GigaDB: Announcing the GigaScience database

GigaScience

Volumn 1, Issue 1, 2012, Pages

  Sneddon, Tam P ^a   Li, Peter ^a   Edmunds, Scott C ^a  

^a GigaScience   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

CLINICAL DATA REPOSITORY; DATA ANALYSIS SOFTWARE; DATA BASE; EDITORIAL; EPIGENETICS; GENETIC DATABASE; GIGADB; HUMAN; INFORMATION PROCESSING; INTERNET; LIVER CELL CARCINOMA; METAGENOMICS; NONHUMAN; PRACTICE GUIDELINE; PRIORITY JOURNAL; REPRODUCIBILITY; SEQUENCE DATABASE;

EID: 84891658571     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1186/2047-217X-1-11     Document Type: Editorial

References (11)

1. Isn't it semantic http://www.ecs.soton.ac.uk/about/berners-lee.php
2. Wilson GA, Dhami P, Feber A, Cortázar D, Suzuki Y, Schulz R, Schär P, Beck S. Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers. GigaScience 2012, 1:3.
3. Wilson G, Dharmi P, Saito Y, Cortázar D, Kunz C, Schär P, Beck S. Resources for the MeDUSA (Methylated DNA Utility for Sequence Analysis) MeDIP-seq computational analysis pipeline for the identification of differentially methylated regions, and associated methylome data from 18 wild-type and mutant mouse ES, NP and MEF cells. GigaScience 2012, http://dx.doi.org/10.5524/100035
4. Hayden EC. Open-data project aims to ease the way for genomic research. Nature 2012, http://dx.doi.org/10.1038/nature.2012.10507
5. Schatz MC, Phillippy AM. The rise of a digital immune system. GigaScience 2012, 1:4.
6. Rohde H, Qin J, Cui Y, Li D, Nicholas ME, Loman J, Hentschke M, Chen W, Pu F, Peng Y, Li J, Xi F, Li S, Li Y, Zhang Z, Yang X, Zhao M, Wang P, Guan Y, Cen Z, Zhao X, Christner M, Kobbe R, Loos S, Oh J, Yang L, Danchin A, Gao GF, Song Y, Li Y, Yang H, Wang J, Xu J, Pallen MJ, Wang J, Aepfelbacher M, Yang R. the E. coli O104:H4 Genome Analysis Crowd-Sourcing Consortium: Open-Source Genomic Analysis of Shiga-Toxin-ProducingE. coliO104:H4. N Engl J Med 2011, 365:718-724. 10.1056/NEJMoa1107643, 21793736.
7. Edmunds SC, Pollard TJ, Hole B, Basford A. Adventures in data citation: sorghum genome data exemplifies the new gold standard. BMC Res Notes 2012, 5:223. 10.1186/1756-0500-5-223, 3392744, 22571506.
8. Zheng L-Y, Guo X-S, He B, Sun L-J, Peng Y, Dong S-S, Liu T-F, Jiang S, Ramachandran S, Liu C-M, Jing H-C. Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor). Genome Biol 2011, 12:R114. 10.1186/gb-2011-12-11-r114, 3334600, 22104744.
9. Kan Z, Zheng H, Liu X, Li S, Barber TD, Gong Z, Gao H, Hao K, Willard MD, Xu J, Hauptschein R, Rejto PA, Fernandez J, Wang G, Zhang Q, Wang B, Chen R, Wang J, Lee NP, Lee WH, Ariyaratne PN, Tennakoon C, Mulawadi FH, Wong KF, Liu AM, Chan KL, Hu Y, Chou WC, Buser C, Zhou W, Lin Z, Peng Z, Yi K, Chen S, Li L, Fan X, Yang J, Ye R, Ju J, Wang K, Estrella H, Deng S, Wulur IH, Liu J, Ehsani ME, Zhang C, Loboda A, Sung WK, Aggarwal A, Poon RT, Fan ST, Wang J, Hardwick J, Reinhard C, Dai H, Li Y, Luk JM, Mao M, The Asian Cancer Research Group Hepatocellular carcinoma genomic data from the Asia Cancer Research Group. GigaScience. 2012, The Asian Cancer Research Group., http://dx.doi.org/10.5524/100034
10. Sansone SA, Rocca-Serra P, Field D, Maguire E, Taylor C, Hofmann O, Fang H, Neumann S, Tong W, Amaral-Zettler L, Begley K, Booth T, Bougueleret L, Burns G, Chapman B, Clark T, Coleman LA, Copeland J, Das S, de Daruvar A, de Matos P, Dix I, Edmunds S, Evelo CT, Forster MJ, Gaudet P, Gilbert J, Goble C, Griffin JL, Jacob D, Kleinjans J, Harland L, Haug K, Hermjakob H, Ho Sui SJ, Laederach A, Liang S, Marshall S, McGrath A, Merrill E, Reilly D, Roux M, Shamu CE, Shang CA, Steinbeck C, Trefethen A, Williams-Jones B, Wolstencroft K, Xenarios I, Hide W. Toward interoperable bioscience data. Nat Genet 2012, 44(2):121-126. 10.1038/ng.1054, 22281772.
11. Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V. Repeatability of published microarray gene expression analyses. Nature Gen. 2009, 41(2):149-155.