-
1
-
-
0018419825
-
Methanogens: Reevaluation of a unique biological group
-
Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
-
(1979)
Microbiol Rev
, vol.43
, pp. 260-296
-
-
Balch, W.E.1
Fox, G.E.2
Magrum, L.J.3
Woese, C.R.4
Wolfe, R.S.5
-
2
-
-
0020700180
-
Lignin degradation by Streptomyces viridosporus: Isolation and characterization of a new polymeric lignin degradation intermediate
-
Crawford, D. L., Pometto, A. L. & Crawford, R. L. (1983). Lignin degradation by Streptomyces viridosporus: isolation and characterization of a new polymeric lignin degradation intermediate. Appl Environ Microbiol 45, 898-904.
-
(1983)
Appl Environ Microbiol
, vol.45
, pp. 898-904
-
-
Crawford, D.L.1
Pometto, A.L.2
Crawford, R.L.3
-
4
-
-
0024358339
-
Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
-
Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in micro-dilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 224-229
-
-
Ezaki, T.1
Hashimoto, Y.2
Yabuuchi, E.3
-
5
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
6
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
7
-
-
84959747425
-
Towards defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
8
-
-
0027180067
-
Molecular biology of the lignindegrading basidiomycete Phanerochaete chrysosporium
-
Gold, M. H. & Alic, M. (1993). Molecular biology of the lignindegrading basidiomycete Phanerochaete chrysosporium. Microbiol Rev 57, 605-622.
-
(1993)
Microbiol Rev
, vol.57
, pp. 605-622
-
-
Gold, M.H.1
Alic, M.2
-
9
-
-
26244468548
-
Loktanella agnita sp. nov. and Loktanella rosea sp. nov., from the north-west Pacific Ocean
-
Ivanova, E. P., Zhukova, N. V., Lysenko, A. M., Gorshkova, N. M., Sergeev, A. F., Mikhailov, V. V. & Bowman, J. P. (2005). Loktanella agnita sp. nov. and Loktanella rosea sp. nov., from the north-west Pacific Ocean. Int J Syst Evol Microbiol 55, 2203-2207.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2203-2207
-
-
Ivanova, E.P.1
Zhukova, N.V.2
Lysenko, A.M.3
Gorshkova, N.M.4
Sergeev, A.F.5
Mikhailov, V.V.6
Bowman, J.P.7
-
10
-
-
44449086583
-
Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater
-
Kodama, Y., Stiknowati, L. I., Ueki, A., Ueki, K. & Watanabe, K. (2008). Thalassospira tepidiphila sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from seawater. Int J Syst Evol Microbiol 58, 711-715.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 711-715
-
-
Kodama, Y.1
Stiknowati, L.I.2
Ueki, A.3
Ueki, K.4
Watanabe, K.5
-
11
-
-
0001579749
-
Fatty acid and menaquinone analysis of actinomycetes and related organisms
-
In Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press
-
Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics, pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
-
(1985)
Chemical Methods in Bacterial Systematics
, pp. 173-199
-
-
Kroppenstedt, R.M.1
-
12
-
-
25444503758
-
Graphical representation of ribosomal RNA probe accessibility data using ARB software package
-
Kumar, Y., Westram, R., Behrens, S., Fuchs, B., Glöckner, F. O., Amann, R., Meier, H. & Ludwig, W. (2005). Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics 6, 61.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 61
-
-
Kumar, Y.1
Westram, R.2
Behrens, S.3
Fuchs, B.4
Glöckner, F.O.5
Amann, R.6
Meier, H.7
Ludwig, W.8
-
13
-
-
33746357860
-
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package
-
Kumar, Y., Westram, R., Kipfer, P., Meier, H. & Ludwig, W. (2006). Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using ARB software package. BMC Bioinformatics 7, 240.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 240
-
-
Kumar, Y.1
Westram, R.2
Kipfer, P.3
Meier, H.4
Ludwig, W.5
-
14
-
-
0001857117
-
16S/23S rRNA sequencing
-
In Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
-
Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
15
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A. & other authors (2007). Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
-
16
-
-
33847305883
-
Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov
-
Liu, C., Wu, Y., Li, L., Ma, Y. & Shao, Z. (2007). Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov. Int J Syst Evol Microbiol 57, 316-320.
