-
1
-
-
0038643475
-
Plant introductions, hybridization and gene flow
-
Abbott RJ, James JK, Milne RI, Gillies ACM. 2003. Plant introductions, hybridization and gene flow. Philos Trans R Soc Lond B Biol Sci. 358: 1123-1132.
-
(2003)
Philos Trans R Soc Lond B Biol Sci.
, vol.358
, pp. 1123-1132
-
-
Abbott, R.J.1
James, J.K.2
Milne, R.I.3
Gillies, A.C.M.4
-
2
-
-
34250674565
-
Evolution of duplicate gene expression in polyploid and hybrid plants
-
Adams KL. 2007. Evolution of duplicate gene expression in polyploid and hybrid plants. J Hered. 98:136-141.
-
(2007)
J Hered.
, vol.98
, pp. 136-141
-
-
Adams, K.L.1
-
3
-
-
0347388385
-
Hybridization, polyploidy and speciation in Spartina (Poaceae)
-
Ainouche ML, Baumel A, Salmon A, Yannic G. 2003. Hybridization, polyploidy and speciation in Spartina (Poaceae). New Phytol. 161: 165-172.
-
(2003)
New Phytol.
, vol.161
, pp. 165-172
-
-
Ainouche, M.L.1
Baumel, A.2
Salmon, A.3
Yannic, G.4
-
4
-
-
1542752643
-
Transfer and origin of adaptations through natural hybridization: Were Anderson and Stebbins right?
-
Arnold ML. 2004. Transfer and origin of adaptations through natural hybridization: were Anderson and Stebbins right? Plant Cell 16:562-570.
-
(2004)
Plant Cell
, vol.16
, pp. 562-570
-
-
Arnold, M.L.1
-
5
-
-
77955663645
-
Hybrid fitness across time and habitats
-
Arnold ML, Martin NH. 2010. Hybrid fitness across time and habitats. Trends Ecol Evol. 25:530-536.
-
(2010)
Trends Ecol Evol.
, vol.25
, pp. 530-536
-
-
Arnold, M.L.1
Martin, N.H.2
-
6
-
-
13744261166
-
Non-additive gene expression in diploid and triploid hybrids of maize
-
Auger DL, et al. 2005. Non-additive gene expression in diploid and triploid hybrids of maize. Genetics 169:389-397.
-
(2005)
Genetics
, vol.169
, pp. 389-397
-
-
Auger, D.L.1
-
7
-
-
78650560030
-
EvoPipes.net: Bioinformatic tools for ecological and evolutionary genomics
-
Barker MS, et al. 2010. EvoPipes.net: bioinformatic tools for ecological and evolutionary genomics. Evol Bioinf. 6:143-149.
-
(2010)
Evol Bioinf.
, vol.6
, pp. 143-149
-
-
Barker, M.S.1
-
9
-
-
77950949952
-
The gene balance hypothesis: Implications for gene regulation, quantitative traits, and evolution
-
Birchler JA, Veitia RA. 2010. The gene balance hypothesis: implications for gene regulation, quantitative traits, and evolution. New Phytol. 186: 54-62.
-
(2010)
New Phytol.
, vol.186
, pp. 54-62
-
-
Birchler, J.A.1
Veitia, R.A.2
-
10
-
-
77956795823
-
Heterosis
-
Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. 2010. Heterosis. Plant Cell 22:2105-2112.
-
(2010)
Plant Cell
, vol.22
, pp. 2105-2112
-
-
Birchler, J.A.1
Yao, H.2
Chudalayandi, S.3
Vaiman, D.4
Veitia, R.A.5
-
11
-
-
18244402870
-
Phenotypic and genetic differentiation between native and introduced plant populations
-
Bossdorf O, et al. 2005. Phenotypic and genetic differentiation between native and introduced plant populations. Oecologia 144:1-11.
-
(2005)
Oecologia
, vol.144
, pp. 1-11
-
-
Bossdorf, O.1
-
12
-
-
58349111875
-
AmiGO: Online access to ontology and annotation data
-
Carbon S, et al. 2009. AmiGO: online access to ontology and annotation data. Bioinformatics 25:288-289.
