Spectral demultiplexing in holographic and fluorescent on-chip microscopy

Scientific Reports

Volumn 4, Issue , 2014, Pages

  Sencan, Ikbal ^a   Coskun, Ahmet F ^a   Sikora, Uzair ^a   Ozcan, Aydogan ^a,b  

^a Department of Civil and Environmental Engineering   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DIAGNOSTIC IMAGING; FLUORESCENCE MICROSCOPY; HOLOGRAPHY; HUMAN; LAB ON A CHIP; SUNLIGHT; TELEMEDICINE;

DIAGNOSTIC IMAGING; HOLOGRAPHY; HUMANS; LAB-ON-A-CHIP DEVICES; MICROSCOPY, FLUORESCENCE; SUNLIGHT; TELEMEDICINE;

EID: 84892876844     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep03760     Document Type: Article

References (52)

1. Greenbaum, A. et al. Imaging without lenses: Achievements and remaining challenges of wide-field on-chip microscopy. Nat. Methods 9, 889-895 (2012
2. Isikman, S. O. et al. Lensfree On-Chip Microscopy and Tomography for Biomedical Applications. IEEE J. Sel. Top. Quantum Electron. 18, 1059-1072 (2012
3. Gorocs, Z. & Ozcan, A. On-Chip Biomedical Imaging. Biomed. Eng. IEEE Rev. In 6, 29-46 (2013
4. Zhu, H., Isikman, S. O., Mudanyali, O., Greenbaum, A. & Ozcan, A. Optical imaging techniques for point-of-care diagnostics. Lab. Chip 13, 51-67 (2012
5. Su, T-W., Xue, L. & Ozcan, A. High-Throughput lensfree 3D tracking of human sperms reveals rare statistics of helical trajectories. Proc. Natl. Acad. Sci. 109, 16018-16022 (2012
6. Su, T-W., Erlinger, A., Tseng, D. & Ozcan, A. Compact and Light-Weight Automated Semen Analysis Platform Using Lensfree on-Chip Microscopy. Anal. Chem. 82, 8307-8312 (2010
7. Su, T-W. et al. Sperm Trajectories Form Chiral Ribbons. Sci. Rep. 3, 1664; doi:10.1038/srep01664 (2013
8. Merola, F. et al.Digital holography as amethod for 3D imaging and estimating the biovolume of motile cells. Lab. Chip 13, 4512-4516 (2013
9. Rosen, J. & Brooker, G. Non-scanning motionless fluorescence three-dimensional holographic microscopy. Nat. Photonics 2, 190-195 (2008
10. Kim, M. K. Incoherent digital holographic adaptive optics. Appl. Opt. 52, A117-A130 (2013
11. Bhaduri, B., Tangella, K.&Popescu, G. Fourier phase microscopy with white light. Biomed. Opt. Express 4, 1434-1441 (2013
12. August, Y., Vachman, C., Rivenson, Y. & Stern, A. Compressive hyperspectral imaging by random separable projections in both the spatial and the spectral domains. Appl. Opt. 52, D46-D54 (2013
13. Rivenson, Y., Stern, A. & Rosen, J. Reconstruction guarantees for compressive tomographic holography. Opt. Lett. 38, 2509-2511 (2013
14. Rivenson, Y., Katz, B., Kelner, R. & Rosen, J. Single-channel in-line multi-modal digital hologramrecorder. in Front. Opt. 2013 (Kang, I.) FW6A.4 (Optical Society of America, 2013). DOI:10.1364/FIO.2013.FW6A.4
15. Bianco, V. et al. [Looking beyond Smoke and Flames by Lensless Infrared Digital Holography] Fringe. (Springer Berlin Heidelberg, 2014
16. Brady, D. J. Optical Imaging and Spectroscopy. (John Wiley & Sons, 2009
17. Brady, D. J., Choi, K., Marks, D. L., Horisaki, R. & Lim, S. Compressive Holography. Opt. Express 17, 13040-13049 (2009
18. Choi, K. et al. Compressive holography of diffuse objects. Appl. Opt. 49, H1-H10 (2010
19. Zhu,H. et al. Cost-effective and rapid blood analysis on a cell-phone. Lab. Chip 13, 1282-1288 (2013
20. Tseng, D. et al. Lensfree microscopy on a cellphone. Lab Chip 10, 1787-1792 (2010
21. Isikman, S.O. et al. Field-portable lensfree tomographic microscope. Lab Chip 11, 2222-2230 (2011
22. Mudanyali, O. et al. Compact, light-weight and cost-effective microscope based on lensless incoherent holography for telemedicine applications. Lab Chip 10, 1417-1428 (2010
23. Wei, Q. et al. On-Chip Cytometry using Plasmonic Nanoparticle Enhanced Lensfree Holography. Sci. Rep. 3, 1699 (2013
24. Isikman, S. O., Bishara, W., Zhu, H. & Ozcan, A. Optofluidic Tomography on a Chip. Appl. Phys. Lett. 98, 161109-161109-3 (2011
25. Arpali, S. A., Arpali, C., Coskun, A. F., Chiang, H-H. & Ozcan, A. Highthroughput screening of large volumes of whole blood using structured illumination and fluorescent on-chip imaging. Lab. Chip 12, 4968-4971 (2012