-
(2007)
Int J Syst Evol Microbiol
, vol.57
, pp. 316-320
-
-
Liu, C.1
Wu, Y.2
Li, L.3
Ma, Y.4
Shao, Z.5
-
17
-
-
0036022953
-
Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the a-Proteobacteria
-
López-López, A., Pujalte, M. J., Benlloch, S., Mata-Roig, M., Rosselló-Mora, R., Garay, E. & Rodríguez-Valera, F. (2002). Thalassospira lucentensis gen. nov., sp. nov., a new marine member of the a-Proteobacteria. Int J Syst Evol Microbiol 52, 1277-1283.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1277-1283
-
-
López-López, A.1
Pujalte, M.J.2
Benlloch, S.3
Mata-Roig, M.4
Rosselló-Mora, R.5
Garay, E.6
Rodríguez-Valera, F.7
-
18
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, B.A.6
Lai, T.7
Steppi, S.8
-
19
-
-
0033383704
-
Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds
-
Masai, E., Katayama, Y., Nishikawa, S. & Fukuda, M. (1999). Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds. J Ind Microbiol Biotechnol 23, 364-373.
-
(1999)
J Ind Microbiol Biotechnol
, vol.23
, pp. 364-373
-
-
Masai, E.1
Katayama, Y.2
Nishikawa, S.3
Fukuda, M.4
-
20
-
-
0000198211
-
Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
21
-
-
0017376921
-
Polar lipid composition in the classification of Nocardia and related bacteria
-
Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
-
(1977)
Int J Syst Bacteriol
, vol.27
, pp. 104-117
-
-
Minnikin, D.E.1
Patel, P.V.2
Alshamaony, L.3
Goodfellow, M.4
-
22
-
-
0021182575
-
An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids
-
Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
-
(1984)
J Microbiol Methods
, vol.2
, pp. 233-241
-
-
Minnikin, D.E.1
O'Donnell, A.G.2
Goodfellow, M.3
Alderson, G.4
Athalye, M.5
Schaal, A.6
Parlett, J.H.7
-
23
-
-
0031080294
-
Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms
-
Nishijima, M., Araki-Sakai, M. & Sano, H. (1997). Identification of isoprenoid quinones by frit-FAB liquid chromatography-mass spectrometry for the chemotaxonomy of microorganisms. J Microbiol Methods 28, 113-122.
-
(1997)
J Microbiol Methods
, vol.28
, pp. 113-122
-
-
Nishijima, M.1
Araki-Sakai, M.2
Sano, H.3
-
24
-
-
84880299805
-
Screening and phylogenetic analysis of deep-sea bacteria capable of metabolizing lignin-derived aromatic compounds
-
Ohta, Y., Nishi, S., Haga, T., Tsubouchi, T., Hasegawa, R., Konishi, M., Nagano, Y., Tsuruwaka, Y., Shimane, Y. & other authors (2012). Screening and phylogenetic analysis of deep-sea bacteria capable of metabolizing lignin-derived aromatic compounds. Open J Marine Sci 2, 177-187.
-
(2012)
Open J Marine Sci
, vol.2
, pp. 177-187
-
-
Ohta, Y.1
Nishi, S.2
Haga, T.3
Tsubouchi, T.4
Hasegawa, R.5
Konishi, M.6
Nagano, Y.7
Tsuruwaka, Y.8
Shimane, Y.9
-
25
-
-
84856046171
-
Thalassospira permensis sp. nov., a new terrestrial halotolerant bacterium isolated from a naphthalene-utilizing microbial consortium
-
Plotnikova, E. G., Anan'ina, L. N., Krausova, V. I., Ariskina, E. V., Prisyazhnaya, N. V., Lebedev, A. T., Demakov, V. A. & Evtushenko, L. I. (2011). Thalassospira permensis sp. nov., a new terrestrial halotolerant bacterium isolated from a naphthalene-utilizing microbial consortium. Mikrobiologiia 80, 691-699.
