High-resolution photoacoustic tomography of resting-state functional connectivity in the mouse brain

Proceedings of the National Academy of Sciences of the United States of America

Volumn 111, Issue 1, 2013, Pages 21-26

  Nasiriavanaki, Mohammadreza ^a   Xia, Jun ^a   Wan, Hanlin ^a   Bauer, Adam Quentin ^b   Culver, Joseph P ^b   Wang, Lihong V ^a  

^a Optical Imaging Laboratory   (United States)

^b WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

FcPAT; Hyperoxia; Hypoxia; Mouse brain functional imaging; RSFC

Indexed keywords

ANIMAL TISSUE; ARTICLE; BRAIN; LIMBIC CORTEX; MOTOR CORTEX; MOUSE; NONHUMAN; OLFACTORY BULB; PARIETAL CORTEX; PHOTOACOUSTIC TOMOGRAPHY; PRIORITY JOURNAL; RESTING STATE NETWORK; RETROSPLENIAL CORTEX; SOMATOSENSORY CORTEX; TEMPORAL LOBE; VISUAL CORTEX;

FCPAT; HYPEROXIA; HYPOXIA; MOUSE BRAIN FUNCTIONAL IMAGING; RSFC;

ALGORITHMS; ANIMALS; ANOXIA; BRAIN; BRAIN MAPPING; DISEASE MODELS, ANIMAL; ELECTRODES; EQUIPMENT DESIGN; HEMODYNAMICS; HEMOGLOBINS; HYPEROXIA; IMAGE PROCESSING, COMPUTER-ASSISTED; LASERS; MALE; MICE; NEURAL PATHWAYS; NORMAL DISTRIBUTION; PHOTOACOUSTIC TECHNIQUES;

EID: 84891915579     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1311868111     Document Type: Article

References (60)

