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Volumn 6, Issue 1, 2014, Pages 45-56

Myxobacterial community is a predominant and highly diverse bacterial group in soil niches

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIUM; BIODIVERSITY; CHINA; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; MYXOCOCCALES; PHYLOGENY;

EID: 84892660332     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/1758-2229.12107     Document Type: Article
Times cited : (61)

References (42)
  • 1
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann, R.I., Binder, B.J., Olson, R.J., Chisholm, S.W., Devereux, R., and Stahl, D.A. (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 2
    • 68149094083 scopus 로고    scopus 로고
    • Deciphering the hunting strategy of a bacterial wolfpack
    • Berleman, J.E., and Kirby, J.R. (2009) Deciphering the hunting strategy of a bacterial wolfpack. FEMS Microbiol Rev 33: 942-957.
    • (2009) FEMS Microbiol Rev , vol.33 , pp. 942-957
    • Berleman, J.E.1    Kirby, J.R.2
  • 3
    • 0036126789 scopus 로고    scopus 로고
    • The interaction between predation and competition: a review and synthesis
    • Chase, J.M., Abrams, P.A., Grover, J.P., Diehl, S., Chesson, P., Holt, R.D., etal. (2002) The interaction between predation and competition: a review and synthesis. Ecol Lett 5: 302-315.
    • (2002) Ecol Lett , vol.5 , pp. 302-315
    • Chase, J.M.1    Abrams, P.A.2    Grover, J.P.3    Diehl, S.4    Chesson, P.5    Holt, R.D.6
  • 4
    • 0034503114 scopus 로고    scopus 로고
    • Mechanism of maintenance of species diversity
    • Chesson, P. (2000) Mechanism of maintenance of species diversity. Annu Rev Ecol Syst 31: 343-366.
    • (2000) Annu Rev Ecol Syst , vol.31 , pp. 343-366
    • Chesson, P.1
  • 5
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
    • Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
    • (2009) Nucleic Acids Res , vol.37
    • Cole, J.R.1    Wang, Q.2    Cardenas, E.3    Fish, J.4    Chai, B.5    Farris, R.J.6
  • 6
    • 0035313866 scopus 로고    scopus 로고
    • The evolution of social behavior in microorganisms
    • Crespi, B.J. (2001) The evolution of social behavior in microorganisms. Trends Ecol Evol 16: 178-183.
    • (2001) Trends Ecol Evol , vol.16 , pp. 178-183
    • Crespi, B.J.1
  • 7
    • 0033818173 scopus 로고    scopus 로고
    • Biology and global distribution of myxobacteria in soils
    • Dawid, W. (2000) Biology and global distribution of myxobacteria in soils. FEMS Microbiol Rev 24: 403-427.
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 403-427
    • Dawid, W.1
  • 8
    • 0029980554 scopus 로고    scopus 로고
    • Recent advances in the social and developmental biology of the myxobacteria
    • Dworkin, M. (1996) Recent advances in the social and developmental biology of the myxobacteria. Microbiol Rev 60: 70-102.
    • (1996) Microbiol Rev , vol.60 , pp. 70-102
    • Dworkin, M.1
  • 9
    • 77957057215 scopus 로고    scopus 로고
    • Uncultivated microorganisms
    • Steinbüchel, A. (ed.). New York, USA: Springer-Verlag
    • Epstein, S.S. (2009) Uncultivated microorganisms. In Microbiology Monographs. Steinbüchel, A. (ed.). New York, USA: Springer-Verlag, pp. 121-131.
    • (2009) Microbiology Monographs , pp. 121-131
    • Epstein, S.S.1
  • 10
    • 38449112550 scopus 로고    scopus 로고
    • Environmental controls on the landscape-scale biogeography of stream bacterial communities
    • Fierer, N., Morse, J.L., Berthrong, S.T., Bernhardt, E.S., and Jackson, R.B. (2007) Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology 88: 2162-2173.
    • (2007) Ecology , vol.88 , pp. 2162-2173
    • Fierer, N.1    Morse, J.L.2    Berthrong, S.T.3    Bernhardt, E.S.4    Jackson, R.B.5
  • 11
    • 23944525404 scopus 로고    scopus 로고
    • Computational improvements reveal great bacterial diversity and high metal toxicity in soil
    • Gans, J., Wolinsky, M., and Dunbar, J. (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309: 1387-1390.
    • (2005) Science , vol.309 , pp. 1387-1390
    • Gans, J.1    Wolinsky, M.2    Dunbar, J.3
  • 12
    • 34447250033 scopus 로고    scopus 로고
    • Fruiting and non-fruiting myxobacteria: a phylogenetic perspective of cultured and uncultured members of this group
    • Jiang, D.M., Wu, Z.H., Zhao, J.Y., and Li, Y.Z. (2007) Fruiting and non-fruiting myxobacteria: a phylogenetic perspective of cultured and uncultured members of this group. Mol Phylogenet Evol 44: 545-552.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 545-552
