-
1
-
-
0027951393
-
Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs)
-
Brubaker, C.L. and Wendel, J.F. (1994) Reevaluating the origin of domesticated cotton (Gossypium hirsutum; Malvaceae) using nuclear restriction fragment length polymorphisms (RFLPs). Am. J. Bot., 81, 1309-1326.
-
(1994)
Am. J. Bot.
, vol.81
, pp. 1309-1326
-
-
Brubaker, C.L.1
Wendel, J.F.2
-
2
-
-
0001900057
-
The origin and domestication of cotton
-
Smith, C.W. and Cothren, J.T. (eds) Wiley, New York
-
Brubaker, C.L., Bourland, F.M. and Wendel, J.F. (1999) The origin and domestication of cotton. In: Smith, C.W. and Cothren, J.T. (eds), 'Cotton: Origin, History, Technology and Production'. Wiley, New York, pp. 3-31.
-
(1999)
Cotton: Origin, History, Technology and Production
, pp. 3-31
-
-
Brubaker, C.L.1
Bourland, F.M.2
Wendel, J.F.3
-
3
-
-
0001627928
-
Allozyme evidence for the origin and diversification of Gossypium barbadense L
-
Percy, R.G. and Wendel, J.F. (1990) Allozyme evidence for the origin and diversification of Gossypium barbadense L. Theor. Appl. Genet., 79, 529-542.
-
(1990)
Theor. Appl. Genet.
, vol.79
, pp. 529-542
-
-
Percy, R.G.1
Wendel, J.F.2
-
4
-
-
0001632947
-
New World tetraploid cottons contain Old World cytoplasm
-
Wendel, J.F. (1989) New World tetraploid cottons contain Old World cytoplasm. Proc. Natl Acad. Sci. USA, 86, 4132-4136.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 4132-4136
-
-
Wendel, J.F.1
-
5
-
-
0003025858
-
Genes, jeans, and genomes: Reconstructing the history of cotton
-
van Raamsdonk, L.W.D. and den Nijs, J.C.M. (eds) Hugo de Vries Laboratory, Amsterdam, The Netherlands
-
Wendel, J.F., Small, R.L., Cronn, R.C. and Brubaker, C.L. (1999) Genes, jeans, and genomes: reconstructing the history of cotton. In: van Raamsdonk, L.W.D. and den Nijs, J.C.M. (eds), Plant Evolution in Man-Made Habitats. Proceedings of the VIIth International Symposium of the International Organization of Plant Biosystematists. Hugo de Vries Laboratory, Amsterdam, The Netherlands, pp. 133-161.
-
(1999)
Plant Evolution in Man-Made Habitats. Proceedings of the VIIth International Symposium of the International Organization of Plant Biosystematists
, pp. 133-161
-
-
Wendel, J.F.1
Small, R.L.2
Cronn, R.C.3
Brubaker, C.L.4
-
6
-
-
84871428041
-
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
-
Paterson, A.H., Wendel, J.F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K.C., Shu, S., Udall, J. et al. (2012) Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 492, 423-427.
-
(2012)
Nature
, vol.492
, pp. 423-427
-
-
Paterson, A.H.1
Wendel, J.F.2
Gundlach, H.3
Guo, H.4
Jenkins, J.5
Jin, D.6
Llewellyn, D.7
Showmaker, K.C.8
Shu, S.9
Udall, J.10
-
7
-
-
84866941666
-
The draft genome of a diploid cotton Gossypium raimondii
-
Wang, K.B., Wang, Z.W., Li, F.G., Ye, W.W., Wang, J.Y., Song, G.L., Yue, Z., Cong, L., Shang, H.H., Zhu, S.L. et al. (2012) The draft genome of a diploid cotton Gossypium raimondii. Nat. Genet., 44, 1098-1103.
-
(2012)
Nat. Genet.
, vol.44
, pp. 1098-1103
-
-
Wang, K.B.1
Wang, Z.W.2
Li, F.G.3
Ye, W.W.4
Wang, J.Y.5
Song, G.L.6
Yue, Z.7
Cong, L.8
Shang, H.H.9
Zhu, S.L.10
-
8
-
-
84891815896
-
CottonDB
-
January 14-18, 2012, San Diego, CA, USA
-
Yu, J., Kohel, R., Hinze, L., Yu, J.Z., Frelichowski, J., Ficklin, S.G., Main, D. and Percy, R.G. (2012) CottonDB. In: Proceedings of the International Plant and Animal Genome Conference: January 14-18, 2012, San Diego, CA, USA.