1. Biswal B, Yetkin FZ, Haughton VM, Hyde JS (1995) Functional connectivity in the motor cortex of resting human brain using echo-planar MRI. Magn Reson Med 34(4): 537-541.
2. Fox MD, Raichle ME (2007) Spontaneous fluctuations in brain activity observed with functional magnetic resonance imaging. Nat Rev Neurosci 8(9): 700-711.
3. White BR, et al. (2011) Imaging of functional connectivity in the mouse brain. PLoS ONE 6(1):e16322.
4. Kalthoff D, Seehafer JU, Po C, Wiedermann D, Hoehn M (2011) Functional connectivity in the rat at 11.7 T: Impact of physiological noise in resting state fMRI. Neuroimage 54(4): 2828-2839.
5. Paxinos G, Franklin K (2003) The Mouse Brain in Stereotaxic Coordinates: Compact (Academic, San Diego), 2nd Ed.
6. Buckner RL, et al. (2009) Cortical hubs revealed by intrinsic functional connectivity: Mapping, assessment of stability, and relation to Alzheimer's disease. J Neurosci 29(6): 1860-1873.
7. Seeley WW, Crawford RK, Zhou J, Miller BL, Greicius MD (2009) Neurodegenerative diseases target large-scale human brain networks. Neuron 62(1): 42-52.
8. Varoquaux G, Baronnet F, Kleinschmidt A, Fillard P, Thirion B (2010) Detection of brain functional-connectivity difference in post-stroke patients using group-level covariance modeling. Med Image Comput Comput Assist Interv 13(Pt 1): 200-208.
9. Lawrie SM, et al. (2002) Reduced frontotemporal functional connectivity in schizophrenia associated with auditory hallucinations. Biol Psychiatry 51(12): 1008-1011.
10. Lowe MJ, et al. (2002) Multiple sclerosis: Low-frequency temporal blood oxygen leveldependent fluctuations indicate reduced functional connectivity initial results. Radiology 224(1): 184-192.
11. Koshino H, et al. (2005) Functional connectivity in an fMRI working memory task in high-functioning autism. Neuroimage 24(3): 810-821.
12. Waites AB, Briellmann RS, Saling MM, Abbott DF, Jackson GD (2006) Functional connectivity networks are disrupted in left temporal lobe epilepsy. Ann Neurol 59(2): 335-343.
13. Jonckers E, Van Audekerke J, De Visscher G, Van der Linden A, Verhoye M (2011) Functional connectivity fMRI of the rodent brain: Comparison of functional connectivity networks in rat and mouse. PLoS ONE 6(4):e18876.
14. Vincent JL, et al. (2007) Intrinsic functional architecture in the anaesthetized monkey brain. Nature 447(7140): 83-86.
15. Fransson P, et al. (2007) Resting-state networks in the infant brain. Proc Natl Acad Sci USA 104(39): 15531-15536.
16. Smyser CD, et al. (2010) Longitudinal analysis of neural network development in preterm infants. Cereb Cortex 20(12): 2852-2862.
17. Boly M, et al. (2009) Functional connectivity in the default network during resting state is preserved in a vegetative but not in a brain dead patient. Hum Brain Mapp 30(8): 2393-2400.
18. Vanhaudenhuyse A, et al. (2010) Default network connectivity reflects the level of consciousness in non-communicative brain-damaged patients. Brain 133(Pt 1): 161-171.
19. Liu Y, et al. (2008) Regional homogeneity, functional connectivity and imaging markers of Alzheimer's disease: A review of resting-state fMRI studies. Neuropsychologia 46(6): 1648-1656.
20. Bero AW, et al. (2012) Bidirectional relationship between functional connectivity and amyloid-β deposition in mouse brain. J Neurosci 32(13): 4334-4340.
21. Cazzin C, Ring CJA (2010) "Recent advances in the manipulation of murine gene expression and its utility for the study of human neurological disease. Biochim Biophys Acta 1802(10): 796-807.
22. Buckner RL, Krienen FM, Yeo BT (2013) Opportunities and limitations of intrinsic functional connectivity MRI. Nat Neurosci 16(7): 832-837.
23. Steinbrink J, et al. (2006) Illuminating the BOLD signal: Combined fMRI-fNIRS studies. Magn Reson Imaging 24(4): 495-505.
24. Benveniste H, Blackband S (2002) MR microscopy and high resolution small animal MRI: Applications in neuroscience research. Prog Neurobiol 67(5): 393-420.
25. Bahar S, Suh M, Zhao M, Schwartz TH (2006) Intrinsic optical signal imaging of neocortical seizures: The 'epileptic dip' Neuroreport 17(5): 499-503.
26. Wang LV (2008) Tutorial on photoacoustic microscopy and computed tomography. IEEE J 14(1): 171-179.
27. Yang JM, et al. (2012) Simultaneous functional photoacoustic and ultrasonic endoscopy of internal organs in vivo. Nat Med 18(8): 1297-1302.
28. Gamelin J, et al. (2009) A real-time photoacoustic tomography system for small animals. Opt Express 17(13): 10489-10498.
29. Yao J, et al. (2013) Noninvasive photoacoustic computed tomography of mouse brain metabolism in vivo. Neuroimage 64: 257-266.
30. Xia J, et al. (2011) Three-dimensional photoacoustic tomography based on the focalline concept. J Biomed Opt 16(9):090505.