    • Jiang, D.M.1    Wu, Z.H.2    Zhao, J.Y.3    Li, Y.Z.4
  • 13
    • 1142267977 scopus 로고    scopus 로고
    • Coupling cell movement to multicellular development in myxobacteria
    • Kaiser, D. (2003) Coupling cell movement to multicellular development in myxobacteria. Nat Rev Microbiol 1: 45-54.
    • (2003) Nat Rev Microbiol , vol.1 , pp. 45-54
    • Kaiser, D.1
  • 14
    • 79961097290 scopus 로고    scopus 로고
    • Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants
    • Kolton, M., Meller Harel, Y., Pasternak, Z., Graber, E.R., Elad, Y., and Cytryn, E. (2011) Impact of biochar application to soil on the root-associated bacterial community structure of fully developed greenhouse pepper plants. Appl Environ Microbiol 77: 4924-4930.
    • (2011) Appl Environ Microbiol , vol.77 , pp. 4924-4930
    • Kolton, M.1    Meller Harel, Y.2    Pasternak, Z.3    Graber, E.R.4    Elad, Y.5    Cytryn, E.6
  • 15
    • 0141438984 scopus 로고    scopus 로고
    • Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes
    • LaMontagne, M.G., Schimel, J.P., and Holden, P.A. (2003) Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S rRNA genes. Microb Ecol 46: 216-227.
    • (2003) Microb Ecol , vol.46 , pp. 216-227
    • LaMontagne, M.G.1    Schimel, J.P.2    Holden, P.A.3
  • 16
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt, E., and Goodfellow, M. (eds). New York, USA: John Wiley and Sons
    • Lane, D.J. (1991) 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematic. Stackebrandt, E., and Goodfellow, M. (eds). New York, USA: John Wiley and Sons, pp. 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematic , pp. 115-175
    • Lane, D.J.1
  • 17
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber, C.L., Hamady, M., Knight, R., and Fierer, N. (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 18
    • 33747348104 scopus 로고    scopus 로고
    • Identification of bacterial micropredators distinctively active in a soil microbial food web
    • Lueders, T., Kindler, R., Miltner, A., Friedrich, M.W., and Kaestner, M. (2006) Identification of bacterial micropredators distinctively active in a soil microbial food web. Appl Environ Microbiol 72: 5342-5348.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 5342-5348
    • Lueders, T.1    Kindler, R.2    Miltner, A.3    Friedrich, M.W.4    Kaestner, M.5
  • 19
    • 53549118607 scopus 로고    scopus 로고
    • The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
    • Meyer, F., Paarmann, D., D'Souza, M., Olson, R., Glass, E.M., Kubal, M., etal. (2008) The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9: 386.
    • (2008) BMC Bioinformatics , vol.9 , pp. 386
    • Meyer, F.1    Paarmann, D.2    D'Souza, M.3    Olson, R.4    Glass, E.M.5    Kubal, M.6
  • 21
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E.C., and Uitterlinden, A.G. (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 22
    • 79951926011 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils
    • Nacke, H., Thurmer, A., Wollherr, A., Will, C., Hodac, L., Herold, N., etal. (2011) Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils. PLoS ONE 6: e17000.
    • (2011) PLoS ONE , vol.6
    • Nacke, H.1    Thurmer, A.2    Wollherr, A.3    Will, C.4    Hodac, L.5    Herold, N.6
  • 23
  • 24
    • 0024077048 scopus 로고
    • Reexamination of the role of autolysis in the development of Myxococcus xanthus
    • O'Connor, K.A., and Zusman, D.R. (1988) Reexamination of the role of autolysis in the development of Myxococcus xanthus. J Bacteriol 170: 4103-4112.
    • (1988) J Bacteriol , vol.170 , pp. 4103-4112
    • O'Connor, K.A.1    Zusman, D.R.2
  • 25
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 26
    • 0033068941 scopus 로고    scopus 로고
    • The ecology of the myxobacteria
    • Reichenbach, H. (1999) The ecology of the myxobacteria. Environ Microbiol 1: 15-21.
    • (1999) Environ Microbiol , vol.1 , pp. 15-21
    • Reichenbach, H.1
  • 27
    • 33750000141 scopus 로고    scopus 로고
    • The Myxococcales
    • Garrity, G.M. (ed.). New York, USA: Springer-Verlag
    • Reichenbach, H. (2004) The Myxococcales. In Bergey's Manual of Systematic Bacteriology. Garrity, G.M. (ed.). New York, USA: Springer-Verlag, pp. 1059-1143.
    • (2004) Bergey's Manual of Systematic Bacteriology , pp. 1059-1143
    • Reichenbach, H.1
  • 29
    • 0017577524 scopus 로고