-
(2011)
Mikrobiologiia
, vol.80
, pp. 691-699
-
-
Plotnikova, E.G.1
Anan'ina, L.N.2
Krausova, V.I.3
Ariskina, E.V.4
Prisyazhnaya, N.V.5
Lebedev, A.T.6
Demakov, V.A.7
Evtushenko, L.I.8
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
28
-
-
0000612080
-
Phenotypic characteristics
-
In Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
-
Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characteristics. In Manual of Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
-
(1994)
Manual of Methods for General and Molecular Bacteriology
, pp. 607-654
-
-
Smibert, R.M.1
Krieg, N.R.2
-
29
-
-
0002671410
-
Some probabilistic and statistical problems in the analysis of DNA sequences
-
Tavaré, S. (1986). Some probabilistic and statistical problems in the analysis of DNA sequences. Lect Math Life Sci 17, 57-86.
-
(1986)
Lect Math Life Sci
, vol.17
, pp. 57-86
-
-
Tavaré, S.1
-
30
-
-
0017366945
-
Decomposition of 14Clabelled lignin and phenols by a Nocardia sp
-
Trojanowski, J., Haider, K. & Sundman, V. (1977). Decomposition of 14Clabelled lignin and phenols by a Nocardia sp. Arch Microbiol 114, 149-153.
-
(1977)
Arch Microbiol
, vol.114
, pp. 149-153
-
-
Trojanowski, J.1
Haider, K.2
Sundman, V.3
-
31
-
-
84878831065
-
Brevundimonas abyssalis sp. nov., a dimorphic prosthecate bacterium isolated from deep-subsea floor sediment
-
Tsubouchi, T., Shimane, Y., Usui, K., Shimamura, S., Mori, K., Hiraki, T., Tame, A., Uematsu, K., Maruyama, T. & Hatada, Y. (2013). Brevundimonas abyssalis sp. nov., a dimorphic prosthecate bacterium isolated from deep-subsea floor sediment. Int J Syst Evol Microbiol 63, 1987-1994.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 1987-1994
-
-
Tsubouchi, T.1
Shimane, Y.2
Usui, K.3
Shimamura, S.4
Mori, K.5
Hiraki, T.6
Tame, A.7
Uematsu, K.8
Maruyama, T.9
Hatada, Y.10
-
32
-
-
0000770675
-
International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. e. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.9
-
33
-
-
0001279038
-
Preparation of genomic DNA from bacteria
-
In Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley
-
Wilson, K. (1987). Preparation of genomic DNA from bacteria. In Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5. Edited by F. M. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith & K. Struhl. New York: Wiley.
-
(1987)
Current Protocols in Molecular Biology
, pp. 241-245
-
-
Wilson, K.1
-
34
-
-
59449110477
-
Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions
-
Zhao, B., Wang, H., Mao, X. & Li, R. (2009). Biodegradation of phenanthrene by a halophilic bacterial consortium under aerobic conditions. Curr Microbiol 58, 205-210.
-
(2009)
Curr Microbiol
, vol.58
, pp. 205-210
-
-
Zhao, B.1
Wang, H.2
Mao, X.3
Li, R.4
-
35
-
-
77952708689
-
Thalassospira xianhensis sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium
-
Zhao, B., Wang, H., Li, R. & Mao, X. (2010). Thalassospira xianhensis sp. nov., a polycyclic aromatic hydrocarbon-degrading marine bacterium. Int J Syst Evol Microbiol 60, 1125-1129.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 1125-1129
-
-
Zhao, B.1
Wang, H.2
Li, R.3
Mao, X.4
-
36
-
-
12444337674
-
Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics
-
Zwickl, D. & Holder, M. (2004). Model parameterization, prior distributions, and the general time-reversible model in Bayesian phylogenetics. Syst Biol 53, 877-888.
-
(2004)
Syst Biol
, vol.53
, pp. 877-888
-
-
Zwickl, D.1
Holder, M.2
|