-
(2009)
Bioinformatics
, vol.25
, pp. 288-289
-
-
Carbon, S.1
-
13
-
-
49749111448
-
Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast
-
Chang YW, et al. 2008. Roles of cis- and trans-changes in the regulatory evolution of genes in the gluconeogenic pathway in yeast. Mol Biol Evol. 25:1863-1875.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 1863-1875
-
-
Chang, Y.W.1
-
14
-
-
33748063645
-
Potential model weeds to study genomics, ecology, and physiology in the 21st century
-
Chao WS, Horvath DP, Anderson JV, Foley MP. 2005. Potential model weeds to study genomics, ecology, and physiology in the 21st century. Weed Sci. 53:929-937.
-
(2005)
Weed Sci.
, vol.53
, pp. 929-937
-
-
Chao, W.S.1
Horvath, D.P.2
Anderson, J.V.3
Foley, M.P.4
-
15
-
-
38049141178
-
An optimized procedure greatly improves EST vector contamination removal
-
Chen Y, Lin C, Wang C, Wu H, Hwang P. 2007. An optimized procedure greatly improves EST vector contamination removal. BMCGenomics 8: 416.
-
(2007)
BMCGenomics
, vol.8
, pp. 416
-
-
Chen, Y.1
Lin, C.2
Wang, C.3
Wu, H.4
Hwang, P.5
-
16
-
-
75949117260
-
Molecular mechanisms of polyploidy and hybrid vigor
-
Chen ZJ. 2010. Molecular mechanisms of polyploidy and hybrid vigor. Trends Plant Sci. 15:57-71.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 57-71
-
-
Chen, Z.J.1
-
17
-
-
3042615882
-
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs
-
Chevreux B, et al. 2004. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs. Genome Res. 14:1147-1159.
-
(2004)
Genome Res.
, vol.14
, pp. 1147-1159
-
-
Chevreux, B.1
-
18
-
-
58849107237
-
Transcriptome content and dynamics at single-nucleotide resolution
-
Cloonan N, Grimmond SM. 2008. Transcriptome content and dynamics at single-nucleotide resolution. Genome Biol. 9:234.
-
(2008)
Genome Biol.
, vol.9
, pp. 234
-
-
Cloonan, N.1
Grimmond, S.M.2
-
19
-
-
0347127843
-
-
Madison (WI): American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America
-
Coors JG, Pandey S. 1999. The genetics and exploitation of heterosis in crops. Madison (WI): American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America.
-
(1999)
The Genetics and Exploitation of Heterosis in Crops
-
-
Coors, J.G.1
Pandey, S.2
-
21
-
-
85101890420
-
Dominance and overdominance
-
Coors JG, Pandey S, editors. Madison (WI): American Society of Agronomy
-
Crow JF. 1999. Dominance and overdominance. In: Coors JG, Pandey S, editors. The genetics and exploitation of heterosis in crops. Madison (WI): American Society of Agronomy. p. 49-58.
-
(1999)
The Genetics and Exploitation of Heterosis in Crops
, pp. 49-58
-
-
Crow, J.F.1
-
22
-
-
37349067917
-
Founding events in species invasions: Genetic variation, adaptive evolution, and the role of multiple introductions
-
Dlugosch KM, Parker IM. 2008. Founding events in species invasions: genetic variation, adaptive evolution, and the role of multiple introductions. Mol Ecol. 17:431-449.
-
(2008)
Mol Ecol.
, vol.17
, pp. 431-449
-
-
Dlugosch, K.M.1
Parker, I.M.2
-
23
-
-
85101895806
-
Heterosis: Feeding people and protecting natural resources
-
Coors JG, Pandey S, editors. Madison (WI): American Society of Agronomy/ Crop Science Society of America
-
Duvick DN. 1999. Heterosis: feeding people and protecting natural resources. In: Coors JG, Pandey S, editors. Genetics and exploitation of heterosis in crops. Madison (WI): American Society of Agronomy/ Crop Science Society of America. p. 19-29.
