Bacterial communities in a bioelectrochemical denitrification system: The effects of supplemental electron acceptors

Water Research

Volumn 51, Issue , 2014, Pages 25-36

  Kondaveeti, Sanath ^a   Lee, Sang Hoon ^b   Park, Hee Deung ^b   Min, Booki ^a  

^a Kyung Hee University   (South Korea)

^b Korea University   (South Korea)

Author keywords

Biocathode; Bioelectrochemical system; Denitrification; Nitrate; Pyrosequencing

Indexed keywords

CATHODES; ELECTRONS; FORESTRY; MICROORGANISMS; MIXTURES; NITRATES; NITROGEN OXIDES; NITROGEN REMOVAL;

BACTERIAL DIVERSITY; BIO-ELECTROCHEMICAL SYSTEMS; BIOCATHODES; ELECTROCHEMICAL TREATMENTS; MICROBIAL COMMUNITIES; MICROBIAL COMMUNITY COMPOSITION; PYROSEQUENCING; SIMULTANEOUS REDUCTION;

DENITRIFICATION;

NITRATE; NITRITE; NITROGEN;

BACTERIUM; BIOFILM; DENITRIFICATION; ELECTROCHEMICAL METHOD; ELECTRODE; ELECTRON; MICROBIAL COMMUNITY; NITRATE; NITRITE; NITROGEN DIOXIDE; POLLUTANT REMOVAL;

ARTICLE; BIOCATALYST; BIOELECTROCHEMICAL DENITRIFICATION SYSTEM; BIOFILM; CONTROLLED STUDY; DENITRIFICATION; ELECTROCHEMICAL ANALYSIS; ELECTRON; FIRMICUTES; INOCULATION; INTERMETHOD COMPARISON; MICROBIAL BIOMASS; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEOBACTERIA; REDUCTION KINETICS; SLUDGE; WASTE COMPONENT REMOVAL;

BIOCATHODE; BIOELECTROCHEMICAL SYSTEM; DENITRIFICATION; NITRATE; PYROSEQUENCING;

BACTEROIDETES; BASE SEQUENCE; BIOREACTORS; DENITRIFICATION; DNA PRIMERS; ELECTROCHEMICAL TECHNIQUES; ELECTRONS; MICROBIOTA; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; NITRATES; NITRITES; OXIDATION-REDUCTION; PHYLOGENY; PRINCIPAL COMPONENT ANALYSIS; PROTEOBACTERIA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84891619292     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2013.12.023     Document Type: Article

