Mycobacterium paragordonae sp. nov., a slowly growing, scotochromogenic species closely related to Mycobacterium gordonae

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 1, 2014, Pages 39-45

  Kim, Byoung Jun ^a   Hong, Seok Hyun ^a   Kook, Yoon Hoh ^a   Kim, Bum Joon ^a  

^a Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S;

ARTICLE; BACTERIAL STRAIN; DNA DNA HYBRIDIZATION; GENE SEQUENCE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MYCOBACTERIUM; MYCOBACTERIUM GORDONAE; MYCOBACTERIUM PARAGORDONAE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; RHODOCOCCUS EQUI; UNINDEXED SEQUENCE;

BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; DNA, BACTERIAL; GENES, BACTERIAL; HUMANS; LUNG DISEASES; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; MYCOBACTERIUM INFECTIONS; NONTUBERCULOUS MYCOBACTERIA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SPUTUM;

EID: 84891891845     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.051540-0     Document Type: Article

References (25)

1. Felsenstein, J. (1985). Confidence-limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
2. Fitch, W. M. (1971). Toward defining course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
3. Itoh, S., Kazumi, Y., Abe, C. & Takahashi, M. (2003). Heterogeneity of RNA polymerase gene (rpoB) sequences of Mycobacterium gordonae clinical isolates identified with a DNA probe kit and by conventional methods. J Clin Microbiol 41, 1656-1663.
4. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
5. Kent, P. T. & Kubica, G. P. (1985). Public Health Mycobacteriology: a Guide for the Level III Laboratory. Atlanta: Centers for Disease Control and Prevention.
6. Kim, B. J., Lee, S. H., Lyu, M. A., Kim, S. J., Bai, G. H., Chae, G. T., Kim, E. C., Cha, C. Y. & Kook, Y. H. (1999). Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB). J Clin Microbiol 37, 1714-1720.
7. Kim, H., Kim, S. H., Shim, T. S., Kim, M. N., Bai, G. H., Park, Y. G., Lee, S. H., Chae, G. T., Cha, C. Y. & other authors (2005). Differentiation of Mycobacterium species by analysis of the heat-shock protein 65 gene (hsp65). Int J Syst Evol Microbiol 55, 1649-1656.
8. Kim, B. J., Jeong, J., Lee, S. H., Kim, S. R., Yu, H. K., Park, Y. G., Kim, K. J., Kook, Y. H. & Kim, B. J. (2012). Mycobacterium koreense sp. nov., a slowly growing non-chromogenic species closely related to Mycobacterium triviale. Int J Syst Evol Microbiol 62, 1289-1295.
9. Kim, B. J., Hong, S. H., Yu, H. K., Park, Y. G., Jeong, J., Lee, S. H., Kim, S. R., Kim, K., Kook, Y. H. & Kim, B. J. (2013a). Mycobacterium parakoreense sp. nov., a slowly growing non-chromogenic species related to Mycobacterium koreense, isolated from a human clinical specimen. Int J Syst Evol Microbiol 63, 2301-2308.
10. Kim, B. J., Math, R. K., Jeon, C. O., Yu, H. K., Park, Y. G., Kook, Y. H. & Kim, B. J. (2013b). Mycobacterium yongonense sp. nov., a slowgrowing non-chromogenic species closely related to Mycobacterium intracellulare. Int J Syst Evol Microbiol 63, 192-199.
11. Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
12. Lee, H., Lee, S. A., Lee, I. K., Yu, H. K., Park, Y. G., Jeong, J., Lee, S. H., Kim, S. R., Hyun, J. W. & other authors (2010a). Mycobacterium paraterrae sp. nov. recovered from a clinical specimen: novel chromogenic slow growing mycobacteria related to Mycobacterium terrae complex. Microbiol Immunol 54, 46-53.
13. Lee, H. K., Lee, S. A., Lee, I. K., Yu, H. K., Park, Y. G., Hyun, J. W., Kim, K., Kook, Y. H. & Kim, B. J. (2010b). Mycobacterium paraseoulense sp. nov., a slowly growing, scotochromogenic species related genetically to Mycobacterium seoulense. Int J Syst Evol Microbiol 60, 439-443.
14. Magee, J. G. & Ward, A. C. (2012). Genus I. Mycobacterium. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 5, pp. 312-375. Edited by M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, K. Suzuki, W. Ludwig & W. B. Whitman. New York: Springer.
15. Mun, H. S., Kim, H. J., Oh, E. J., Kim, H., Bai, G. H., Yu, H. K., Park, Y. G., Cha, C. Y., Kook, Y. H. & Kim, B. J. (2007). Mycobacterium seoulense sp. nov., a slowly growing scotochromogenic species. Int J Syst Evol Microbiol 57, 594-599.
16. Mun, H. S., Park, J. H., Kim, H., Yu, H. K., Park, Y. G., Cha, C. Y., Kook, Y. H. & Kim, B. J. (2008). Mycobacterium senuense sp. nov., a slowly growing, non-chromogenic species closely related to the Mycobacterium terrae complex. Int J Syst Evol Microbiol 58, 641-646.
17. Pérez, E., Constant, P., Lemassu, A., Laval, F., Daffé, M. & Guilhot, C. (2004). Characterization of three glycosyltransferases involved in the biosynthesis of the phenolic glycolipid antigens from the Mycobacterium tuberculosis complex. J Biol Chem 279, 42574-42583.
18. Pfyffer, G. E. (2007). Mycobacterium: General characteristics, laboratory detection, and staining procedures. In Manual of Clinical Microbiology, 9th edn, vol. 1, p. 543-572. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington: American Society for Microbiology.
19. Vincent, V. & Gutierres, M. C. (2007). Mycobacterium: laboratory characteristics of slowly growing mycobacteria. In Manual of Clinical Microbiology, 9th edn, vol. 1, p. 573-588. Edited by P. R. Murray, E. J. Baron, J. H. Jorgensen, M. L. Landry & M. A. Pfaller. Washington: American Society for Microbiology.
20. Roth, A., Fischer, M., Hamid, M. E., Michalke, S., Ludwig, W. & Mauch, H. (1998). Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J Clin Microbiol 36, 139-147.
21. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
22. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
23. Springer, B., Stockman, L., Teschner, K., Roberts, G. D. & Böttger, E. C. (1996). Two-laboratory collaborative study on identification of mycobacteria: molecular versus phenotypic methods. J Clin Microbiol 34, 296-303.
24. Turenne, C. Y., Tschetter, L., Wolfe, J. & Kabani, A. (2001). Necessity of quality-controlled 16S rRNA gene sequence databases: identifying nontuberculous Mycobacterium species. J Clin Microbiol 39, 3637-3648.
25. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad-hoc-committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.