
-
77956881490
-
Soil microbial abundance and diversity along a low precipitation gradient
-
Bachar, A., Al-Ashhab, A., Soares, M.I.M., Sklarz, M.Y., Angel, R., Ungar, E.D., and Gillor, O. (2010) Soil microbial abundance and diversity along a low precipitation gradient. Microb Ecol 60: 453-461.
-
(2010)
Microb Ecol
, vol.60
, pp. 453-461
-
-
Bachar, A.1
Al-Ashhab, A.2
Soares, M.I.M.3
Sklarz, M.Y.4
Angel, R.5
Ungar, E.D.6
Gillor, O.7
-
5
-
-
0032803075
-
Field management effects on soil enzyme activities
-
Bandick, A.K., and Dick, R.P. (1999) Field management effects on soil enzyme activities. Soil Biol Biochem 31: 1471-1479.
-
(1999)
Soil Biol Biochem
, vol.31
, pp. 1471-1479
-
-
Bandick, A.K.1
Dick, R.P.2
-
6
-
-
84869168126
-
Soil degradation and rehabilitation: microorganisms and functionality
-
Insam, H., Franke-Whittle, H.I., and Goberna, M. (eds). Berlin, Germany: Springer
-
Bastida, F., Hernandez, T., and Garcia, C. (2010) Soil degradation and rehabilitation: microorganisms and functionality. In Microbes at Work. From Wastes to Resources. Insam, H., Franke-Whittle, H.I., and Goberna, M. (eds). Berlin, Germany: Springer, pp. 253-270.
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 253-270
-
-
Bastida, F.1
Hernandez, T.2
Garcia, C.3
-
7
-
-
84878739632
-
Phylogenetic and functional changes in the microbial community of long-term restored soils under semiarid climate
-
(in press)
-
Bastida, F., Hernández, T., Albaladejo, J., and García, C. (2013) Phylogenetic and functional changes in the microbial community of long-term restored soils under semiarid climate. Soil Biol Biochem (in press), http://dx.doi.org/10.1016/j.soilbio.2013.04.022.
-
(2013)
Soil Biol Biochem
-
-
Bastida, F.1
Hernández, T.2
Albaladejo, J.3
García, C.4
-
8
-
-
33747871720
-
Variation of enzyme activities, CO 2 evolution and redox potential in an Eutric Histosol irrigated with wastewater and tap water
-
Brzezinska, M., Tiwari, S., Stepniewska, Z., Nosalewicz, M., Bennicelli, R., and Samborska, A. (2006) Variation of enzyme activities, CO 2 evolution and redox potential in an Eutric Histosol irrigated with wastewater and tap water. Biol Fertil Soils 43: 131-135.
-
(2006)
Biol Fertil Soils
, vol.43
, pp. 131-135
-
-
Brzezinska, M.1
Tiwari, S.2
Stepniewska, Z.3
Nosalewicz, M.4
Bennicelli, R.5
Samborska, A.6
-
9
-
-
0347122289
-
Dehydrogenase and catalase activity of soil irrigated with municipal wastewater
-
Brzezińska, M., Stepniewska, Z., and Stepniewski, W. (2001) Dehydrogenase and catalase activity of soil irrigated with municipal wastewater. Pol J Environ Stud 10: 307-311.
-
(2001)
Pol J Environ Stud
, vol.10
, pp. 307-311
-
-
Brzezińska, M.1
Stepniewska, Z.2
Stepniewski, W.3
-
10
-
-
77954535364
-
Bioremediation of soil contaminated with pentachlorophenol by Anthracophyllum discolor and its effect on soil microbial community
-
Cea, M., Jorquera, M., Rubilar, O., Langer, H., Tortella, G., and Diez, M. (2010) Bioremediation of soil contaminated with pentachlorophenol by Anthracophyllum discolor and its effect on soil microbial community. J Hazard Mater 181: 315-323.
-
(2010)
J Hazard Mater
, vol.181
, pp. 315-323
-
-
Cea, M.1
Jorquera, M.2
Rubilar, O.3
Langer, H.4
Tortella, G.5
Diez, M.6
-
11
-
-
84869215588
-
Xanthomonads
-
Timmis, K.N., McGenity, T., van der Meer, J.R., and de Lorenzo, V. (eds). New York, USA: Springer
-
Chang, K.H., and Zylstra, J.G. (2010) Xanthomonads. In Handbook of Hydrocarbon and Lipid Microbiology. Timmis, K.N., McGenity, T., van der Meer, J.R., and de Lorenzo, V. (eds). New York, USA: Springer, pp. 1805-1811.