References (51)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25(17):3389-3402.
2. Altschul S.F., Gertz E.M., Agarwala R., Schaffer A.A., Yu Y.K. PSI-BLAST pseudocounts and the minimum description length principle. Nucleic Acids Res. 2009, 37(3):815-824.
3. Anders H.J., Anette K., Peter K., Wolfgang L., Fuchus A.G. Taxonomic position of aromatic-degrading denitrifying Pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the proteobacteria. Int. J. Syst. Evol. Microbiol. 1995, 45(2):327-333.
4. Anderson R.T., Vrionis H.A., Ortiz-Bernad I., Resch C.T., Long P.E., Dayvault R., Karp K., Marutzky S., Metzler D.R., Peacock A., White D.C., Lowe M., Lovley D.R. Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer. Appl. Environ. Microbiol. 2003, 69(10):5884-5891.
5. Standard Methods for the Examination of Water and Wastewater 2005, APHA, American Public Health Association, Washing ton, DC.
6. Borole A.P., Aaron D., Hamilton C.Y., Tsouris C. Understanding long-term changes in microbial fuel cell performance using electrochemical impedance spectroscopy. Environ. Sci. Technol. 2010, 44(7):2740-2745.
7. Butler C.S., Clauwaert P., Green S.J., Verstraete W., Nerenberg R. Bioelectrochemical perchlorate reduction in a microbial fuel cell. Environ. Sci. Technol. 2010, 44(12):4685-4691.
8. Chebotareva N., Nyokong T. Metallophthalocyanine catalysed electroreduction of nitrate and nitrite ions in alkaline media. J. Appl. Electrochem. 1997, 27(8):975-981.
9. Chen Y., Zhu S.-B., Xie M.-Y., Nie S.-P., Liu W., Li C., Gong X.-F., Wang Y.-X. Quality control and original discrimination of Ganoderma lucidum based on high-performance liquid chromatographic fingerprints and combined chemometrics methods. Anal. Chim. Acta 2008, 623:146-156.
10. Cheng S., Xing D., Call D.F., Logan B.E. Direct biological conversion of electrical current into methane by electromethanogenesis. Environ. Sci. Technol. 2009, 43(10):3953-3958.
11. Cheng K.Y., Ginige M.P., Kaksonen A.H. Ano-cathodophilic biofilm catalyzes both anodic carbon oxidation and cathodic denitrification. Environ. Sci. Technol. 2012, 46(18):10372-10378.
12. Cole J.R., Chai B., Farris R.J., Wang Q., Kulam S.A., McGarrell D.M., Garrity G.M., Tiedje J.M. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 2005, 33(Database issue):294-296.
13. Cole J.R., Wang Q., Cardenas E., Fish J., Chai B., Farris R.J., Kulam-Syed-Mohideen A.S., McGarrell D.M., Marsh T., Garrity G.M., Tiedje J.M. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 2009, 37(Database issue):141-145.
14. Dhamole P.B., Nair R.R., D'Souza S.F., Lele S.S. Denitrification of high strength nitrate waste. Bioresour. Technol. 2007, 98(2):247-252.
15. Hamady Micah, Lozupone Catherine, Knight R. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data. ISME J. 2010, 4(1):17-27.
16. He Z., Mansfeld F. Exploring the use of electrochemical impedance spectroscopy (EIS) in microbial fuel cell studies. Energy Environ. Sci. 2009, 2(2):215-219.
17. Heyrman Jeroen, Vanparys Bram, Logan Niall A., Balcaen An, Rodríguez-Díaz Marina, Felske A., Vos P.D. Bacillus novalis sp. nov., Bacillus vireti sp. nov., Bacillus soli sp. nov., Bacillus bataviensis sp. nov. and Bacillus drentensis sp. nov., from the Drentse A grasslands. Int. J. Syst. Evol. Microbiol. 2004, 54:47-57.
18. Hu H., Fan Y., Liu H. Hydrogen production in single-chamber tubular microbial electrolysis cells using non-precious-metal catalysts. Int. J. Hydr. Energy 2009, 34(20):8535-8542.
19. Huang B., Feng H., Wang M., Li N., Cong Y., Shen D. How to ascertain the importance of autotrophic denitrification process in a bioelectrochemical system. Bioresour. Technol. 2013, 146(0):525-529.
20. Jia Y.-H., Tran H.-T., Kim D.-H., Oh S.-J., Park D.-H., Zhang R.-H., Ahn D.-H. Simultaneous organics removal and bio-electrochemical denitrification in microbial fuel cells. Bioprocess Biosyst. Eng. 2008, 31(4):315-321.
21. Katayama Y., Hiraishi A., Kuraishi H. Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 1995, 141(6):1469-1477.
22. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16(2):111-120.
23. Kondaveeti S., Min B. Nitrate reduction with biotic and abiotic cathodes at various cell voltages in bioelectrochemical denitrification system. Bioprocess Biosyst. Eng. 2013, 36(2):231-238.
24. Kumar S., Nei M., Dudley J., Tamura K. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform. 2008, 9(4):299-306.
25. Kwon S., Kim T.-S., Yu G.-H., Jung J.-H., Park H.-D. Bacterial community composition and diversity of a full-scale integrated fixed-film activated sludge system as investigated by pyrosequencing. J. Microbiol. Biotechnol. 2010, 20(12):1717-1723.
26. Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. John Wiley and Sons, New York, NY. E. Stackebrandt, M. Goodfellow (Eds.).
