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Volumn 30, Issue 2, 2014, Pages 284-286

MEDIPS: Genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments

Author keywords

[No Author keywords available]

Indexed keywords

DNA BINDING PROTEIN; MBD1 PROTEIN, MOUSE;

EID: 84892740765     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt650     Document Type: Article
Times cited : (268)

References (9)
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    • Down, T.A. et al. (2008) A Bayesian deconvolution strategy for immunoprecipita-tion-based DNA methylome analysis. Nat. Biotechnol., 26, 779-785.
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    • DNA-methylome analysis of mouse intestinal adenoma identifies a tumour-specific signature that is partly conserved in human colon cancer
    • Grimm, C. et al. (2013) DNA-methylome analysis of mouse intestinal adenoma identifies a tumour-specific signature that is partly conserved in human colon cancer. PLoS Genet., 9, e1003250.
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    • Grimm, C.1
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    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
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    • Langmead, B.1
  • 5
    • 79956308473 scopus 로고    scopus 로고
    • Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
    • Pastor, W.A. et al. (2011) Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature, 473, 394-397.
    • (2011) Nature , vol.473 , pp. 394-397
    • Pastor, W.A.1
  • 6
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    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010a) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
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    • Robinson, M.D.1
  • 7
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    • Evaluation of affinity-based genome-wide DNA methylation data: Effects of CpG density, amplification bias, and copy number variation
    • Robinson, M.D. et al. (2010b) Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation. Genome Res., 20, 1719-1729.
    • (2010) Genome Res. , vol.20 , pp. 1719-1729
    • Robinson, M.D.1
  • 8
    • 77449127799 scopus 로고    scopus 로고
    • MBD-isolated genome sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome
    • Serre, D. et al. (2010) MBD-isolated genome sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Res., 38, 391-399.
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    • Serre, D.1
  • 9
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    • Weber, M. et al. (2005) Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet., 37, 853-862.
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    • Weber, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.