-
(1999)
Genetics and Exploitation of Heterosis in Crops
, pp. 19-29
-
-
Duvick, D.N.1
-
24
-
-
0034691125
-
Hybridization as a stimulus for the evolution of invasiveness in plants?
-
Ellstrand NC, Schierenbeck KA. 2000. Hybridization as a stimulus for the evolution of invasiveness in plants? Proc Natl Acad Sci U S A. 97: 7043-7050.
-
(2000)
Proc Natl Acad Sci U S A.
, vol.97
, pp. 7043-7050
-
-
Ellstrand, N.C.1
Schierenbeck, K.A.2
-
25
-
-
77952982347
-
Natural selection on cis and trans regulation in yeasts
-
Emerson JJ, et al. 2010. Natural selection on cis and trans regulation in yeasts. Genome Res. 20:826-836.
-
(2010)
Genome Res.
, vol.20
, pp. 826-836
-
-
Emerson, J.J.1
-
26
-
-
77956494602
-
The genetic basis of evolutionary change in gene expression levels
-
Emerson JJ, Li W-H. 2010. The genetic basis of evolutionary change in gene expression levels. Philos Trans R Soc Lond B Biol Sci. 365: 2581-2590.
-
(2010)
Philos Trans R Soc Lond B Biol Sci.
, vol.365
, pp. 2581-2590
-
-
Emerson, J.J.1
Li, W.-H.2
-
27
-
-
77951902699
-
Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing
-
Fontanillas P, et al. 2010. Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing. Mol Ecol. 19:212-227.
-
(2010)
Mol Ecol.
, vol.19
, pp. 212-227
-
-
Fontanillas, P.1
-
28
-
-
33745055137
-
High genetic diversity in French invasive populations of common ragweed, Ambrosia artemisiifolia, as a result of multiple sources of introduction
-
Genton BJ, Shykoff JA, Giraud T. 2005. High genetic diversity in French invasive populations of common ragweed, Ambrosia artemisiifolia, as a result of multiple sources of introduction. Mol Ecol. 14: 4275-4285.
-
(2005)
Mol Ecol.
, vol.14
, pp. 4275-4285
-
-
Genton, B.J.1
Shykoff, J.A.2
Giraud, T.3
-
29
-
-
4644370178
-
Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster
-
Gibson G, et al. 2004. Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167:1791-1799.
-
(2004)
Genetics
, vol.167
, pp. 1791-1799
-
-
Gibson, G.1
-
30
-
-
13444304173
-
Chance caught on the wing: Cis-regulatory evolution and the origin of pigment patterns in Drosophila
-
Gompel N, Prud'homme B, Wittkopp PJ, Kassner VA, Carroll SB. 2005. Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. Nature 433:481-487.
-
(2005)
Nature
, vol.433
, pp. 481-487
-
-
Gompel, N.1
Prud'homme, B.2
Wittkopp, P.J.3
Kassner, V.A.4
Carroll, S.B.5
-
31
-
-
3142750575
-
Allelic variation of gene expression in maize hybrids
-
Guo M, et al. 2004. Allelic variation of gene expression in maize hybrids. Plant Cell 16:1707-1716.
-
(2004)
Plant Cell
, vol.16
, pp. 1707-1716
-
-
Guo, M.1
-
32
-
-
42149163447
-
Genome-wide allele-specific expression analysis using massively parallel signature sequencing (MPSS) reveals cis- and transeffects on gene expression in maize hybrid meristem tissue
-
Guo M, et al. 2008. Genome-wide allele-specific expression analysis using massively parallel signature sequencing (MPSS) reveals cis- and transeffects on gene expression in maize hybrid meristem tissue. Plant Mol Biol. 66:551-563.
-
(2008)
Plant Mol Biol.
, vol.66
, pp. 551-563
-
-
Guo, M.1
-
33
-
-
70649107892
-
Regulatory divergence in Drosophila melanogaster and D. Simulans, a genomewide analysis of allele-specific expression
-
Graze RM, McIntyre LM, Main BJ, Wayne ML, Nuzhdin SV. 2009. Regulatory divergence in Drosophila melanogaster and D. simulans, a genomewide analysis of allele-specific expression. Genetics 183: 547-561.