-
(2012)
Proceedings of the International Plant and Animal Genome Conference
-
-
Yu, J.1
Kohel, R.2
Hinze, L.3
Yu, J.Z.4
Frelichowski, J.5
Ficklin, S.G.6
Main, D.7
Percy, R.G.8
-
9
-
-
0001952974
-
The ACEDB genome database
-
Suhai, S. (ed.) Springer, USA
-
Durbin, R. and Thierry-Mieg, J. (1994) The ACEDB genome database. In: Suhai, S. (ed.), Computational Methods in Genome Research. Springer, USA, pp. 45-55.
-
(1994)
Computational Methods in Genome Research
, pp. 45-55
-
-
Durbin, R.1
Thierry-Mieg, J.2
-
10
-
-
33847170271
-
CMD: A cotton microsatellite database resource for Gossypium genomics
-
Blenda, A., Scheffler, J., Scheffler, B., Palmer, M., Lacape, J., Yu, J.Z., Jesudurai, C., Jung, S., Muthukumar, S., Yellambalase, P. et al. (2006) CMD: a cotton microsatellite database resource for Gossypium genomics. BMC Genomics, 7, 132.
-
(2006)
BMC Genomics
, vol.7
, pp. 132
-
-
Blenda, A.1
Scheffler, J.2
Scheffler, B.3
Palmer, M.4
Lacape, J.5
Yu, J.Z.6
Jesudurai, C.7
Jung, S.8
Muthukumar, S.9
Yellambalase, P.10
-
11
-
-
84876551146
-
TropGeneDB, the multi-tropical information system updated and expanded
-
Hamelin, C., Sempere, G., Jouffe, V. and Ruiz, M. (2013) TropGeneDB, the multi-tropical information system updated and expanded. Nucleic Acids Res., 41, D1172-D1175.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
Hamelin, C.1
Sempere, G.2
Jouffe, V.3
Ruiz, M.4
-
12
-
-
84864041425
-
Tripal: A construction toolkit for online genome databases
-
Oxford
-
Ficklin, S.P., Sanderson, L., Cheng, C.H., Staton, M.E., Lee, T., Cho, I.H., Jung, S., Bett, K.E. and Main, D. (2011) Tripal: a construction toolkit for online genome databases. Database (Oxford), 2011, bar044.
-
(2011)
Database
, vol.2011
-
-
Ficklin, S.P.1
Sanderson, L.2
Cheng, C.H.3
Staton, M.E.4
Lee, T.5
Cho, I.H.6
Jung, S.7
Bett, K.E.8
Main, D.9
-
13
-
-
79952015982
-
Evolution of the Sequence Ontology terms and relationships
-
Mungall, C.J., Batchelor, C. and Eilbeck, K. (2011) Evolution of the Sequence Ontology terms and relationships. J. Biomed. Inform., 44, 87-93.
-
(2011)
J. Biomed. Inform.
, vol.44
, pp. 87-93
-
-
Mungall, C.J.1
Batchelor, C.2
Eilbeck, K.3
-
14
-
-
22044443709
-
The sequence ontology: A tool for unification of genome annotations
-
Yandell, M., Stein, L., Durbin, R. and Ashburner, M. (2005) The sequence ontology: a tool for unification of genome annotations. Genome Biol., 6, R44.
-
(2005)
Genome Biol.
, vol.6
-
-
Yandell, M.1
Stein, L.2
Durbin, R.3
Ashburner, M.4
-
15
-
-
84874253819
-
Gene Ontology annotations and resources
-
Gene Ontology Consortium.
-
Gene Ontology Consortium. (2013) Gene Ontology annotations and resources. Nucleic Acids Res., 41, D530-D535.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
-
16
-
-
38549093645
-
GDR (Genome Database for Rosaceae): Integrated web-database for Rosaceae genomics and genetics data
-
Jung, S., Staton, M.E., Lee, T., Blenda, A., Svancara, R., Abbott, A.G. and Main, D. (2008) GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data. Nucleic Acids Res., 36, D1034-D1040.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Jung, S.1
Staton, M.E.2
Lee, T.3
Blenda, A.4
Svancara, R.5
Abbott, A.G.6
Main, D.7
-
17
-
-
84891821687
-
KnowPulse: A breeder-focused web portal that integrates genetics and genomics of pulse crops with model genomes
-
January 14-18, 2013, San Diego, CA, USA
-
Sanderson, L.A., Krilow, C., Vandenberg, B., Tom, W., Taran, B. and Bett, K. (2012) KnowPulse: a breeder-focused web portal that integrates genetics and genomics of pulse crops with model genomes. In: Proceedings of the International Plant and Animal Genome Conference: January 14-18, 2013, San Diego, CA, USA.
