A challenging interpretation of a hexagonally layered protein structure

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 1, 2014, Pages 203-208

  Thompson, Michael C ^a   Yeates, Todd O ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

carboxysome; CcmK1 shell protein; hexameric shell proteins

Indexed keywords

BACTERIAL PROTEIN;

ARTICLE; CARBOXYSOME; CCMK1 SHELL PROTEIN; CHEMICAL STRUCTURE; CHEMISTRY; CYTOLOGY; GENETICS; HEXAMERIC SHELL PROTEINS; POINT MUTATION; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION; SYNECHOCYSTIS; X RAY CRYSTALLOGRAPHY;

CARBOXYSOME; CCMK1 SHELL PROTEIN; HEXAMERIC SHELL PROTEINS;

BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; POINT MUTATION; PROTEIN CONFORMATION; PROTEIN MULTIMERIZATION; SYNECHOCYSTIS;

EID: 84892402637     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S139900471302422X     Document Type: Article

References (37)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Afonine, P. V., Grosse-Kunstleve, R. W., Echols, N., Headd, J. J., Moriarty, N. W., Mustyakimov, M., Terwilliger, T. C., Urzhumtsev, A., Zwart, P. H. & Adams, P. D. (2012). Acta Cryst. D68, 352-367.
3. Badger, M. R. & Price, G. D. (2003). J. Exp. Bot. 54, 609-622.
4. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
5. Cheng, S., Liu, Y., Crowley, C. S., Yeates, T. O. & Bobik, T. A. (2008). Bioessays, 30, 1084-1095.
6. Crowley, C. S., Cascio, D., Sawaya, M. R., Kopstein, J. S., Bobik, T. A. & Yeates, T. O. (2010). J. Biol. Chem. 285, 37838-37846.
7. Diederichs, K. & Karplus, P. A. (1997). Nature Struct. Mol. Biol. 4, 269-275.
8. Dryden, K. A., Crowley, C. S., Tanaka, S., Yeates, T. O. & Yeager, M. (2009). Protein Sci. 18, 2629-2635.
9. Emsley, P., Lohkamp, B., Scott, W. G. & Cowtan, K. (2010). Acta Cryst. D66, 486-501.
10. Iwasaki, H. (1972). Acta Cryst. A28, 253-260.
11. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
12. Kerfeld, C. A., Heinhorst, S. & Cannon, G. C. (2010). Annu. Rev. Microbiol. 64, 391-408.
13. Kerfeld, C. A., Sawaya, M. R., Tanaka, S., Nguyen, C. V., Phillips, M., Beeby, M. & Yeates, T. O. (2005). Science, 309, 936-938.
14. Lebedev, A. A. & Isupov, M. N. (2012). CCP4 Newsl. Protein Crystallogr. 48, 53-61.
15. Lovell, S. C., Davis, I.W., Arendall,W. B., de Bakker, P. I.,Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003). Proteins, 50, 437-450.
16. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
17. Padilla, J. E. & Yeates, T. O. (2003). Acta Cryst. D59, 1124-1130.
18. Painter, J. & Merritt, E. A. (2006a). Acta Cryst. D62, 439-450.
19. Painter, J. & Merritt, E. A. (2006b). J. Appl. Cryst. 39, 109-111.
20. Patterson, A. (1934). Phys. Rev. 46, 372-376.
21. Poon, B. K., Grosse-Kunstleve, R.W., Zwart, P. H. & Sauter, N. K. (2010). Acta Cryst. D66, 503-513.
22. Potterton, E., Briggs, P., Turkenburg,M. & Dodson, E. (2003). Acta Cryst. D59, 1131-1137.
23. Punta, M. et al. (2011 Nuc Acids Res. 40, D290-D301.
24. Robbins, A. H., Domsic, J. F., Agbandje-McKenna, M. & McKenna, R. (2010a). Acta Cryst. D66, 950-952.
25. Robbins, A. H., Domsic, J. F., Agbandje-McKenna, M. & McKenna, R. (2010b). Acta Cryst. D66, 628-634.
26. Sadanaga, R. & Ohsumi, K. (1979). Acta Cryst. A35, 115-122.
27. Samborska, B. & Kimber, M. S. (2012). Structure, 20, 1353-1362.
28. Tanaka, S., Kerfeld, C. A., Sawaya, M. R., Cai, F., Heinhorst, S., Cannon, G. C. & Yeates, T. O. (2008). Science, 319, 1083-1086.
29. Tanaka, S., Sawaya, M. R., Phillips, M. & Yeates, T. O. (2009). Protein Sci. 18, 108-120.
30. Tsai, Y., Sawaya, M. R., Cannon, G. C., Cai, F., Williams, E. B., Heinhorst, S., Kerfeld, C. A. & Yeates, T. O. (2007). PloS Biol. 5, e144.
31. Tsai, Y., Sawaya, M. R. & Yeates, T. O. (2009). Acta Cryst. D65, 980-988.
32. Vagin, A. & Teplyakov, A. (2010). Acta Cryst. D66, 22-25.
33. Word, J. M., Lovell, S. C., Richardson, J. S. & Richardson, D. C. (1999). J. Mol. Biol. 285, 1735-1747.
34. Yeates, T. O., Crowley, C. S. & Tanaka, S. (2010). Annu. Rev. Biophys. 39, 185-205.
35. Yeates, T. O., Kerfeld, C. A., Heinhorst, S., Cannon, G. C. & Shively, J. M. (2008). Nature Rev. Microbiol. 6, 681-691.
36. Yeates, T. O., Thompson, M. C. & Bobik, T. A. (2011). Curr. Opin. Struct. Biol. 21, 223-231.
37. Zwart, P. H., Grosse-Kunstleve, R. W., Lebedev, A. A., Murshudov, G. N. & Adams, P. D. (2008). Acta Cryst. D64, 99-107.