-
(2009)
Genetics
, vol.183
, pp. 547-561
-
-
Graze, R.M.1
McIntyre, L.M.2
Main, B.J.3
Wayne, M.L.4
Nuzhdin, S.V.5
-
34
-
-
62449248382
-
Cis-regulatory variation is typically polyallelic in Drosophila
-
Gruber JD, Long AD. 2008. Cis-regulatory variation is typically polyallelic in Drosophila. Genetics 181:661-670.
-
(2008)
Genetics
, vol.181
, pp. 661-670
-
-
Gruber, J.D.1
Long, A.D.2
-
35
-
-
33747161960
-
Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication
-
Hegarty MJ, et al. 2006. Transcriptome shock after interspecific hybridization in Senecio is ameliorated by genome duplication. Curr Biol. 16: 1652-1659.
-
(2006)
Curr Biol.
, vol.16
, pp. 1652-1659
-
-
Hegarty, M.J.1
-
36
-
-
77950346035
-
Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids
-
He G, et al. 2010. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. Plant Cell 22:17-33.
-
(2010)
Plant Cell
, vol.22
, pp. 17-33
-
-
He, G.1
-
37
-
-
38749149152
-
Whole-genome sequencing and variant discovery in C. Elegans
-
Hillier LW, et al. 2008. Whole-genome sequencing and variant discovery in C. elegans. Nat Methods. 5:183-188.
-
(2008)
Nat Methods
, vol.5
, pp. 183-188
-
-
Hillier, L.W.1
-
38
-
-
34548395815
-
Towards the molecular basis of heterosis
-
Hochholdinger F, Hoecker N. 2007. Towards the molecular basis of heterosis. Trends Plant Sci. 12:1360-1385.
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 1360-1385
-
-
Hochholdinger, F.1
Hoecker, N.2
-
39
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
Hoekstra HE, Coyne JA. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016.
-
(2007)
Evolution
, vol.61
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
40
-
-
0032849859
-
CAP3: A DNA sequence assembly program
-
Huang X, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Res. 9:868-877.
-
(1999)
Genome Res.
, vol.9
, pp. 868-877
-
-
Huang, X.1
Madan, A.2
-
41
-
-
33750488136
-
Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs
-
Huang Y, et al. 2006. Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs. Plant Mol Biol. 62:579-591.
-
(2006)
Plant Mol Biol.
, vol.62
, pp. 579-591
-
-
Huang, Y.1
-
42
-
-
36248998803
-
Testing the role of genetic factors across multiple independent invasions of the shrub Scotch broom (Cytisus scoparius)
-
Kang M, Buckley YM, Lowe AJ. 2007. Testing the role of genetic factors across multiple independent invasions of the shrub Scotch broom (Cytisus scoparius). Mol Ecol. 16:4662-4673.
-
(2007)
Mol Ecol.
, vol.16
, pp. 4662-4673
-
-
Kang, M.1
Buckley, Y.M.2
Lowe, A.J.3
-
43
-
-
84863338264
-
Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
-
Lai Z, et al. 2012. Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am J Bot. 99:209-218.
-
(2012)
Am J Bot.
, vol.99
, pp. 209-218
-
-
Lai, Z.1
-
44
-
-
33645131133
-
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila
-
Landry CR, et al. 2005. Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila. Genetics 171:1813-1822.
-
(2005)
Genetics
, vol.171
, pp. 1813-1822
-
-
Landry, C.R.1
-
45
-
-
35548955944
-
Genome clashes in hybrids: Insights from gene expression
-
Landry CR, Hartl DL, Ranz JM. 2007. Genome clashes in hybrids: insights from gene expression. Heredity 99:483-493.
-
(2007)
Heredity
, vol.99
, pp. 483-493
-
-
Landry, C.R.1
Hartl, D.L.2
Ranz, J.M.3
-
46
-
-
70350669879
-
TagDust - A program to eliminate artifacts from next generation sequencing data
-
Lassman T, Hayashizaki Y, Daub CO. 2009. TagDust - a program to eliminate artifacts from next generation sequencing data. Bioinformatics 25:2839-2840.