-
(2012)
Proceedings of the International Plant and Animal Genome Conference
-
-
Sanderson, L.A.1
Krilow, C.2
Vandenberg, B.3
Tom, W.4
Taran, B.5
Bett, K.6
-
18
-
-
84885904157
-
The banana genome hub
-
Oxford
-
Droc, G., Lariviere, D., Guignon, V., Yahiaoui, N., This, D., Garsmeur, O., Dereeper, A., Hamelin, C., Argout, X., Dufayard, J.F. et al. (2013) The banana genome hub. Database (Oxford), 2013, bat035.
-
(2013)
Database
, vol.2013
-
-
Droc, G.1
Lariviere, D.2
Guignon, V.3
Yahiaoui, N.4
This, D.5
Garsmeur, O.6
Dereeper, A.7
Hamelin, C.8
Argout, X.9
Dufayard, J.F.10
-
19
-
-
84891768556
-
Genomic tool development for the fagaceae
-
January 10-14, 2013, San Diego, CA, USA
-
Staton, M.E., Barakat, A.U., Ficklin, S.P., Tomkins, J.P., DiLoreto, D.S. and Carlson, J.E. (2009) Genomic tool development for the fagaceae. In: Proceedings of the International Plant and Animal Genome Conference: January 10-14, 2013, San Diego, CA, USA.
-
(2009)
Proceedings of the International Plant and Animal Genome Conference
-
-
Staton, M.E.1
Barakat, A.U.2
Ficklin, S.P.3
Tomkins, J.P.4
Diloreto, D.S.5
Carlson, J.E.6
-
20
-
-
84891778739
-
Citrus genome database: Updates and new functionality
-
January 14-18, 2013, San Deigo, CA, USA
-
Main, D., Jung, S., Ficklin, S.P., Zheng, P., Cheng, C.-H., Olmstead, M., Abbott, A.G., Blenda, A.V., Lee, T., Chen, C. et al. (2013) Citrus genome database: updates and new functionality. In: Proceedings of the International Plant and Animal Genome Conference: January 14-18, 2013, San Deigo, CA, USA.
-
(2013)
Proceedings of the International Plant and Animal Genome Conference
-
-
Main, D.1
Jung, S.2
Ficklin, S.P.3
Zheng, P.4
Cheng, C.-H.5
Olmstead, M.6
Abbott, A.G.7
Blenda, A.V.8
Lee, T.9
Chen, C.10
-
21
-
-
84891810168
-
A review of the marine genomics project, a web-based genomic and transcriptional database
-
January 10-14, 2013, San Diego, CA, USA
-
Ficklin, S.P., Cook, M.D., Morris, P.J., Gemmill, J.B., Chapman, R.W. and Warr, G.W. (2009) A review of the marine genomics project, a web-based genomic and transcriptional database. In: Proceedings of the International Plant and Animal Genome Conference: January 10-14, 2013, San Diego, CA, USA.
-
(2009)
Proceedings of the International Plant and Animal Genome Conference
-
-
Ficklin, S.P.1
Cook, M.D.2
Morris, P.J.3
Gemmill, J.B.4
Chapman, R.W.5
Warr, G.W.6
-
22
-
-
33644657327
-
A global assembly of cotton ESTs
-
Udall, J.A., Swanson, J.M., Haller, K., Rapp, R.A., Sparks, M.E., Hatfield, J. and Wendel, J.F. (2006) A global assembly of cotton ESTs. Genome Res., 16, 441-450.
-
(2006)
Genome Res.
