메뉴 건너뛰기




Volumn 32, Issue 8, 2013, Pages 635-640

Using cryoEM reconstruction and phase extension to determine crystal structure of Bacteriophage φ6 major capsid protein

Author keywords

Cryo electron microscopy; Molecular replacement; Non crystallographic symmetry; Phase extension; Virus capsid protein

Indexed keywords

CAPSID PROTEIN;

EID: 84891889778     PISSN: 15723887     EISSN: 18758355     Source Type: Journal    
DOI: 10.1007/s10930-013-9526-x     Document Type: Article
Times cited : (4)

References (29)
  • 1
    • 0033007294 scopus 로고    scopus 로고
    • Precise packaging of the three genomic segments of the double- stranded- RNA bacteriophage φ6
    • Mindich L (1999) Precise packaging of the three genomic segments of the double-stranded-RNA bacteriophage phi6. Microbiol Mol Biol Rev MMBR 63:149-160 (Pubitemid 29116090)
    • (1999) Microbiology and Molecular Biology Reviews , vol.63 , Issue.1 , pp. 149-160
    • Mindich, L.1
  • 2
    • 1542268889 scopus 로고    scopus 로고
    • Packaging, replication and recombination of the segmented genomes of bacteriophage Φ6 and its relatives
    • DOI 10.1016/j.virusres.2003.12.008, PII S0168170203003721
    • Mindich L (2004) Packaging, replication and recombination of the segmented genome of bacteriophage Phi6 and its relatives. Virus Res 101:83-92 (Pubitemid 38317111)
    • (2004) Virus Research , vol.101 , Issue.1 , pp. 83-92
    • Mindich, L.1
  • 3
    • 1542328800 scopus 로고    scopus 로고
    • Self-assembly of double-stranded RNA bacteriophages
    • DOI 10.1016/j.virusres.2003.12.009, PII S0168170203003745
    • Poranen MM, Tuma R (2004) Self-assembly of double-stranded RNA bacteriophages. Virus Res 101:93-100 (Pubitemid 38317112)
    • (2004) Virus Research , vol.101 , Issue.1 , pp. 93-100
    • Poranen, M.M.1    Tuma, R.2
  • 4
    • 84858182754 scopus 로고    scopus 로고
    • Packaging in dsRNA viruses
    • 1:CAS:528:DC%2BC38Xht12mt7vF
    • Mindich L (2012) Packaging in dsRNA viruses. Adv Exp Med Biol 726:601-608
    • (2012) Adv Exp Med Biol , vol.726 , pp. 601-608
    • Mindich, L.1
  • 5
    • 84858221251 scopus 로고    scopus 로고
    • Assembly of large icosahedral double-stranded RNA viruses
    • 1:CAS:528:DC%2BC38Xht12mt73L
    • Poranen MM, Bamford DH (2012) Assembly of large icosahedral double-stranded RNA viruses. Adv Exp Med Biol 726:379-402
    • (2012) Adv Exp Med Biol , vol.726 , pp. 379-402
    • Poranen, M.M.1    Bamford, D.H.2
  • 6
    • 33744821066 scopus 로고    scopus 로고
    • Structure of the Bacteriophage φ{symbol}6 Nucleocapsid Suggests a Mechanism for Sequential RNA Packaging
    • DOI 10.1016/j.str.2006.03.018, PII S096921260600219X
    • Huiskonen JT, de Haas F, Bubeck D, Bamford DH, Fuller SD, Butcher SJ (2006) Structure of the bacteriophage phi6 nucleocapsid suggests a mechanism for sequential RNA packaging. Structure 14:1039-1048 (Pubitemid 43831662)
    • (2006) Structure , vol.14 , Issue.6 , pp. 1039-1048
    • Huiskonen, J.T.1    De Haas, F.2    Bubeck, D.3    Bamford, D.H.4    Fuller, S.D.5    Butcher, S.J.6
  • 8
    • 81355160170 scopus 로고    scopus 로고
    • Stepwise expansion of the bacteriophage varphi6 procapsid: Possible packaging intermediates
    • 10.1016/j.jmb.2011.10.004 1:CAS:528:DC%2BC3MXhsV2mt7rO
    • Nemecek D, Cheng N, Qiao J, Mindich L, Steven AC, Heymann JB (2011) Stepwise expansion of the bacteriophage varphi6 procapsid: possible packaging intermediates. J Mol Biol 414:260-271
    • (2011) J Mol Biol , vol.414 , pp. 260-271
    • Nemecek, D.1    Cheng, N.2    Qiao, J.3    Mindich, L.4    Steven, A.C.5    Heymann, J.B.6
  • 11
    • 41949099222 scopus 로고    scopus 로고
    • Towards atomic resolution structural determination by single-particle cryo-electron microscopy
    • 10.1016/j.sbi.2008.03.004 1:CAS:528:DC%2BD1cXkvFCls7k%3D
    • Zhou ZH (2008) Towards atomic resolution structural determination by single-particle cryo-electron microscopy. Curr Opin Struct Biol 18:218-228
    • (2008) Curr Opin Struct Biol , vol.18 , pp. 218-228
    • Zhou, Z.H.1
  • 12
    • 79953108462 scopus 로고    scopus 로고
    • Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy
    • 10.1016/j.sbi.2011.01.008 1:CAS:528:DC%2BC3MXkt1KisL8%3D
    • Grigorieff N, Harrison SC (2011) Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy. Curr Opin Struct Biol 21:265-273