-
(2010)
Handbook of Hydrocarbon and Lipid Microbiology
, pp. 1805-1811
-
-
Chang, K.H.1
Zylstra, J.G.2
-
12
-
-
51849115174
-
Soil enzyme activities of long-term reclaimed wastewater-irrigated soils
-
Chen, W., Wu, L., Frankenberger, W.T., Jr, and Chang, A.C. (2008) Soil enzyme activities of long-term reclaimed wastewater-irrigated soils. J Environ Qual 37: S36-S42.
-
(2008)
J Environ Qual
, vol.37
-
-
Chen, W.1
Wu, L.2
Frankenberger Jr., W.T.3
Chang, A.C.4
-
13
-
-
33947232804
-
Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition
-
Cleveland, C.C., Nemergut, D.R., Schmidt, S.K., and Townsend, A.R. (2007) Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition. Biogeochemistry 82: 229-240.
-
(2007)
Biogeochemistry
, vol.82
, pp. 229-240
-
-
Cleveland, C.C.1
Nemergut, D.R.2
Schmidt, S.K.3
Townsend, A.R.4
-
14
-
-
67549086723
-
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland
-
Cruz-Martinez, K., Suttle, K.B., Brodie, E.L., Power, M.E., Andersen, G.L., and Banfield, J.F. (2009) Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J 3: 738-744.
-
(2009)
ISME J
, vol.3
, pp. 738-744
-
-
Cruz-Martinez, K.1
Suttle, K.B.2
Brodie, E.L.3
Power, M.E.4
Andersen, G.L.5
Banfield, J.F.6
-
15
-
-
45149095760
-
Molecular analysis of bacterial community succession during prolonged compost curing
-
Danon, M., Franke-Whittle, I.H., Insam, H., Chen, Y., and Hadar, Y. (2008) Molecular analysis of bacterial community succession during prolonged compost curing. FEMS Microb Ecol 65: 133-144.
-
(2008)
FEMS Microb Ecol
, vol.65
, pp. 133-144
-
-
Danon, M.1
Franke-Whittle, I.H.2
Insam, H.3
Chen, Y.4
Hadar, Y.5
-
16
-
-
0033852272
-
Soil health and sustainability: managing the biotic component of soil quality
-
Doran, J.W., and Zeiss, M.R. (2000) Soil health and sustainability: managing the biotic component of soil quality. Appl Soil Ecol 15: 3-11.
-
(2000)
Appl Soil Ecol
, vol.15
, pp. 3-11
-
-
Doran, J.W.1
Zeiss, M.R.2
-
17
-
-
53749097505
-
Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP)
-
URL
-
Dowd, S.E., Wolcott, R.D., Sun, Y., McKeehan, T., Smith, E., and Rhoads, D. (2008) Polymicrobial nature of chronic diabetic foot ulcer biofilm infections determined using bacterial tag encoded FLX amplicon pyrosequencing (bTEFAP). PLoS ONE 3: e3326. URL http://dx.doi.org/10.1371%2Fjournal.pone.0003326.
-
(2008)
PLoS ONE
, vol.3
-
-
Dowd, S.E.1
Wolcott, R.D.2
Sun, Y.3
McKeehan, T.4
Smith, E.5
Rhoads, D.6
-
18
-
-
0031284508
-
Species assemblages and indicator species: the need for a flexible asymmetrical approach
-
Dufrêne, M., and Legendre, P. (1997) Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecol Monogr 67: 345-366.
-
(1997)
Ecol Monogr
, vol.67
, pp. 345-366
-
-
Dufrêne, M.1
Legendre, P.2
-
19
-
-
77950596380
-
Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil
-
Eilers, K.G., Lauber, C.L., Knight, R., and Fierer, N. (2010) Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil. Soil Biol Biochem 42: 896-903.
-
(2010)
Soil Biol Biochem
, vol.42
, pp. 896-903
-
-
Eilers, K.G.1
Lauber, C.L.2
Knight, R.3
Fierer, N.4
-
20
-
-
80255137565
-
Microbial activity and organic matter dynamics during 4 years of irrigation with treated wastewater
-
Elifantz, H., Kautsky, L., Mor-Yosef, M., Tarchitzky, J., Bar-Tal, A., Chen, Y., and Minz, D. (2011) Microbial activity and organic matter dynamics during 4 years of irrigation with treated wastewater. Microb Ecol 62: 1-9.
-
(2011)
Microb Ecol
, vol.62
, pp. 1-9
-
-
Elifantz, H.1
Kautsky, L.2
Mor-Yosef, M.3
Tarchitzky, J.4
Bar-Tal, A.5
Chen, Y.6
Minz, D.7
-
21
-
-
1642487674
-
The survival of Escherichia coli, faecal coliforms and enterobacteriaceae in general in soil treated with sludge from wastewater treatment plants
-
Estrada, I.B., Aller, A., Aller, F., Gómez, X., and Morán, A. (2004) The survival of Escherichia coli, faecal coliforms and enterobacteriaceae in general in soil treated with sludge from wastewater treatment plants. Bioresour Technol 93: 191-198.