, vol.16
, pp. 441-450
-
-
Udall, J.A.1
Swanson, J.M.2
Haller, K.3
Rapp, R.A.4
Sparks, M.E.5
Hatfield, J.6
Wendel, J.F.7
-
23
-
-
84885745161
-
Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing
-
Page, J.T., Huynh, M.D., Liechty, Z.S., Grupp, K., Stelly, D., Hulse, A.M., Ashrafi, H., Deynze, A.V., Wendel, J.F. and Udall, J.A. (2013) Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing. G3 (Bethesda), 3, 1809-1818.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 1809-1818
-
-
Page, J.T.1
Huynh, M.D.2
Liechty, Z.S.3
Grupp, K.4
Stelly, D.5
Hulse, A.M.6
Ashrafi, H.7
Deynze, A.V.8
Wendel, J.F.9
Udall, J.A.10
-
24
-
-
84883247341
-
PolyCat: A resource for genome categorization of sequencing reads from allopolyploid organisms
-
Page, J.T., Gingle, A.R. and Udall, J.A. (2013) PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms. G3 (Bethesda), 3, 517-525.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 517-525
-
-
Page, J.T.1
Gingle, A.R.2
Udall, J.A.3
-
25
-
-
18644378331
-
The Generic Genome Browser: A building block for a model organism system database
-
Stein, L.D., Mungall, C., Shu, S.Q., Caudy, M., Mangone, M., Day, A., Nickerson, E., Stajich, J.E., Harris, T.W., Arva, A. et al. (2002) The Generic Genome Browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.Q.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
-
26
-
-
84874724662
-
Update on activities at the Universal Protein Resource (UniProt) in 2013
-
Uniprot Consortium.
-
Uniprot Consortium. (2013) Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res., 41, D43-D47.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
-
27
-
-
84876532610
-
Database resources of the National Center for Biotechnology Information
-
NCBI Resources Coordinators.
-
NCBI Resources Coordinators. (2013) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 41, D8-D20.
-
(2013)
Nucleic Acids Res.
, vol.41
-
-
-
28
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular datasets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular datasets. Nucleic Acids Res., 40, D109-D114.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
29
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang, X. and Madan, A. (1999) CAP3: a DNA sequence assembly program. Genome Res., 9, 868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
30
-
-
84862234802
-
The Arabidopsis Information Resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P., Berardini, T.Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., Muller, R., Dreher, K., Alexander, D.L., Garcia-Hernandez, M. et al. (2011) The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res., 40, D1202-D1210.
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Lamesch, P.1
Berardini, T.Z.2
Li, D.3
Swarbreck, D.4
Wilks, C.5
Sasidharan, R.6
Muller, R.7
Dreher, K.8
Alexander, D.L.9
Garcia-Hernandez, M.10
-
31
-
-
70449353650
-
CMap 1.01: A comparative mapping application for the Internet
-
Youens-Clark, K., Faga, B., Yap, I.V., Stein, L. and Ware, D. (2009) CMap 1.01: a comparative mapping application for the Internet. Bioinformatics, 25, 3040-3042.
-
(2009)
Bioinformatics
, vol.25
, pp. 3040-3042
-
-
Youens-Clark, K.1
Faga, B.2
Yap, I.V.3
Stein, L.4
Ware, D.5
-
32
-
-
71449090366
-
Taxonomic information on cultivated plants in the USDA/ARS germplasm resources information network (GRIN)
-
Tukey, Jr.H.B. (ed.) 10-14 August 1994, Seattle, Washington, USA. Leuven, Belgium
-
Wiersema, J.H. (1994) Taxonomic information on cultivated plants in the USDA/ARS germplasm resources information network (GRIN). In: Tukey, H.B. Jr (ed.), Acta Horticulturae 413. International Society for Horticultural Science. Proceedings of the Second International Symposium on the Taxonomy of Cultivated Plants, 10-14 August 1994, Seattle, Washington, USA. Leuven, Belgium.
-
(1994)
Acta Horticulturae 413. International Society for Horticultural Science. Proceedings of the Second International Symposium on the Taxonomy of Cultivated Plants
-
-
Wiersema, J.H.1
-
33
-
-
77956969931
-
Using the Generic Synteny Browser (GBrowse-syn)
-
Chapter 9, Unit 9.12
-
McKay, S.J., Vergara, I.A. and Stajich, J.E. (2010) Using the Generic Synteny Browser (GBrowse-syn). Curr. Protoc. Bioinformatics, Chapter 9, Unit 9.12.
-
(2010)
Curr. Protoc. Bioinformatics
-
-
McKay, S.J.1
Vergara, I.A.2
Stajich, J.E.3
|