Genome-wide identification and analysis of candidate genes for disease resistance in tomato

Molecular Breeding

Volumn 33, Issue 1, 2014, Pages 227-233

  Andolfo, G ^a   Sanseverino, W ^a   Aversano, R ^a   Frusciante, L ^a   Ercolano, M R ^a  

^a UNIVERSITY OF NAPLES FEDERICO II   (Italy)

Author keywords

Genomic approach; Physical map; Predicted proteins; R loci; Solanum lycopersicum

Indexed keywords

FRUITS; GENES; PATHOGENS; PLANTS (BOTANY);

CANDIDATE GENES; DISEASE RESISTANCE; GENOMIC APPROACH; GENOMICS; MODELLING SYSTEMS; PATHOGEN RECOGNITION; PHYSICAL MAP; PREDICTED PROTEIN; R LOCUS; SOLANUM LYCOPERSICUM;

GENOME;

LYCOPERSICON ESCULENTUM;

EID: 84892481375     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-013-9928-7     Document Type: Article

References (24)

1. Andolfo G, Sanseverino W, Rombauts S, van der Peer J, Bradeen JM, Carputo D, Frusciante L, Ercolano MR (2013) Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics. New Phytol 197(1): 223-237.
2. Caicedo AL, Schaal BA (2004) Heterogeneous evolutionary processes affect R-gene diversity in natural populations of Solanum pimpinellifolium. Proc Natl Acad Sci USA 101: 17444-17449.
3. Doganlar S, Frary A, Daunay MC, Lester RN, Tanksley SD (2002) A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the Solanaceae. Genetics 161: 1697-1711.
4. Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
5. Ercolano MR, Sanseverino W, Carli P, Ferriello F, Frusciante L (2012) Genetic and genomic approaches for R-gene mediated disease resistance in tomato: retrospects and prospects. Plant Cell Rep 31: 973-985.
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
7. Foolad MR (2007) Genome mapping and molecular breeding of tomato. Int J Plant Genomics 64358: 52.
8. Hanson PM, Bernacchi D, Green S, Tanksley SD, Muniyappa V, Padmaja AS, Chen H, Kuo G, Fang D, Chen J (2000) Mapping a wild tomato introgression associated with Tomato yellow leaf curl virus resistance in a cultivated tomato line. J Am Soc Hort Sci 125: 15-20.
9. Kaloshian I, Yaghoobi J, Liharska T, Hontelez J, Hanson D, Hogan P, Jesse T, Wijbrandi J, Simons G, Vos P, Zabel P, Williamson VM (1998) Genetic and physical localization of the root-knot nematode resistance locus Mi in tomato. Mol Gen Genet 257: 376-385.
10. Martin GB, Williams JG, Tanksley SD (1991) Rapid identification of markers linked to a Pseudomonas resistance gene in tomato by using random primers and near-isogenic lines. Proc Natl Acad Sci USA 88: 2336-2340.
11. Mazourek M, Cirulli ET, Collier SM, Landry LG, Kang BC, Quirin EA, Bradeen JM, Moffett P, Jahn MM (2009) The fractionated orthology of Bs2 and Rx/Gpa2 supports shared synteny of disease resistance in the Solanaceae. Genetics 182: 1351-1364.
12. McDowell JM, Simon SA (2008) Molecular diversity at the plant-pathogen interface. Dev Comp Immunol 32: 736-744.
13. McHale L, Tan X, Koehl P, Michelmore RW (2006) Plant NBS-LRR proteins: adaptable guards. Genome Biol 7: 212.
14. Miyakawa T, Miyazono K, Sawano Y, Hatano K, Tanokura M (2009) Crystal structure of ginkbilobin-2 with homology to the extracellular domain of plant cysteine-rich receptor-like kinases. Proteins 77: 247-251.
15. Pan Q, Liu YS, Budai-Hadrian O, Sela M, Carmel-Goren L, Zamir D, Fluhr R (2000) Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and arabidopsis. Genetics 155: 309-322.
16. Pedley KF, Martin GB (2003) Molecular basis of Pto-mediated resistance to bacterial speck disease in tomato. Annu Rev Phytol Pathol 41: 215-243.
17. Riely B, Martin G (2001) Ancient origin of pathogen recognition specificity conferred by the tomato disease resistance gene Pto. Proc Natl Acad Sci USA 98: 2059-2064.
18. Sawano Y, Miyakawa T, Yamazaki H, Tanokura M, Hatano K (2007) Purification, characterization, and molecular gene cloning of an antifungal protein from Ginkgo biloba seeds. Biol Chem 388: 273-280.
19. Stevens MR, Lamb EM, Rhoads DD (1995) Mapping the Sw-5 locus for tomato spotted wilt virus resistance in tomatoes using RAPD and RFLP analyses. Theor Appl Genet 90: 451-456.
20. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
21. Tang X, Xie M, Kim YJ, Zhou J, Klessig DF, Martin GB (1999) Overexpression of Pto activates defense responses and confers broad resistance. Plant Cell 11: 15-29.
22. Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641.
23. Whelan S, Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-699.
24. Xiao S, Ellwood S, Calis O, Patrick E, Li T, Coleman M, Turner JG (2001) Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8. Science 291: 118-120.