-
(2009)
Bioinformatics
, vol.25
, pp. 2839-2840
-
-
Lassman, T.1
Hayashizaki, Y.2
Daub, C.O.3
-
47
-
-
54149089108
-
Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression
-
Lemos B, Araripe LO, Fontanillas P, Hartl DL. 2008. Dominance and the evolutionary accumulation of cis- and trans-effects on gene expression. Proc Natl Acad Sci U S A. 105:14471-14476.
-
(2008)
Proc Natl Acad Sci U S A.
, vol.105
, pp. 14471-14476
-
-
Lemos, B.1
Araripe, L.O.2
Fontanillas, P.3
Hartl, D.L.4
-
48
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, et al. 2009. The sequence alignment/map format and SAMtools. Bioinformatics 25:2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
49
-
-
50649089207
-
RNA-Seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. 2008. RNA-Seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res. 18:1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
50
-
-
77953010033
-
Regulatory divergence in Drosophila revealed by mRNA-seq
-
McManus CJ, et al. 2010. Regulatory divergence in Drosophila revealed by mRNA-seq. Genome Res. 20:816-825.
-
(2010)
Genome Res.
, vol.20
, pp. 816-825
-
-
McManus, C.J.1
-
51
-
-
7444235907
-
Cis-acting regulatory variation in the human genome
-
Pastinen T, Hudson TJ. 2004. Cis-acting regulatory variation in the human genome. Science 306:647-650.
-
(2004)
Science
, vol.306
, pp. 647-650
-
-
Pastinen, T.1
Hudson, T.J.2
-
52
-
-
44649196460
-
Adaptive evolution in invasive species
-
Prentis PJ, Wilson JRU, Dormontt EE, Richardson DM, Lowe AJ. 2008. Adaptive evolution in invasive species. Trends Plant Sci. 13: 288-294.
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 288-294
-
-
Prentis, P.J.1
Wilson, J.R.U.2
Dormontt, E.E.3
Richardson, D.M.4
Lowe, A.J.5
-
53
-
-
33646191543
-
Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
-
Prud'homme B, et al. 2006. Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene. Nature 440: 1050-1053.
-
(2006)
Nature
, vol.440
, pp. 1050-1053
-
-
Prud'homme, B.1
-
55
-
-
1542316920
-
Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans
-
Ranz JM, Namgyal K, Gibson G, Hartl DL. 2004. Anomalies in the expression profile of interspecific hybrids of Drosophila melanogaster and Drosophila simulans. Genome Res. 14:373-379.
-
(2004)
Genome Res.
, vol.14
, pp. 373-379
-
-
Ranz, J.M.1
Namgyal, K.2
Gibson, G.3
Hartl, D.L.4
-
56
-
-
0031465850
-
Hybrid origins of plant species
-
Rieseberg LH. 1997. Hybrid origins of plant species. Annu Rev Ecol Syst. 28: 359-389.
-
(1997)
Annu Rev Ecol Syst.
, vol.28
, pp. 359-389
-
-
Rieseberg, L.H.1
-
57
-
-
0032755574
-
Transgressive segregation, adaptation, and speciation
-
Rieseberg LH, Archer MA, Wayne RK. 1999. Transgressive segregation, adaptation, and speciation. Heredity 83:363-372.
-
(1999)
Heredity
, vol.83
, pp. 363-372
-
-
Rieseberg, L.H.1
Archer, M.A.2
Wayne, R.K.3
-
58
-
-
0042178293
-
Major ecological transitions in annual sunflowers facilitated by hybridization
-
Rieseberg LH, et al. 2003. Major ecological transitions in annual sunflowers facilitated by hybridization. Science 301:1211-1216.
-
(2003)
Science
, vol.301
, pp. 1211-1216
-
-
Rieseberg, L.H.1
-
59
-
-
33846115537
-
Hybridization and the colonization of novel habitats by annual sunflowers
-
Rieseberg LH, et al. 2007. Hybridization and the colonization of novel habitats by annual sunflowers. Genetica 129:149-165.