-
(2004)
Bioresour Technol
, vol.93
, pp. 191-198
-
-
Estrada, I.B.1
Aller, A.2
Aller, F.3
Gómez, X.4
Morán, A.5
-
22
-
-
0037270927
-
Influence of drying-rewetting frequency on soil bacterial community structure
-
Fierer, N., Schimel, J., and Holden, P. (2003) Influence of drying-rewetting frequency on soil bacterial community structure. Microb Ecol 45: 63-71.
-
(2003)
Microb Ecol
, vol.45
, pp. 63-71
-
-
Fierer, N.1
Schimel, J.2
Holden, P.3
-
23
-
-
33947236971
-
Toward an ecological classification of soil bacteria
-
Fierer, N., Bradford, M.A., and Jackson, R.B. (2007) Toward an ecological classification of soil bacteria. Ecology 88: 1354-1364.
-
(2007)
Ecology
, vol.88
, pp. 1354-1364
-
-
Fierer, N.1
Bradford, M.A.2
Jackson, R.B.3
-
24
-
-
70349902095
-
Searching for unifying principles in soil ecology
-
Fierer, N., Grandy, A.S., Six, J., and Paul, E.A. (2009) Searching for unifying principles in soil ecology. Soil Biol Biochem 41: 2249-2256.
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 2249-2256
-
-
Fierer, N.1
Grandy, A.S.2
Six, J.3
Paul, E.A.4
-
25
-
-
84871826193
-
Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
-
Fierer, N., Leff, J.W., Adams, B.J., Nielsen, U.N., Bates, S.T., Lauber, C.L., etal. (2012) Cross-biome metagenomic analyses of soil microbial communities and their functional attributes. Proc Natl Acad Sci U S A 109: 21390-21395.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 21390-21395
-
-
Fierer, N.1
Leff, J.W.2
Adams, B.J.3
Nielsen, U.N.4
Bates, S.T.5
Lauber, C.L.6
-
26
-
-
0348008993
-
Characterization of effects of a long-term wastewater irrigation on soil quality by microbiological and biochemical parameters
-
Filip, Z., Kanazawa, S., and Berthelin, J. (1999) Characterization of effects of a long-term wastewater irrigation on soil quality by microbiological and biochemical parameters. J Plant Nutr Soil Sci 162: 409-413.
-
(1999)
J Plant Nutr Soil Sci
, vol.162
, pp. 409-413
-
-
Filip, Z.1
Kanazawa, S.2
Berthelin, J.3
-
27
-
-
0033928314
-
Effects of long-term waste water irrigation on soil organic matter, soil microbial biomass and its activities in central Mexico
-
Friedel, J.K., Langer, T., Siebe, C., and Stahr, K. (2000) Effects of long-term waste water irrigation on soil organic matter, soil microbial biomass and its activities in central Mexico. Biol Fertil Soils 31: 414-421.
-
(2000)
Biol Fertil Soils
, vol.31
, pp. 414-421
-
-
Friedel, J.K.1
Langer, T.2
Siebe, C.3
Stahr, K.4
-
28
-
-
0036195306
-
Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus
-
Furlong, M.A., Singleton, D.R., Coleman, D.C., and Whitman, W.B. (2002) Molecular and culture-based analyses of prokaryotic communities from an agricultural soil and the burrows and casts of the earthworm Lumbricus rubellus. Appl Environ Microbiol 68: 1265-1279.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1265-1279
-
-
Furlong, M.A.1
Singleton, D.R.2
Coleman, D.C.3
Whitman, W.B.4
-
29
-
-
46249085253
-
Effect of 2, 4, 6-trinitrotoluene on soil bacterial communities
-
George, I., Eyers, L., Stenuit, B., and Agathos, S.N. (2008) Effect of 2, 4, 6-trinitrotoluene on soil bacterial communities. J Ind Microbiol Biotechnol 35: 225-236.
-
(2008)
J Ind Microbiol Biotechnol
, vol.35
, pp. 225-236
-
-
George, I.1
Eyers, L.2
Stenuit, B.3
Agathos, S.N.4
-
30
-
-
34748886657
-
PAST: paleontological statistics software package for education and data analysis
-
URL
-
Hammer, Ø., Harper, D.A.T., and Ryan, P.D. (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4: 9. URL http://palaeo-electronica.org/2001_1/past/issue1_01.htm.