27. Lee S.-H., Park J.-H., Kang H.-J., Lee Y.H., Lee T.J., Park H.-D. Distribution and abundance of spirochaetes in full-scale anaerobic digesters. Bioresour. Technol 2013, 145:25-32.
28. Li H.-B., Zhang L.-P., Chen S.-F. Halomonas korlensis sp. nov., a moderately halophilic, denitrifying bacterium isolated from saline and alkaline soil. Int. J. Syst. Evol. Microbiol. 2008, 58(11):2582-2588.
29. Logan B.E. Microbial Fuel Cells 2008, Wiley.
30. Lovley D.R. Powering microbes with electricity: direct electron transfer from electrodes to microbes. Environ. Microbiol. Rep. 2011, 3(1):27-35.
31. Mahmood Q., Zheng P., Hu B., Jilani G., Azim M.R., Wu D., Liu D. Isolation and characterization of Pseudomonas stutzeri QZ1 from an anoxic sulfide-oxidizing bioreactor. Anaerobe 2009, 15(14):108-115.
32. Manea F., Remes A., Radovan C., Pode R., Picken S., Schoonman J. Simultaneous electrochemical determination of nitrate and nitrite in aqueous solution using Ag-doped zeolite-expanded graphite-epoxy electrode. Talanta 2010, 83(1):66-71.
33. Manohar A.K., Bretschger O., Nealson K.H., Mansfeld F. The use of electrochemical impedance spectroscopy (EIS) in the evaluation of the electrochemical properties of a microbial fuel cell. Bioelectrochemistry 2008, 72(2):149-154.
34. Massol-Deya A.A., Odelson D.A., Hickey R.F., Tiedje J.M. Bacterial community fingerprinting of amplified 16S and 16S-23S ribosomal RNA gene sequences and restriction endonuclease analysis (ARDRA). Molecular Microbial Ecology Manual 1995, 1-8. Kluwer Academic Publisher, Dordrecht, The Netherlands. A.D.L. Akkermans, J.D. van Elsas, F.J. de Bruijn (Eds.).
35. Mohan S.V., Chandrasekhar K. Self-induced bio-potential and graphite electron accepting conditions enhances petroleum sludge degradation in bio-electrochemical system with simultaneous power generation. Bioresour. Technol. 2011, 102(20):9532-9541.
36. Park J., Yoo Y. Biological nitrate removal in industrial wastewater treatment: which electron donor we can choose. Appl. Microbiol. Biotechnol. 2009, 82(3):415-429.
37. Park H.I., Kim D.k., Choi Y.-J., Pak D. Nitrate reduction using an electrode as direct electron donor in a biofilm-electrode reactor. Process Biochem. 2005, 40(10):3383-3388.
38. Puig S., Serra M., Vilar-Sanz A., Cabré M., Bañeras L., Colprim J., Balaguer M.D. Autotrophic nitrite removal in the cathode of microbial fuel cells. Bioresour. Technol. 2011, 102(6):4462-4467.
39. Schloss P.D., Westcott S.L., Ryabin T., Hall J.R., Hartmann M., Hollister E.B., Lesniewski R.A., Oakley B.B., Parks D.H., Robinson C.J., Sahl J.W., Stres B., Thallinger G.G., Van Horn D.J., Weber C.F. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 2009, 75(23):7537-7541.
40. Su W., Zhang L., Li D., Zhan G., Qian J., Tao Y. Dissimilatory nitrate reduction by Pseudomonas alcaliphila with an electrode as the sole electron donor. Biotechnol. Bioeng. 2012, 109:2904-2910.
41. - from water by electrochemical reduction in different reactor configurations. Appl. Catal. B Environ. 2006, 66(1-2):40-50.
42. Tannenbaum S.R., Moran D., Rand W., Cuello C., Correa P. Gastric cancer in Colombia IV. Nitrite and other ions in gastric contents of residents from a high-risk region. J. Natl. Cancer. Inst. 1979, 62(1):9-12.
43. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22(22):4673-4680.
44. Till B.A., Weathers L.J., Alvarez P.J.J. Fe(0)-Supported autotrophic denitrification. Environ. Sci. Technol. 1998, 32(5):634-639.
45. Virdis B., Rabaey K., Rozendal R.A., Yuan Z., Keller J. Simultaneous nitrification, denitrification and carbon removal in microbial fuel cells. Water Res. 2010, 44(9):2970-2980.
46. Watanabe T., Motoyama H., Kuroda M. Denitrification and neutralization treatment by direct feeding of an acidic wastewater containing copper ion and high-strength nitrate to a bio-electrochemical reactor process. Water Res. 2001, 35(17):4102-4110.
47. Williams D.R., Rowe J.J., Romero.P., Eagon R.G. Denitrifying Pseudomonas aeruginosa: some parameters of growth and active transport. Appl. Environ. Microbiol. 1978, 36(2):257-263.
48. Xia X., Tokash J.C., Zhang F., Liang P., Huang X., Logan B.E. Oxygen-reducing biocathodes operating with passive oxygen transfer in microbial fuel cells. Environ. Sci. Technol. 2013, 47(4):2085-2091.
49. You S.J., Ren N.Q., Zhao Q.L., Wang J.Y., Yang F.L. Power generation and electrochemical analysis of biocathode microbial fuel cell using graphite fibre brush as cathode material. Fuel Cells 2009, 9(5):588-596.
50. Zhang H., Ziv-El M., Rittmann B.E., Krajmalnik-Brown R. Effect of dechlorination and sulfate reduction on the microbial community structure in denitrifying membrane-biofilm reactors. Environ. Sci. Technol. 2010, 44(13):5159-5164.
51. Zhang Y., Sun J., Hu Y., Li S., Xu Q. Bio-cathode materials evaluation in microbial fuel cells: a comparison of graphite felt, carbon paper and stainless steel mesh materials. Int. J. Hydr. Energy 2012, 37(22):16935-16942.