-
(2007)
Genetica
, vol.129
, pp. 149-165
-
-
Rieseberg, L.H.1
-
60
-
-
0038304502
-
The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations
-
Rieseberg LH, Widmer A, Arntz AM, Burke JM. 2003. The genetic architecture necessary for transgressive segregation is common in both natural and domesticated populations. Philos Trans R Soc Lond B Biol Sci. 358:1141-1147.
-
(2003)
Philos Trans R Soc Lond B Biol Sci.
, vol.358
, pp. 1141-1147
-
-
Rieseberg, L.H.1
Widmer, A.2
Arntz, A.M.3
Burke, J.M.4
-
61
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
Robinson MD, Smyth GK. 2007. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 23:2881-2887.
-
(2007)
Bioinformatics
, vol.23
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
62
-
-
70649114601
-
Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana
-
Schwartz C, et al. 2009. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics 183:723-732.
-
(2009)
Genetics
, vol.183
, pp. 723-732
-
-
Schwartz, C.1
-
63
-
-
40149090710
-
Differential allelic expression in the human genome: A robust approach to identify genetic and epigenetic cisacting mechanisms regulating gene expression
-
Serre D, et al. 2008. Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cisacting mechanisms regulating gene expression. PLoS Genet. 4: e1000006.
-
(2008)
PLoS Genet.
, vol.4
-
-
Serre, D.1
-
64
-
-
0042307299
-
Gene expression of a gene family in maize based on noncollinear haplotypes
-
Song R, Messing J. 2003. Gene expression of a gene family in maize based on noncollinear haplotypes. Proc Natl Acad Sci U S A. 100: 9055-9060.
-
(2003)
Proc Natl Acad Sci U S A.
, vol.100
, pp. 9055-9060
-
-
Song, R.1
Messing, J.2
-
65
-
-
35348906821
-
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid Maize
-
Springer NM, Stupar RM. 2007. Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid Maize. Plant Cell. 19 2391-2402.
-
(2007)
Plant Cell
, vol.19
, pp. 2391-2402
-
-
Springer, N.M.1
Stupar, R.M.2
-
67
-
-
51249106485
-
The loci of evolution: How predictable is genetic evolution?
-
Stern DL, Orgogozo V. 2008. The loci of evolution: how predictable is genetic evolution? Evolution 62:2155-2177.
-
(2008)
Evolution
, vol.62
, pp. 2155-2177
-
-
Stern, D.L.1
Orgogozo, V.2
-
68
-
-
77749304523
-
Evolution of weediness and invasiveness: Charting the course for weed genomics
-
Stewart NC, et al. 2009. Evolution of weediness and invasiveness: charting the course for weed genomics. Weed Sci. 57:451-462.
-
(2009)
Weed Sci.
, vol.57
, pp. 451-462
-
-
Stewart, N.C.1
-
69
-
-
1142273091
-
Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: A unified approach
-
Storey JD, Taylor JE, Siegmund D. 2004. Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: a unified approach. J R Stat Soc Ser B. 66: 187-205.
-
(2004)
J R Stat Soc ser B.
, vol.66
, pp. 187-205
-
-
Storey, J.D.1
Taylor, J.E.2
Siegmund, D.3
-
70
-
-
0042424602
-
Statistical significance for genome-wide studies
-
Storey JD, Tibshirani R. 2003. Statistical significance for genome-wide studies. Proc Natl Acad Sci U S A. 100:9440-9445.
-
(2003)
Proc Natl Acad Sci U S A.
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
71
-
-
73349095713
-
Roles of trans and cis variation in yeast intraspecific evolution of gene expression
-
Sung HM, et al. 2009. Roles of trans and cis variation in yeast intraspecific evolution of gene expression. Mol Biol Evol. 26:2533-2538.
-
(2009)
Mol Biol Evol.
, vol.26
, pp. 2533-2538
-
-
Sung, H.M.1
-
73
-
-
0033858908
-
Evolution of transcriptional regulation
-
Tautz D. 2000. Evolution of transcriptional regulation. Curr Opin Genet Dev. 10:575-579.
