메뉴 건너뛰기




Volumn 8, Issue 11, 2013, Pages

Genomics assisted ancestry deconvolution in grape

Author keywords

[No Author keywords available]

Indexed keywords

ANCESTRY INFORMATIVE MARKER; ARTICLE; BACKCROSSING; CONTROLLED STUDY; CULTIVAR; FRUIT BREEDING; GENETIC ASSOCIATION; GENETIC PARAMETERS; GENOTYPE; GERMPLASM; GRAPE; INTERSPECIFIC HYBRID; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; UNITED STATES; WILD SPECIES; CLASSIFICATION; GENETICS; PLANT GENOME; VITIS;

EID: 84892742324     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0080791     Document Type: Article
Times cited : (36)

References (25)
  • 3
    • 79952753900 scopus 로고    scopus 로고
    • Genetic structure and domestication history of the grape
    • doi:10.1073/pnas.1009363108. PubMed: 21245334
    • Myles S, Boyko AR, Owens CL, Brown PJ, Grassi F et al. (2011) Genetic structure and domestication history of the grape. Proc Natl Acad Sci USA 108: 3530-3535. doi:10.1073/pnas.1009363108. PubMed: 21245334.
    • (2011) Proc Natl Acad Sci USA , vol.108 , pp. 3530-3535
    • Myles, S.1    Boyko, A.R.2    Owens, C.L.3    Brown, P.J.4    Grassi, F.5
  • 4
    • 84880513155 scopus 로고    scopus 로고
    • Improving fruit and wine: What does genomics have to offer?
    • doi:10.1016/j.tig.2013.01.006. PubMed: 23428114
    • Myles S (2013) Improving fruit and wine: what does genomics have to offer? Trends Genet 29: 190-196. doi:10.1016/j.tig.2013.01.006. PubMed: 23428114.
    • (2013) Trends Genet , vol.29 , pp. 190-196
    • Myles, S.1
  • 5
    • 79952479530 scopus 로고    scopus 로고
    • Application of genomics to grapevine improvement
    • doi: 10.1111/j.1755-0238.2009.00072.x
    • Di Gaspero G, Cattonaro F (2010) Application of genomics to grapevine improvement. Aust J Grape Wine Res 16: 122-130. doi: 10.1111/j.1755-0238.2009. 00072.x.
    • (2010) Aust J Grape Wine Res , vol.16 , pp. 122-130
    • Di Gaspero, G.1    Cattonaro, F.2
  • 6
    • 40949130394 scopus 로고    scopus 로고
    • Marker-assisted selection: An approach for precision plant breeding in the twenty-first century
    • doi:10.1098/rstb.2007.2170. PubMed: 17715053
    • Collard BCY, Mackill DJ (2008) Marker-assisted selection: an approach for precision plant breeding in the twenty-first century. Philos Trans R Soc Lond B: Biol Sci 363: 557-572. doi:10.1098/rstb.2007.2170. PubMed: 17715053.
    • (2008) Philos Trans R Soc Lond B: Biol Sci , vol.363 , pp. 557-572
    • Collard, B.C.Y.1    Mackill, D.J.2
  • 7
    • 34548292504 scopus 로고    scopus 로고
    • PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
    • doi:10.1086/519795. PubMed: 17701901
    • Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR et al. (2007) PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. Am J Hum Genet 81: 559-575. doi:10.1086/519795. PubMed: 17701901.
    • (2007) Am J Hum Genet , vol.81 , pp. 559-575
    • Purcell, S.1    Neale, B.2    Todd-Brown, K.3    Thomas, L.4    Ferreira, M.A.R.5
  • 8
    • 33846006923 scopus 로고    scopus 로고
    • Population Structure and Eigenanalysis
    • doi:10.1371/journal.pgen.0020190. PubMed: 17194218
    • Patterson N, Price AL, Reich D (2006) Population Structure and Eigenanalysis. PLOS Genet 2: e190. doi:10.1371/journal.pgen.0020190. PubMed: 17194218.
    • (2006) PLOS Genet , vol.2
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 9
  • 10
    • 73349108482 scopus 로고    scopus 로고
    • A Genealogical Interpretation of Principal Components Analysis
    • McVean G (2009) A Genealogical Interpretation of Principal Components Analysis. PLOS Genet 5: e1000686.
    • (2009) PLOS Genet , vol.5
    • McVean, G.1
  • 11
    • 34848879778 scopus 로고    scopus 로고
    • PCA-Correlated SNPs for Structure Identification in Worldwide Human Populations
    • doi:10.1371/journal.pgen.0030160. PubMed: 17892327
    • Paschou P, Ziv E, Burchard EG, Choudhry S, Rodriguez-Cintron W et al. (2007) PCA-Correlated SNPs for Structure Identification in Worldwide Human Populations. PLOS Genet 3: e160. doi:10.1371/journal.pgen.0030160. PubMed: 17892327.
    • (2007) PLOS Genet , vol.3
    • Paschou, P.1    Ziv, E.2    Burchard, E.G.3    Choudhry, S.4    Rodriguez-Cintron, W.5
  • 12
    • 76249102674 scopus 로고    scopus 로고
    • Genome-wide patterns of population structure and admixture in West Africans and African Americans
    • PubMed: 20080753
    • Bryc K, Auton A, Nelson MR, Oksenberg JR, Hauser SL et al. (2009) Genome-wide patterns of population structure and admixture in West Africans and African Americans. Proc Natl Acad Sci USA 107: 786-791. PubMed: 20080753.
    • (2009) Proc Natl Acad Sci USA , vol.107 , pp. 786-791
    • Bryc, K.1    Auton, A.2    Nelson, M.R.3    Oksenberg, J.R.4    Hauser, S.L.5
  • 13
    • 0034118493 scopus 로고    scopus 로고
    • Inference of Population Structure Using Multilocus Genotype Data
    • PubMed: 10835412
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of Population Structure Using Multilocus Genotype Data. Genetics 155: 945-959. PubMed: 10835412.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 14
    • 84863628084 scopus 로고    scopus 로고