-
(2001)
Palaeontol Electron
, vol.4
, pp. 9
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.D.3
-
31
-
-
77951243440
-
Soil DNA evidence for altered microbial diversity after long-term application of municipal wastewater
-
Hidri, Y., Bouziri, L., Maron, P.A., Anane, M., Jedidi, N., Hassan, A., and Ranjard, L. (2010) Soil DNA evidence for altered microbial diversity after long-term application of municipal wastewater. Agron Sustainable Dev 30: 423-431.
-
(2010)
Agron Sustainable Dev
, vol.30
, pp. 423-431
-
-
Hidri, Y.1
Bouziri, L.2
Maron, P.A.3
Anane, M.4
Jedidi, N.5
Hassan, A.6
Ranjard, L.7
-
32
-
-
26244435278
-
Competing factors of compost concentration and proximity to root affect the distribution of streptomycetes
-
Inbar, E., Green, S.J., Hadar, Y., and Minz, D. (2005) Competing factors of compost concentration and proximity to root affect the distribution of streptomycetes. Microb Ecol 50: 73-81.
-
(2005)
Microb Ecol
, vol.50
, pp. 73-81
-
-
Inbar, E.1
Green, S.J.2
Hadar, Y.3
Minz, D.4
-
33
-
-
53649103674
-
Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems
-
Jangid, K., Williams, M.A., Franzluebbers, A.J., Sanderlin, J.S., Reeves, J.H., Jenkins, M.B., etal. (2008) Relative impacts of land-use, management intensity and fertilization upon soil microbial community structure in agricultural systems. Soil Biol Biochem 40: 2843-2853.
-
(2008)
Soil Biol Biochem
, vol.40
, pp. 2843-2853
-
-
Jangid, K.1
Williams, M.A.2
Franzluebbers, A.J.3
Sanderlin, J.S.4
Reeves, J.H.5
Jenkins, M.B.6
-
34
-
-
77955171451
-
Taxon-specific responses of soil bacteria to the addition of low level C inputs
-
Jenkins, S.N., Rushton, S.P., Lanyon, C.V., Whiteley, A.S., Waite, I.S., Brookes, P.C., etal. (2010) Taxon-specific responses of soil bacteria to the addition of low level C inputs. Soil Biol Biochem 42: 1624-1631.
-
(2010)
Soil Biol Biochem
, vol.42
, pp. 1624-1631
-
-
Jenkins, S.N.1
Rushton, S.P.2
Lanyon, C.V.3
Whiteley, A.S.4
Waite, I.S.5
Brookes, P.C.6
-
35
-
-
43949144945
-
Effects of treated wastewater irrigation on the dissolved and soil organic carbon in Israeli soils
-
Jueschke, E., Marschner, B., Tarchitzky, J., and Chen, Y. (2008) Effects of treated wastewater irrigation on the dissolved and soil organic carbon in Israeli soils. Water Sci Technol 57: 727.
-
(2008)
Water Sci Technol
, vol.57
, pp. 727
-
-
Jueschke, E.1
Marschner, B.2
Tarchitzky, J.3
Chen, Y.4
-
36
-
-
0029473627
-
DNA probe analysis of microbial community selected in field by long-term 2, 4-D application
-
Ka, J.O., Burauel, P., Bronson, J.A., Holben, W.E., and Tiedje, J.M. (1995) DNA probe analysis of microbial community selected in field by long-term 2, 4-D application. Soil Sci Soc Am J 59: 1581-1587.
-
(1995)
Soil Sci Soc Am J
, vol.59
, pp. 1581-1587
-
-
Ka, J.O.1
Burauel, P.2
Bronson, J.A.3
Holben, W.E.4
Tiedje, J.M.5
-
37
-
-
8744287762
-
The lithotrophic ammonia-oxidizing bacteria
-
Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackebrandt, E. (eds). New York, USA: Springer
-
Koops, H.P., Purkhold, U., Pommerening-Röser, A., Timmermann, G., and Wagner, M. (2006) The lithotrophic ammonia-oxidizing bacteria. In The Prokaryotes. Vol. 5. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackebrandt, E. (eds). New York, USA: Springer, pp. 778-811.
-
(2006)
The Prokaryotes
, vol.5
, pp. 778-811
-
-
Koops, H.P.1
Purkhold, U.2
Pommerening-Röser, A.3
Timmermann, G.4
Wagner, M.5
-
38
-
-
48749108279
-
Resource availability influences the diversity of a functional group of heterotrophic soil bacteria
-
Langenheder, S., and Prosser, J.I. (2008) Resource availability influences the diversity of a functional group of heterotrophic soil bacteria. Environ Microbiol 10: 2245-2256.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2245-2256
-
-
Langenheder, S.1
Prosser, J.I.2
-
39
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber, C.L., Hamady, M., Knight, R., and Fierer, N. (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5111-5120
-
-
Lauber, C.L.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
40
-
-
55849132641
-
Sphingopyxis ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea
-
Lee, M., Ten, L.N., Lee, H.W., Oh, H.W., Im, W.T., and Lee, S.T. (2008) Sphingopyxis ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea. Int J System Evol Microbiol 58: 2342-2347.