26. Coskun, A. F., Sencan, I., Su, T-W. & Ozcan, A. Lensfree Fluorescent On-Chip Imaging of Transgenic Caenorhabditis elegans Over an Ultra-Wide Field-of-View. PLoS ONE 6, e15955 (2011
27. Gopinathan, U., Pedrini, G. & Osten, W. Coherence effects in digital in-line holographic microscopy. J. Opt. Soc. Am. A 25, 2459-2466 (2008
28. Xia, P. et al. Improvement of color reproduction in color digital holography by using spectral estimation technique. Appl. Opt. 50, H177-182 (2011
29. Bishara, W., Su, T-W., Coskun, A. F. & Ozcan, A. Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution. Opt. Express 18, 11181-11191 (2010
30. Hardie, R. A Fast Image Super-Resolution Algorithm Using an Adaptive Wiener Filter. IEEE Trans. Image Process. 16, 2953-2964 (2007 (Pubitemid 350201229)
31. Greenbaum, A. et al. Increased space-bandwidth product in pixel super-resolved lensfree on-chip microscopy. Sci. Rep. 3, 1717 (2013
32. Bishara, W. et al. Holographic pixel super-resolution in portable lensless on-chip microscopy using a fiber-optic array. Lab Chip 11, 1276-1279 (2011
33. Bishara, W., Isikman, S. O. & Ozcan, A. Lensfree Optofluidic Microscopy and Tomography. Ann. Biomed. Eng. 40, 251-262 (2012
34. Seo, S. et al. High-Throughput Lens-Free Blood Analysis on a Chip. Anal Chem 82, 4621-4627 (2010
35. Fienup, J. R. Phase retrieval algorithms: A comparison. Appl. Opt. 21, 2758-2769 (1982
36. Fienup, J. R. Phase retrieval for undersampled broadband images. J. Opt. Soc. Am. A 16, 1831-1837 (1999 (Pubitemid 129655461)
37. Donoho, D. L. Compressed sensing. Inf. Theory IEEE Trans. On 52, 1289-1306 (2006
38. Bioucas-Dias, J. M. & Figueiredo, M. A. T. A New TwIST: Two-Step Iterative Shrinkage/Thresholding Algorithms for Image Restoration. IEEE Trans. Image Process. 16, 2992-3004 (2007 (Pubitemid 350201232)
39. Kim, S-J., Koh, K., Lustig, M., Boyd, S. & Gorinevsky, D. An Interior-Point Method for Large-Scale l1-Regularized Least Squares. IEEE J. Sel. Top. Signal Process. 1, 606-617 (2007 (Pubitemid 351266626)
40. Coskun, A. F., Sencan, I., Su, T-W. & Ozcan, A. Lensless wide-field fluorescent imaging on a chip using compressive decoding of sparse objects. Opt. Express 18, 10510-10523 (2010
41. Repetto, L., Piano, E.& Pontiggia, C. Lensless digital holographic microscope with light-emitting diode illumination. Opt. Lett. 29, 1132-1134 (2004
42. Greenbaum, A., Akbari, N., Feizi, A., Luo, W. & Ozcan, A. Field-Portable Pixel Super-Resolution Colour Microscope. PLoS ONE 8, e76475 (2013
43. Agarwal, G. S., Gbur, G.&Wolf, E. Coherence properties of sunlight. Opt. Lett. 29, 459-461 (2004
44. Parsons, A. D. et al. Ultra-broadband support determination for extreme ultraviolet coherent diffractive imaging from a high harmonic source. J. Opt. 15, 094009 (2013
45. Abbey, B. et al. Lensless imaging using broadband X-ray sources. Nat. Photonics 5, 420-424 (2011
46. Chen, B. et al. Multiple wavelength diffractive imaging. Phys. Rev. A 79, 023809 (2009
47. Witte, S., Tenner, V. T., Noom, D. W. E. & Eikema, K. S. E. Ultra-broadband extreme-ultraviolet lensless imaging of extended complex structures. ArXiv13026064v1 Physicsoptics (2013
48. Göröcs, Z., Kiss, M., Tóth, V., Orzó, L. & Tokés, S. Multicolor digital holographic microscope (DHM) for biological purposes. in Proc SPIE 7568 Imaging Manip. Anal. Biomol. Cells Tissues VIII 7568, 75681P-75681P-10 (2010
49. Zhao, Y. et al. Hyperspectral imagery super-resolution by sparse representation and spectral regularization. EURASIP J. Adv. Signal Process. 2011, 1-10 (2011
50. Greenbaum, A., Sikora, U. & Ozcan, A. Field-portable wide-field microscopy of dense samples using multi-height pixel super-resolution based lensfree imaging. Lab. Chip 12, 1242-1245 (2012
51. Goodman, J. Introduction to Fourier Optics. (Roberts and Company Publishers, 2004
52. Carpenter, D. J. & Pask, C. The Angular Spectrum Approach to Diffraction of Partially Coherent Light. Opt. Acta Int. J. Opt. 24, 939 (1977