31. Fox MD, et al. (2005) The human brain is intrinsically organized into dynamic, anticorrelated functional networks. Proc Natl Acad Sci USA 102(27): 9673-9678.
32. Fox MD, Zhang D, Snyder AZ, Raichle ME (2009) The global signal and observed anticorrelated resting state brain networks. J Neurophysiol 101(6): 3270-3283.
33. Laufer J, Zhang E, Raivich G, Beard P (2009) Three-dimensional noninvasive imaging of the vasculature in the mouse brain using a high resolution photoacoustic scanner. Appl Opt 48(10):D299-D306.
34. Pulera MR, et al. (1998) Apoptosis in a neonatal rat model of cerebral hypoxia-ischemia. Stroke 29(12): 2622-2630.
35. Corday E, Irving DW (1960) Effect of cardiac arrhythmias on the cerebral circulation. Am J Cardiol 6: 803-808.
36. Guilfoyle DN, et al. (2013) Functional connectivity fMRI in mouse brain at 7T using isoflurane. J Neurosci Methods 214(2): 144-148.
37. Wang X, Pang Y, Ku G, Stoica G, Wang LV (2003) Three-dimensional laser-induced photoacoustic tomography of mouse brain with the skin and skull intact. Opt Lett 28(19): 1739-1741.
38. White BR, et al. (2009) Resting-state functional connectivity in the human brain revealed with diffuse optical tomography. Neuroimage 47(1): 148-156.
39. Mesquita RC, Franceschini MA, Boas DA (2010) Resting state functional connectivity of the whole head with near-infrared spectroscopy. Biomed Opt Express 1(1): 324-336.
40. Wang LV, Hu S (2012) Photoacoustic tomography: In vivo imaging from organelles to organs. Science 335(6075): 1458-1462.
41. White BR, Liao SM, Ferradal SL, Inder TE, Culver JP (2012) Bedside optical imaging of occipital resting-state functional connectivity in neonates. Neuroimage 59(3): 2529-2538.
42. Yang X, Wang LV (2008) Monkey brain cortex imaging by photoacoustic tomography. J Biomed Opt 13(4):044009-044009, 5.
43. Nie L, et al. (2012) Photoacoustic tomography through a whole adult human skull with a photon recycler. J Biomed Opt 17(11): 110506-110506.
44. Standard A (1993) Z136. 1. American National Standard for the Safe Use of Lasers (American National Standards Institute Inc, New York).
45. Xia J, et al. (2012) Whole-body ring-shaped confocal photoacoustic computed tomography of small animals in vivo. J Biomed Opt 17(5):050506.
46. Xu M, Wang LV (2005) Universal back-projection algorithm for photoacoustic computed tomography. Phys Rev E Stat Nonlin Soft Matter Phys 71(1 Pt 2):016706.
47. Murphy K, Birn RM, Handwerker DA, Jones TB, Bandettini PA (2009) The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced? Neuroimage 44(3): 893-905.
48. Fox MD, Greicius M (2010) Clinical applications of resting state functional connectivity. Front Syst Neurosci 4:19.
49. Damoiseaux JS, Greicius MD (2009) Greater than the sum of its parts: A review of studies combining structural connectivity and resting-state functional connectivity. Brain Struct Funct 213(6): 525-533.
50. Birn RM, et al. (2008) The effect of respiration variations on independent component analysis results of resting state functional connectivity. Hum Brain Mapp 29(7): 740-750.
51. Fox MD, Snyder AZ, Zacks JM, Raichle ME (2006) Coherent spontaneous activity accounts for trial-to-trial variability in human evoked brain responses. Nat Neurosci 9(1): 23-25.
52. Rombouts SA, Stam CJ, Kuijer JP, Scheltens P, Barkhof F (2003) Identifying confounds to increase specificity during a "no task condition". Evidence for hippocampal connectivity using fMRI. Neuroimage 20(2): 1236-1245.
53. Fransson P (2005) Spontaneous low-frequency BOLD signal fluctuations: An fMRI investigation of the resting-state default mode of brain function hypothesis. Hum Brain Mapp 26(1): 15-29.
54. Laufs H, et al. (2003) Electroencephalographic signatures of attentional and cognitive default modes in spontaneous brain activity fluctuations at rest. Proc Natl Acad Sci USA 100(19): 11053-11058.
55. Vincent JL, et al. (2006) Coherent spontaneous activity identifies a hippocampalparietal memory network. J Neurophysiol 96(6): 3517-3531.
56. Hampson M, Peterson BS, Skudlarski P, Gatenby JC, Gore JC (2002) Detection of functional connectivity using temporal correlations in MR images. Hum Brain Mapp 15(4): 247-262.
57. Fox MD, Corbetta M, Snyder AZ, Vincent JL, Raichle ME (2006) Spontaneous neuronal activity distinguishes human dorsal and ventral attention systems. Proc Natl Acad Sci USA 103(26): 10046-10051.
58. Biswal BB, Van Kylen J, Hyde JS (1997) Simultaneous assessment of flow and BOLD signals in resting-state functional connectivity maps. NMR Biomed 10(4-5): 165-170.
59. Goulas A, Uylings HB, Stiers P (2012) Unravelling the intrinsic functional organization of the human lateral frontal cortex: A parcellation scheme based on resting state fMRI. J Neurosci 32(30): 10238-10252.
60. Ng L, et al. (2009) An anatomic gene expression atlas of the adult mouse brain. Nat Neurosci 12(3): 356-362.