Estimating population diversity with unreliable low frequency counts

Pacific Symposium on Biocomputing

Volumn , Issue , 2012, Pages 203-212

  Bunge, John ^a   Bohning, Dankmar ^b   Allen, Heather ^c   Foster, James A ^d  

^a Department of Obstetrics Gynecology   (United States)

^b UNIVERSITY OF READING   (United Kingdom)

^c NATIONAL ANIMAL DISEASE CENTER   (United States)

^d UNIVERSITY OF IDAHO   (United States)

Author keywords

Capture recapture; Left censored data; Microbial diversity; Mixture model; Species problem

Indexed keywords

DNA SEQUENCES; FREQUENCY ESTIMATION; GENE ENCODING; MIXTURES;

CAPTURE-RECAPTURE; CENSORED DATA; MICROBIAL DIVERSITY; MIXTURE MODEL; SPECIES PROBLEM;

POPULATION STATISTICS;

ANIMAL; ARTICLE; BAYES THEOREM; BIODIVERSITY; BIOLOGY; FECES; GENETICS; HIGH THROUGHPUT SEQUENCING; MICROFLORA; STATISTICAL MODEL; SWINE; VIROLOGY;

ANIMALS; BAYES THEOREM; BIODIVERSITY; COMPUTATIONAL BIOLOGY; FECES; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; MICROBIOTA; MODELS, STATISTICAL; SWINE;

EID: 84891392308     PISSN: 23356928     EISSN: 23356936     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (11)

1. M. Lladser, R. Gouet and J. Reeder, PLoS ONE 6, (2011). DOI:10.1371/journal.pone.0021105
2. J. Bunge and K. Barger, Biometrical Journal 50, 971 (2008).
3. C. Quince, L. Anders and R. J. Davenport, BMC Bioinformatics 12, 38 (2011).
4. D. Böhning and D. Schön, J. Roy. Statist. Soc. Ser. C 54, 721 (2005).
5. M. Robb and D. Böhning, Biometrical Journal 53, 75 (2011).
6. K. Barger and J. Bunge, J. Bayesian Analysis 5, 765 (2010).
7. A. Farcomeni and L. Tardella, Test 19, 187 (2010).
8. D. Manrique-Vallier and S. Fienberg, Biometrical Journal 50, 1051 (2008).
9. H. Allen, T. Looft, D. Bayles, S. Humphrey, U. Levine, D. Alt, and T. Stanton (2011). Submitted.
10. S. Sun et al., Nucleic Acids Research 39, 546 (2011).
11. J. Bunge, Pac. Symp. Biocomput., 121 (2011).