-
(2000)
Curr Opin Genet Dev.
, vol.10
, pp. 575-579
-
-
Tautz, D.1
-
74
-
-
65549086559
-
A yeast hybrid provides insight into the evolution of gene expression regulation
-
Tirosh I, Reikhav S, Levy AA, Barkai N. 2009. A yeast hybrid provides insight into the evolution of gene expression regulation. Science 324: 659-662.
-
(2009)
Science
, vol.324
, pp. 659-662
-
-
Tirosh, I.1
Reikhav, S.2
Levy, A.A.3
Barkai, N.4
-
75
-
-
32544437127
-
Genetic analysis of variation in gene expression in Arabidopsis thaliana
-
Vuylsteke M, van Eeuwijk F, Van Hummelen P, Kuiper M, Zabeau M. 2005. Genetic analysis of variation in gene expression in Arabidopsis thaliana. Genetics 171:1267-1275.
-
(2005)
Genetics
, vol.171
, pp. 1267-1275
-
-
Vuylsteke, M.1
Van Eeuwijk, F.2
Van Hummelen, P.3
Kuiper, M.4
Zabeau, M.5
-
76
-
-
33745402347
-
Nonadditive regulation of FRI and FLC loci mediates flowering-time variation in Arabidopsis allopolyploids
-
Wang J, Tian L, Lee H, Chen ZJ. 2006. Nonadditive regulation of FRI and FLC loci mediates flowering-time variation in Arabidopsis allopolyploids. Genetics 173:965-974.
-
(2006)
Genetics
, vol.173
, pp. 965-974
-
-
Wang, J.1
Tian, L.2
Lee, H.3
Chen, Z.J.4
-
77
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. 2008. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 10:57-63.
-
(2008)
Nat Rev Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
79
-
-
3042722019
-
Evolutionary changes in cis and trans gene regulation
-
Wittkopp PJ, Haerum BK, Clark AG. 2004. Evolutionary changes in cis and trans gene regulation. Nature 430:85-88.
-
(2004)
Nature
, vol.430
, pp. 85-88
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
80
-
-
39749116219
-
Regulatory changes underlying expression differences within and between Drosophila species
-
Wittkopp PJ, Haerum BK, Clark AG. 2008a. Regulatory changes underlying expression differences within and between Drosophila species. Nat Genet. 40:346-350.
-
(2008)
Nat Genet.
, vol.40
, pp. 346-350
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
81
-
-
45149120891
-
Independent effects of cisand trans-regulatory variation on gene expression in Drosophila melanogaster
-
Wittkopp PJ, Haerum BK, Clark AG. 2008b. Independent effects of cisand trans-regulatory variation on gene expression in Drosophila melanogaster. Genetics 178:1831-1835.
-
(2008)
Genetics
, vol.178
, pp. 1831-1835
-
-
Wittkopp, P.J.1
Haerum, B.K.2
Clark, A.G.3
-
82
-
-
33847057226
-
The evolutionary significance of cis-regulatory mutations
-
Wray GA. 2007. The evolutionary significance of cis-regulatory mutations. Nat Rev Gen. 8:206-216.
-
(2007)
Nat Rev Gen.
, vol.8
, pp. 206-216
-
-
Wray, G.A.1
-
83
-
-
77952509586
-
Genetic and molecular bases of rice yield
-
Xing Y, Zhang Q. 2010. Genetic and molecular bases of rice yield. Annu Rev Plant Biol. 61:421-442.
-
(2010)
Annu Rev Plant Biol.
, vol.61
, pp. 421-442
-
-
Xing, Y.1
Zhang, Q.2
-
84
-
-
70350142925
-
Global analysis of allele-specific expression in Arabidopsis thaliana
-
Zhang X, Borevitz JO. 2009. Global analysis of allele-specific expression in Arabidopsis thaliana. Genetics 182:943-954.
-
(2009)
Genetics
, vol.182
, pp. 943-954
-
-
Zhang, X.1
Borevitz, J.O.2
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