    • Principal Components Analysis of Population Admixture
    • doi:10.1371/journal.pone.0040115. PubMed: 22808102
    • Ma J, Amos CI (2012) Principal Components Analysis of Population Admixture. PLOS ONE 7: e40115. doi:10.1371/journal.pone.0040115. PubMed: 22808102.
    • (2012) PLOS ONE , vol.7
    • Ma, J.1    Amos, C.I.2
  • 15
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • doi:10.2307/2408641
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370. doi:10.2307/2408641.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 16
    • 5344244656 scopus 로고    scopus 로고
    • R Development Core Team Retrieved onpublished at whilst December year 1111 from Vienna, Austria: Accessed. Accessed October 21
    • R Development Core Team (2008) R: A language and environment for statistical computing. Retrieved onpublished at whilst December year 1111 from http://www.R-project.org. Vienna, Austria: Accessed. p. 2013. Accessed October 21.
    • (2008) R: A Language and Environment for Statistical Computing , pp. 2013
  • 17
    • 65449132092 scopus 로고    scopus 로고
    • Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
    • Bovine HapMap Consortium, doi:10.1126/science.1167936. PubMed: 19390050
    • Bovine HapMap Consortium, Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, et al. (2009) Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds. Science 324: 528-532. doi:10.1126/science. 1167936. PubMed: 19390050.
    • (2009) Science , vol.324 , pp. 528-532
    • Gibbs, R.A.1    Taylor, J.F.2    Van Tassell, C.P.3    Barendse, W.4    Eversole, K.A.5
  • 18
    • 69549122686 scopus 로고    scopus 로고
    • Complex population structure in African village dogs and its implications for inferring dog domestication history
    • doi:10.1073/pnas.0902129106. PubMed: 19666600
    • Boyko AR, Boyko RH, Boyko CM, Parker HG, Castelhano M et al. (2009) Complex population structure in African village dogs and its implications for inferring dog domestication history. Proc Natl Acad Sci USA 106: 13903-13908. doi:10.1073/pnas.0902129106. PubMed: 19666600.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 13903-13908
    • Boyko, A.R.1    Boyko, R.H.2    Boyko, C.M.3    Parker, H.G.4    Castelhano, M.5
  • 19
    • 55549115654 scopus 로고    scopus 로고
    • Genes mirror geography within Europe
    • doi: 10.1038/nature07331. PubMed: 18758442
    • Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR et al. (2008) Genes mirror geography within Europe. Nature 456: 98-101. doi: 10.1038/nature07331. PubMed: 18758442.
    • (2008) Nature , vol.456 , pp. 98-101
    • Novembre, J.1    Johnson, T.2    Bryc, K.3    Kutalik, Z.4    Boyko, A.R.5
  • 20
    • 77952534535 scopus 로고    scopus 로고
    • Rapid Genomic Characterization of the Genus Vitis
    • doi:10.1371/journal.pone.0008219. PubMed: 20084295
    • Myles S, Chia J-M, Hurwitz B, Simon C, Zhong GY et al. (2010) Rapid Genomic Characterization of the Genus Vitis. PLOS ONE 5: e8219. doi:10.1371/journal.pone.0008219. PubMed: 20084295.
    • (2010) PLOS ONE , vol.5
    • Myles, S.1    Chia, J.-M.2    Hurwitz, B.3    Simon, C.4    Zhong, G.Y.5
  • 22
    • 79955783956 scopus 로고    scopus 로고
    • A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
    • doi:10.1371/journal.pone.0019379. PubMed: 21573248
    • Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K et al. (2011) A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species. PLOS ONE 6: e19379. doi:10.1371/journal.pone.0019379. PubMed: 21573248.
    • (2011) PLOS ONE , vol.6
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5
  • 23
    • 83655181420 scopus 로고    scopus 로고
    • Comparison of measures of marker informativeness for ancestry and admixture mapping
    • doi:10.1186/1471-2164-12-622. PubMed: 22185208
    • Ding L, Wiener H, Abebe T, Altaye M, Go RC et al. (2011) Comparison of measures of marker informativeness for ancestry and admixture mapping. BMC Genomics 12: 622. doi:10.1186/1471-2164-12-622. PubMed: 22185208.
    • (2011) BMC Genomics , vol.12 , pp. 622
    • Ding, L.1    Wiener, H.2    Abebe, T.3    Altaye, M.4    Go, R.C.5
  • 24
    • 34848886909 scopus 로고    scopus 로고
    • The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    • the French-Italian Public Consortium for Grapevine Genome Characterization doi:10.1038/nature06148. PubMed: 17721507
    • the French-Italian Public Consortium for Grapevine Genome Characterization (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467. doi:10.1038/nature06148. PubMed: 17721507.
    • (2007) Nature , vol.449 , pp. 463-467
  • 25
    • 48249148358 scopus 로고    scopus 로고
    • Tracing Sub-Structure in the European American Population with PCA-Informative Markers
    • PubMed: 18797516
    • Paschou P, Drineas P, Lewis J, Nievergelt CM, Nickerson DA et al. (2008) Tracing Sub-Structure in the European American Population with PCA-Informative Markers. PLOS Genet 4: e1000114. PubMed: 18797516.
    • (2008) PLOS Genet , vol.4
    • Paschou, P.1    Drineas, P.2    Lewis, J.3    Nievergelt, C.M.4    Nickerson, D.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.