-
(2008)
Int J System Evol Microbiol
, vol.58
, pp. 2342-2347
-
-
Lee, M.1
Ten, L.N.2
Lee, H.W.3
Oh, H.W.4
Im, W.T.5
Lee, S.T.6
-
41
-
-
84893011927
-
-
Halophyte uses in different climates I: ecological and ecophysiological studies: Proceedings of the 3rd Seminar of the EU Concerted Action Group IC 18CT 96-0055, Florence, Italy, 20 July, 1998. Leiden, the Netherlands: Backhuys Publishers
-
Lieth, H., and Hamdy, A. (1999) Halophyte uses in different climates I: ecological and ecophysiological studies: Proceedings of the 3rd Seminar of the EU Concerted Action Group IC 18CT 96-0055, Florence, Italy, 20 July, 1998. Leiden, the Netherlands: Backhuys Publishers, 2-17.
-
(1999)
, pp. 2-17
-
-
Lieth, H.1
Hamdy, A.2
-
42
-
-
0028993676
-
Soil microbial biomass and activity in long-term grassland: effects of management changes
-
Lovell, R.D., Jarvis, S.C., and Bardgett, R.D. (1995) Soil microbial biomass and activity in long-term grassland: effects of management changes. Soil Biol Biochem 27: 969-975.
-
(1995)
Soil Biol Biochem
, vol.27
, pp. 969-975
-
-
Lovell, R.D.1
Jarvis, S.C.2
Bardgett, R.D.3
-
43
-
-
0032861481
-
Rapid response of soil microbial communities from conventional, low input, and organic farming systems to a wet/dry cycle
-
Lundquist, E.J., Scow, K.M., Jackson, L.E., Uesugi, S.L., and Johnson, C.R. (1999) Rapid response of soil microbial communities from conventional, low input, and organic farming systems to a wet/dry cycle. Soil Biol Biochem 31: 1661-1675.
-
(1999)
Soil Biol Biochem
, vol.31
, pp. 1661-1675
-
-
Lundquist, E.J.1
Scow, K.M.2
Jackson, L.E.3
Uesugi, S.L.4
Johnson, C.R.5
-
44
-
-
0004294399
-
-
10th ed. Pearson Education. Upper Saddle River, NJ, USA: Pearson Education, Inc
-
Madigan, M.T., Martinko, J.M., and Parker, J. (2003) Brock Biology of Microorganisms. 10th ed. Pearson Education. Upper Saddle River, NJ, USA: Pearson Education, Inc.
-
(2003)
Brock Biology of Microorganisms
-
-
Madigan, M.T.1
Martinko, J.M.2
Parker, J.3
-
45
-
-
84867656229
-
Long-term effects of irrigation with waste water on soil AM fungi diversity and microbial activities: the implications for agro-ecosystem resilience
-
doi:10.1371/journal.pone.0047680
-
del Mar Alguacil, M., Torrecillas, E., Torres, P., García-Orenes, F., and Roldán, A. (2012) Long-term effects of irrigation with waste water on soil AM fungi diversity and microbial activities: the implications for agro-ecosystem resilience. PLoS ONE 7: e47680. doi:10.1371/journal.pone.0047680.
-
(2012)
PLoS ONE
, vol.7
-
-
del Mar Alguacil, M.1
Torrecillas, E.2
Torres, P.3
García-Orenes, F.4
Roldán, A.5
-
46
-
-
46149092525
-
Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments
-
Meier, C., Wehrli, B., and van der Meer, J.R. (2008) Seasonal fluctuations of bacterial community diversity in agricultural soil and experimental validation by laboratory disturbance experiments. Microb Ecol 56: 210-222.
-
(2008)
Microb Ecol
, vol.56
, pp. 210-222
-
-
Meier, C.1
Wehrli, B.2
van der Meer, J.R.3
-
47
-
-
0037148742
-
Influence of irrigation with lagooned urban wastewater on chemical and microbiological soil parameters in a citrus orchard under Mediterranean condition
-
Meli, S., Porto, M., Belligno, A., Bufo, S.A., Mazzatura, A., and Scopa, A. (2002) Influence of irrigation with lagooned urban wastewater on chemical and microbiological soil parameters in a citrus orchard under Mediterranean condition. Sci Total Environ 285: 69-77.