    • (2011) Curr Opin Struct Biol , vol.21 , pp. 265-273
    • Grigorieff, N.1    Harrison, S.C.2
  • 13
    • 84878580683 scopus 로고    scopus 로고
    • Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
    • 10.7554/eLife.00461
    • Bai XC, Fernandez IS, McMullan G, Scheres SH (2013) Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. eLife. 2:e00461
    • (2013) ELife. , vol.2 , pp. 00461
    • Bai, X.C.1    Fernandez, I.S.2    McMullan, G.3    Scheres, S.H.4
  • 14
    • 33745933955 scopus 로고    scopus 로고
    • HKL-3000: The integration of data reduction and structure solution - From diffraction images to an initial model in minutes
    • DOI 10.1107/S0907444906019949
    • Minor W, Cymborowski M, Otwinowski Z, Chruszcz M (2006) HKL-3000: the integration of data reduction and structure solution-from diffraction images to an initial model in minutes. Acta Crystallogr D Biol Crystallogr 62:859-866 (Pubitemid 44125661)
    • (2006) Acta Crystallographica Section D: Biological Crystallography , vol.62 , Issue.8 , pp. 859-866
    • Minor, W.1    Cymborowski, M.2    Otwinowski, Z.3    Chruszcz, M.4
  • 16
    • 0031058884 scopus 로고    scopus 로고
    • Rotation function calculations with GLRF program
    • DOI 10.1016/S0076-6879(97)76080-4
    • Tong L, Rossmann MG (1997) Rotation function calculations with GLRF program. Methods Enzymol 276:594-611 (Pubitemid 27085625)
    • (1997) Methods in Enzymology , vol.276 , pp. 594-611
    • Tong, L.1    Rossmann, M.G.2
  • 17
    • 84869022036 scopus 로고    scopus 로고
    • Packaging accessory protein P7 and polymerase P2 have mutually occluding binding sites inside the bacteriophage 6 procapsid
    • 10.1128/JVI.01347-12 1:CAS:528:DC%2BC38XhsFCmur%2FL
    • Nemecek D, Qiao J, Mindich L, Steven AC, Heymann JB (2012) Packaging accessory protein P7 and polymerase P2 have mutually occluding binding sites inside the bacteriophage 6 procapsid. J Virol 86:11616-11624
    • (2012) J Virol , vol.86 , pp. 11616-11624
    • Nemecek, D.1    Qiao, J.2    Mindich, L.3    Steven, A.C.4    Heymann, J.B.5
  • 19
    • 77952581453 scopus 로고    scopus 로고
    • Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions
    • 10.1016/j.jsb.2010.03.007 1:CAS:528:DC%2BC3cXlvVWnurc%3D
    • Pintilie GD, Zhang J, Goddard TD, Chiu W, Gossard DC (2010) Quantitative analysis of cryo-EM density map segmentation by watershed and scale-space filtering, and fitting of structures by alignment to regions. J Struct Biol 170:427-438
    • (2010) J Struct Biol , vol.170 , pp. 427-438
    • Pintilie, G.D.1    Zhang, J.2    Goddard, T.D.3    Chiu, W.4    Gossard, D.C.5
  • 22
    • 0031574325 scopus 로고    scopus 로고
    • Not your average density
    • Kleywegt GJ, Read RJ (1997) Not your average density. Structure 5:1557-1569 (Pubitemid 28051971)
    • (1997) Structure , vol.5 , Issue.12 , pp. 1557-1569
    • Kleywegt, G.J.1    Read, R.J.2
  • 24
    • 84881406900 scopus 로고    scopus 로고
    • Cystovirus maturation at atomic resolution
    • 10.1016/j.str.2013.07.009 1:CAS:528:DC%2BC3sXht1emsLbE
    • Veesler D, Johnson JE (2013) Cystovirus maturation at atomic resolution. Structure 21:1266-1268
    • (2013) Structure , vol.21 , pp. 1266-1268
    • Veesler, D.1    Johnson, J.E.2
  • 25
    • 37349110734 scopus 로고    scopus 로고
    • Fitting molecular fragments into electron density
    • 10.1107/S0907444907033938 1:CAS:528:DC%2BD2sXhsVGjt7bK
    • Cowtan K (2008) Fitting molecular fragments into electron density. Acta Crystallogr D Biol Crystallogr 64:83-89
    • (2008) Acta Crystallogr D Biol Crystallogr , vol.64 , pp. 83-89
    • Cowtan, K.1
  • 29
    • 67349273766 scopus 로고    scopus 로고
    • The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry
    • 10.1038/emboj.2009.109 1:CAS:528:DC%2BD1MXlt1GmtLo%3D
    • Duquerroy S, Da Costa B, Henry C, Vigouroux A, Libersou S, Lepault J, Navaza J, Delmas B, Rey FA (2009) The picobirnavirus crystal structure provides functional insights into virion assembly and cell entry. EMBO J 28:1655-1665
    • (2009) EMBO J , vol.28 , pp. 1655-1665
    • Duquerroy, S.1    Da Costa, B.2    Henry, C.3    Vigouroux, A.4    Libersou, S.5    Lepault, J.6    Navaza, J.7    Delmas, B.8    Rey, F.A.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.