    • Cell density-dependent growth of Myxococcus xanthus on casein
    • Rosenberg, E., Keller, K.H., and Dworkin, M. (1977) Cell density-dependent growth of Myxococcus xanthus on casein. J Bacteriol 129: 770-777.
    • (1977) J Bacteriol , vol.129 , pp. 770-777
    • Rosenberg, E.1    Keller, K.H.2    Dworkin, M.3
  • 30
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P.D., and Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71: 1501-1506.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 31
    • 33746639717 scopus 로고    scopus 로고
    • Toward a census of bacteria in soil
    • and () . : .
    • Schloss, P.D., and Handelsman, J. (2006) Toward a census of bacteria in soil. PLoS Comput Biol 2: e92.
    • (2006) PLoS Comput Biol , vol.2
    • Schloss, P.D.1    Handelsman, J.2
  • 32
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P.D., Westcott, S.L., Ryabin, T., Hall, J.R., Hartmann, M., Hollister, E.B., etal. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5    Hollister, E.B.6
  • 33
    • 33749412204 scopus 로고    scopus 로고
    • The myxobacteria
    • In, 3rd edn, Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackebrandt, E. (eds). Heidelberg, Germany: Springer
    • Shimkets, L., Dworkin, M., and Reichenbach, H. (2006) The myxobacteria. In The Prokaryotes, 3rd edn, Vol. 7. Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, K.H., and Stackebrandt, E. (eds). Heidelberg, Germany: Springer, pp. 31-115.
    • (2006) The Prokaryotes , vol.7 , pp. 31-115
    • Shimkets, L.1    Dworkin, M.2    Reichenbach, H.3
  • 34
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki, M.T., and Giovannoni, S.J. (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625-630.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 35
    • 0033166540 scopus 로고    scopus 로고
    • Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis
    • Turner, S., Pryer, K.M., Miao, V.P., and Palmer, J.D. (1999) Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. J Eukaryot Microbiol 46: 327-338.
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 327-338
    • Turner, S.1    Pryer, K.M.2    Miao, V.P.3    Palmer, J.D.4
  • 36
    • 77954695132 scopus 로고    scopus 로고
    • Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil
    • Uroz, S., Buée, M., Murat, C., Frey-Klett, P., and Martin, F. (2010) Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil. Environ Microbiol Rep 2: 281-288.
    • (2010) Environ Microbiol Rep , vol.2 , pp. 281-288
    • Uroz, S.1    Buée, M.2    Murat, C.3    Frey-Klett, P.4    Martin, F.5
  • 38
    • 77958542467 scopus 로고    scopus 로고
    • Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes
    • Will, C., Thurmer, A., Wollherr, A., Nacke, H., Herold, N., Schrumpf, M., etal. (2010) Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes. Appl Environ Microbiol 76: 6751-6759.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 6751-6759
    • Will, C.1    Thurmer, A.2    Wollherr, A.3    Nacke, H.4    Herold, N.5    Schrumpf, M.6
  • 39
    • 0017595257 scopus 로고
    • Developmentally induced autolysis during fruiting body formation by Myxococcus xanthus
    • Wireman, J.W., and Dworkin, M. (1977) Developmentally induced autolysis during fruiting body formation by Myxococcus xanthus. J Bacteriol 129: 798-802.
    • (1977) J Bacteriol , vol.129 , pp. 798-802
    • Wireman, J.W.1    Dworkin, M.2
  • 40
    • 25144521051 scopus 로고    scopus 로고
    • Exploring the diversity of myxobacteria in a soil niche by myxobacteria-specific primers and probes
    • Wu, Z.H., Jiang, D.M., Li, P., and Li, Y.Z. (2005) Exploring the diversity of myxobacteria in a soil niche by myxobacteria-specific primers and probes. Environ Microbiol 7: 1602-1610.
    • (2005) Environ Microbiol , vol.7 , pp. 1602-1610
    • Wu, Z.H.1    Jiang, D.M.2    Li, P.3    Li, Y.Z.4
  • 41
    • 20044384737 scopus 로고    scopus 로고
    • Characterization of developmental autolysis in myxobacterial fruiting body morphogenesis with profiling of amino acids using capillary electrophoresis method
    • Zhang, H., Dong, H., Zhao, J., Hu, W., and Li, Y.Z. (2005) Characterization of developmental autolysis in myxobacterial fruiting body morphogenesis with profiling of amino acids using capillary electrophoresis method. Amino Acids 28: 319-325.
    • (2005) Amino Acids , vol.28 , pp. 319-325
    • Zhang, H.1    Dong, H.2    Zhao, J.3    Hu, W.4    Li, Y.Z.5


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