-
(2002)
Sci Total Environ
, vol.285
, pp. 69-77
-
-
Meli, S.1
Porto, M.2
Belligno, A.3
Bufo, S.A.4
Mazzatura, A.5
Scopa, A.6
-
48
-
-
0001868071
-
Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities
-
Akkermans, A.D.L., van Elsas, J.D., and de Bruijn, F.J. (eds). Dordrecht, the Netherlands: Kluwer Academic Publishing
-
Muyzer, G., Hottenträger, S., Teske, A., and Wawer, C. (1996) Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities. In Molecular Microbial Ecology Manual. Vol. 3. Akkermans, A.D.L., van Elsas, J.D., and de Bruijn, F.J. (eds). Dordrecht, the Netherlands: Kluwer Academic Publishing, pp. 1-23.
-
(1996)
Molecular Microbial Ecology Manual
, vol.3
, pp. 1-23
-
-
Muyzer, G.1
Hottenträger, S.2
Teske, A.3
Wawer, C.4
-
49
-
-
43349085580
-
Impact of irrigation water quality on soil nitrifying and total bacterial communities
-
Ndour, N.Y.B., Baudoin, E., Guissé, A., Seck, M., Khouma, M., and Brauman, A. (2008) Impact of irrigation water quality on soil nitrifying and total bacterial communities. Biol Fertil Soils 44: 797-803.
-
(2008)
Biol Fertil Soils
, vol.44
, pp. 797-803
-
-
Ndour, N.Y.B.1
Baudoin, E.2
Guissé, A.3
Seck, M.4
Khouma, M.5
Brauman, A.6
-
50
-
-
70349907090
-
Comparison of effects of compost amendment and of single-strain inoculation on root bacterial communities of young cucumber seedlings
-
Ofek, M., Hadar, Y., and Minz, D. (2009) Comparison of effects of compost amendment and of single-strain inoculation on root bacterial communities of young cucumber seedlings. Appl Environ Microbiol 75: 6441-6450.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 6441-6450
-
-
Ofek, M.1
Hadar, Y.2
Minz, D.3
-
51
-
-
0035432486
-
Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil
-
Oved, T., Shaviv, A., Goldrath, T., Mandelbaum, R.T., and Minz, D. (2001) Influence of effluent irrigation on community composition and function of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 67: 3426-3433.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3426-3433
-
-
Oved, T.1
Shaviv, A.2
Goldrath, T.3
Mandelbaum, R.T.4
Minz, D.5
-
52
-
-
0034965971
-
Soil microbial community responses to dairy manure or ammonium nitrate applications
-
Peacock, A.D., Mullen, M.D., Ringelberg, D.B., Tyler, D.D., Hedrick, D.B., Gale, P.M., and White, D.C. (2001) Soil microbial community responses to dairy manure or ammonium nitrate applications. Soil Biol Biochem 33: 1011-1019.
-
(2001)
Soil Biol Biochem
, vol.33
, pp. 1011-1019
-
-
Peacock, A.D.1
Mullen, M.D.2
Ringelberg, D.B.3
Tyler, D.D.4
Hedrick, D.B.5
Gale, P.M.6
White, D.C.7
-
53
-
-
14644389378
-
Human pharmaceuticals, hormones, and personal care product ingredients in runoff from agricultural fields irrigated with treated wastewater
-
and (Mel)
-
Pedersen, J.A., Soliman, M., and Suffet, I.H. (Mel) (2005) Human pharmaceuticals, hormones, and personal care product ingredients in runoff from agricultural fields irrigated with treated wastewater. J Agric Food Chem 53: 1625-1632.
-
(2005)
J Agric Food Chem
, vol.53
, pp. 1625-1632
-
-
Pedersen, J.A.1
Soliman, M.2
Suffet, I.H.3
-
54
-
-
71249135203
-
Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree
-
Philippot, L., Bru, D., Saby, N., Čuhel, J., Arrouays, D., Šimek, M., and Hallin, S. (2009) Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree. Environ Microbiol 11: 3096-3104.
-
(2009)
Environ Microbiol
, vol.11
, pp. 3096-3104
-
-
Philippot, L.1
Bru, D.2
Saby, N.3
Čuhel, J.4
Arrouays, D.5
Šimek, M.6
Hallin, S.7
-
55
-
-
34247221045
-
The role of ecological theory in microbial ecology
-
Prosser, J.I., Bohannan, B.J.M., Curtis, T.P., Ellis, R.J., Firestone, M.K., Freckleton, R.P., etal. (2007) The role of ecological theory in microbial ecology. Nat Rev Microbiol 5: 384-392.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 384-392
-
-
Prosser, J.I.1
Bohannan, B.J.M.2
Curtis, T.P.3
Ellis, R.J.4
Firestone, M.K.5
Freckleton, R.P.6
-
56
-
-
0018458353
-
Effect of paper factory effluents on soil and crop plants
-
Rajannan, G., and Oblisami, G. (1979) Effect of paper factory effluents on soil and crop plants. Indian J Environ Health 21: 120-130.
-
(1979)
Indian J Environ Health
, vol.21
, pp. 120-130
-
-
Rajannan, G.1
Oblisami, G.2
-
57
-
-
0036316283
-
Characteristics, and carbon and nitrogen dynamics in soil irrigated with wastewater for different lengths of time
-
Ramirez-Fuentes, E., Lucho-Constantino, C., Escamilla-Silva, E., and Dendooven, L. (2002) Characteristics, and carbon and nitrogen dynamics in soil irrigated with wastewater for different lengths of time. Bioresour Technol 85: 179-187.
-
(2002)
Bioresour Technol
, vol.85
, pp. 179-187
-
-
Ramirez-Fuentes, E.1
Lucho-Constantino, C.2
Escamilla-Silva, E.3
Dendooven, L.4
-
58
-
-
62149125541
-
Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing
-
Sanapareddy, N., Hamp, T.J., Gonzalez, L.C., Hilger, H.A., Fodor, A.A., and Clinton, S.M. (2009) Molecular diversity of a North Carolina wastewater treatment plant as revealed by pyrosequencing. Appl Environ Microbiol 75: 1688-1696.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 1688-1696
-
-
Sanapareddy, N.1
Hamp, T.J.2
Gonzalez, L.C.3
Hilger, H.A.4
Fodor, A.A.5
Clinton, S.M.6
-
59
-
-
78650678238
-
Soil microbial diversity in the vicinity of a Negev Desert shrub - Reaumuria negevensis
-
Saul-Tcherkas, V., and Steinberger, Y. (2011) Soil microbial diversity in the vicinity of a Negev Desert shrub - Reaumuria negevensis. Microb Ecol 61: 64-81.
-
(2011)
Microb Ecol
, vol.61
, pp. 64-81
-
-
Saul-Tcherkas, V.1
Steinberger, Y.2
-
60
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P.D., Westcott, L.S., Ryabin, T., Hall, R.J., Hartmann, M., Hollister, B.E., etal. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, L.S.2
Ryabin, T.3
Hall, R.J.4
Hartmann, M.5
Hollister, B.E.6
-
61
-
-
34547647777
-
Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil
-
Schmidt, S.K., Costello, E.K., Nemergut, D.R., Cleveland, C.C., Reed, S.C., Weintraub, M.N., etal. (2007) Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil. Ecology 88: 1379-1385.
-
(2007)
Ecology
, vol.88
, pp. 1379-1385
-
-
Schmidt, S.K.1
Costello, E.K.2
Nemergut, D.R.3
Cleveland, C.C.4
Reed, S.C.5
Weintraub, M.N.6
-
62
-
-
77950614016
-
Sphingopyxis ummariensis sp. nov., isolated from a hexachlorocyclohexane dump site
-
Sharma, P., Verma, M., Bala, K., Nigam, A., and Lal, R. (2010) Sphingopyxis ummariensis sp. nov., isolated from a hexachlorocyclohexane dump site. Int J System Evol Microbiol 60: 780-784.
-
(2010)
Int J System Evol Microbiol
, vol.60
, pp. 780-784
-
-
Sharma, P.1
Verma, M.2
Bala, K.3
Nigam, A.4
Lal, R.5
-
63
-
-
84886012799
-
Health considerations in the recycling of water and use of treated wastewater in agriculture and other non-potable purposes
-
In, Levy, J.G., Fine, P., and Bar-Tal, A. (eds). Oxford, UK: Wiley-Blackwell. URL
-
Shuval, H. (2010) Health considerations in the recycling of water and use of treated wastewater in agriculture and other non-potable purposes. In Treated Wastewater in Agriculture, Levy, J.G., Fine, P., and Bar-Tal, A. (eds). Oxford, UK: Wiley-Blackwell, pp. 51-76. URL http://dx.doi.org/10.1002/9781444328561.ch2.
-
(2010)
Treated Wastewater in Agriculture
, pp. 51-76
-
-
Shuval, H.1
-
64
-
-
0036861385
-
Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California
-
Steenwerth, K.L., Jackson, L.E., Calderón, F.J., Stromberg, M.R., and Scow, K.M. (2002) Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California. Soil Biol Biochem 34: 1599-1611.
-
(2002)
Soil Biol Biochem
, vol.34
, pp. 1599-1611
-
-
Steenwerth, K.L.1
Jackson, L.E.2
Calderón, F.J.3
Stromberg, M.R.4
Scow, K.M.5
-
65
-
-
84856369187
-
Microbial diversity determines the invasion of soil by a bacterial pathogen
-
Van Elsas, J.D., Chiurazzi, M., Mallon, C.A., Elhottov, D., Krivstuufek, V., and Salles, J.F. (2012) Microbial diversity determines the invasion of soil by a bacterial pathogen. Proc Natl Acad Sci U S A 109: 1159-1164.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1159-1164
-
-
Van Elsas, J.D.1
Chiurazzi, M.2
Mallon, C.A.3
Elhottov, D.4
Krivstuufek, V.5
Salles, J.F.6
-
66
-
-
32044472103
-
Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil
-
Viñas, M., Sabaté, J., Espuny, M.J., and Solanas, A.M. (2005) Bacterial community dynamics and polycyclic aromatic hydrocarbon degradation during bioremediation of heavily creosote-contaminated soil. Appl Environ Microbiol 71: 7008-7018.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7008-7018
-
-
Viñas, M.1
Sabaté, J.2
Espuny, M.J.3
Solanas, A.M.4
-
67
-
-
33845516878
-
Response of microbial community composition and function to soil climate change
-
Waldrop, M.P., and Firestone, M.K. (2006) Response of microbial community composition and function to soil climate change. Microb Ecol 52: 716-724.
-
(2006)
Microb Ecol
, vol.52
, pp. 716-724
-
-
Waldrop, M.P.1
Firestone, M.K.2
-
68
-
-
84865584628
-
Microbial community changes along a land-use gradient of desert soil origin
-
Wang, B.Z., Zhang, C.X., Liu, J.L., Zeng, X.W., Li, F.R., Wu, Y.C., etal. (2012) Microbial community changes along a land-use gradient of desert soil origin. Pedosphere 22: 593-603.
-
(2012)
Pedosphere
, vol.22
, pp. 593-603
-
-
Wang, B.Z.1
Zhang, C.X.2
Liu, J.L.3
Zeng, X.W.4
Li, F.R.5
Wu, Y.C.6
-
69
-
-
33947188803
-
-
WHO Wastewater Use in Agriculture. Geneva, Switzerland: World Health Organization. ISBN 92 4 154685 9
-
WHO (2006) WHO Guidelines for the Safe Use of Wastewater, Excreta and Greywater. Vol. 2. Wastewater Use in Agriculture. Geneva, Switzerland: World Health Organization. ISBN 92 4 154685 9.
-
(2006)
WHO Guidelines for the Safe Use of Wastewater, Excreta and Greywater
, vol.2
-
-
-
70
-
-
70349470913
-
Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256
-
Williams, T.J., Ertan, H., Ting, L., and Cavicchioli, R. (2009) Carbon and nitrogen substrate utilization in the marine bacterium Sphingopyxis alaskensis strain RB2256. ISME J 3: 1036-1052.
-
(2009)
ISME J
, vol.3
, pp. 1036-1052
-
-
Williams, T.J.1
Ertan, H.2
Ting, L.3
Cavicchioli, R.4
-
71
-
-
77957346491
-
Bacterial community structure in geographically distributed biological wastewater treatment reactors
-
Xia, S., Duan, L., Song, Y., Li, J., Piceno, Y.M., Andersen, G.L., etal. (2010) Bacterial community structure in geographically distributed biological wastewater treatment reactors. Environ Sci Technol 44: 7391.
-
(2010)
Environ Sci Technol
, vol.44
, pp. 7391
-
-
Xia, S.1
Duan, L.2
Song, Y.3
Li, J.4
Piceno, Y.M.5
Andersen, G.L.6
-
72
-
-
77954511408
-
Influence of long-term land application of Class B biosolids on soil bacterial diversity
-
Zerzghi, H., Brooks, J.P., Gerba, C.P., and Pepper, I.L. (2010a) Influence of long-term land application of Class B biosolids on soil bacterial diversity. J Appl Microbiol 109: 698-706.
-
(2010)
J Appl Microbiol
, vol.109
, pp. 698-706
-
-
Zerzghi, H.1
Brooks, J.P.2
Gerba, C.P.3
Pepper, I.L.4
-
73
-
-
75149138255
-
Long-term effects of land application of class B biosolids on the soil microbial populations, pathogens, and activity
-
Zerzghi, H., Gerba, C.P., Brooks, J.P., and Pepper, I.L. (2010b) Long-term effects of land application of class B biosolids on the soil microbial populations, pathogens, and activity. J Environ Qual 39: 402-408.
-
(2010)
J Environ Qual
, vol.39
, pp. 402-408
-
-
Zerzghi, H.1
Gerba, C.P.2
Brooks, J.P.3
Pepper, I.L.4
|