Profiling transcriptomic response of Enchytraeus albidus to Cu and Ni: Comparison with Cd and Zn

Environmental Pollution

Volumn 186, Issue , 2014, Pages 75-82

  Gomes, Susana I L ^a   Scott Fordsmand, Janeck J ^b   Amorim, Mónica J B ^a  

^a UNIVERSITY OF AVEIRO   (Portugal)

^b AARHUS UNIVERSITY   (Denmark)

Author keywords

Gene expression; Heavy metals; Microarray; Toxicity

Indexed keywords

ECO-TOXICOLOGY; EFFECT CONCENTRATION; ENCHYTRAEUS ALBIDUS; GENE LIBRARIES; HIER-ARCHICAL CLUSTERING; MODEL ORGANISMS; SOIL INVERTEBRATES; TOXICOKINETICS;

GENE EXPRESSION; HEAVY METALS; MICROARRAYS; NICKEL; TOXICITY; ZINC;

CADMIUM;

CADMIUM; COPPER; NICKEL; ZINC;

ANNELID; CONCENTRATION (COMPOSITION); COPPER; ECOTOXICOLOGY; GENE EXPRESSION; NICKEL; TOXICITY;

ANIMAL EXPERIMENT; ARTICLE; COMPARATIVE STUDY; CONCENTRATION (PARAMETERS); CONCENTRATION RESPONSE; CONTROLLED STUDY; ENCHYTRAEUS; ENVIRONMENTAL EXPOSURE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; NONHUMAN; OLIGOCHAETA; OXIDATIVE STRESS; REPRODUCTIVE BEHAVIOR; REPRODUCTIVE TOXICITY; TOXICOKINETICS;

EUROPE;

GENE EXPRESSION; HEAVY METALS; MICROARRAY; TOXICITY;

ANIMALS; CADMIUM; CLUSTER ANALYSIS; COPPER; ECOTOXICOLOGY; EUROPE; METALS; NICKEL; OLIGOCHAETA; SOIL; SOIL POLLUTANTS; ZINC;

EID: 84890933155     PISSN: 02697491     EISSN: 18736424     Source Type: Journal    
DOI: 10.1016/j.envpol.2013.11.031     Document Type: Article

References (48)

1. H. Akagi, H. Higuchi, H. Sumimoto, T. Igarashi, A. Kabashima, H. Mizuguchi, M. Izumiya, G. Sakai, M. Adachi, S. Funakoshi, S. Nakamura, Y. Hamamoto, T. Kanai, H. Takaishi, Y. Kawakami, and T. Hibi Suppression of myeloid cell leukemia-1 (Mcl-1) enhances chemotherapy-associated apoptosis in gastric cancer cells Gastric Cancer 16 2013 100 110
2. A. Alexa, J. Rahnenfuhrer, and T. Lengauer Improved scoring of functional groups from gene expression data by decorrelating GO graph structure Bioinformatics 22 2006 1600 1607 (Pubitemid 43985293)
3. M.J.B. Amorim, S.C. Novais, K. Van der Ven, T. Vandenbrouck, A.M.V.M. Soares, and W. De Coen Development of a microarray in Enchytraeus albidus (Oligochaeta): preliminary tool with diverse applications Environ. Toxicol. Chem. 30 2011 1395 1402
4. M.J.B. Amorim, J. Rombke, H.J. Schallna, and A.M.V.M. Soares Effect of soil properties and aging on the toxicity of copper for Enchytraeus albidus, Enchytraeus luxuriosus, and Folsomia candida Environ. Toxicol. Chem. 24 2005 1875 1885 (Pubitemid 41137320)
5. A.S. Andrew, A.J. Warren, A. Barchowsky, K.A. Temple, L. Klei, N.V. Soucy, K.A. O'Hara, and J.W. Hamilton Genomic and proteomic profiling of responses to toxic metals in human lung cells Environ. Health Perspect. 111 2003 825 838 (Pubitemid 36701362)
6. A. Arita, and M. Costa Epigenetics in metal carcinogenesis: nickel, arsenic, chromium and cadmium Metallomics 1 2009 222 228
7. P. Cheung, and P. Lau Epigenetic regulation by histone methylation and histone variants Mol. Endocrinol. 19 2005 563 573 (Pubitemid 40349431)
8. A. Conesa, S. Gotz, J.M. Garcia-Gomez, J. Terol, M. Talon, and M. Robles Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research Bioinformatics 21 2005 3674 3676 (Pubitemid 41264107)
9. P. Criel, K. Lock, H. Van Eeckhout, K. Oorts, E. Smolders, and C.R. Janssen Influence of soil properties on copper toxicity for two soil invertebrates Environ. Toxicol. Chem. 27 2008 1748 1755
10. V. D'Anto, R. Valletta, M. Amato, H. Schweikl, M. Simeone, S. Paduano, S. Rengo, and G. Spagnuolo Effect of nickel chloride on cell proliferation Open Dent. J. 6 2012 177 181
11. J. Ding, G.P. He, W.F. Gong, W. Wen, W. Sun, B.F. Ning, S.N. Huang, K. Wu, C.S. Huang, M.C. Wu, W.F. Xie, and H.Y. Wang Effects of nickel on cyclin expression, cell cycle progression and cell proliferation in human pulmonary cells Cancer Epidemiol. Biomarkers Prevent. 18 2009 1720 1729
12. L.M. Gaetke, and C.K. Chow Copper toxicity, oxidative stress, and antioxidant nutrients Toxicology 189 2003 147 163 (Pubitemid 36725029)
13. Y. Hayashi, P. Engelmann, R. Foldbjerg, M. Szabo, I. Somogyi, E. Pollak, L. Molnar, H. Autrup, D.S. Sutherland, J. Scott-Fordsmand, and L.-H. Heckman Earthworms and humans in vitro: characterizing evolutionarily conserved stress and immune responses to silver nanoparticles Environ. Sci. Technol. 46 2012 4166 4173
14. F.G.J. Henle Ueber Enchytraeus, eine neue Anneliden-Gattung Archiv. Anat. Physiol. wiss. Med. 1837 74 90
15. ISO (The International Organization for Standardization) Soil Quality - Effects of Pollutants on Enchytraeidae (Enchytraeus sp.) - Determination of Effects on Reproduction and Survival 2003 Guideline n 16387. Genève, Switzerland
16. Y.A. Iyaka Nickel in soils: a review of its distribution and impacts Sci. Res. Essays 6 2011 6774 6777
17. A. Jones, P. Panagos, S. Barcelo, F. Bouraoui, C. Bosco, O. Dewitte, C. Gardi, M. Erhard, J. Hervás, R. Hiederer, S. Jeffery, A. Lukewille, L. Marmo, L. Montanarella, C. Olazábal, J.-E. Petersen, V. Penizek, T. Strassburger, G. Tóth, M. Van Den Eeckhaut, M. Van Liedekerke, F. Verheijen, E. Viestova, and Y. Yigini The State of Soil in Europe - a Contribution of the JRC to European Environment Agency's Environment State and Outlook Report - SOER 2010 2012 European Commission - EUR 25186 EN - Joint Research Center
18. Q.D. Ke, T.P. Ellen, and M. Costa Nickel compounds induce histone ubiquitination by inhibiting histone deubiquitinating enzyme activity Toxicol. Appl. Pharmacol. 228 2008 190 199
19. Q.D. Ke, Q. Li, T.P. Ellen, H. Sun, and M. Costa Nickel compounds induce phosphorylation of histone H3 at serine 10 by activating JNK-MAPK pathway Carcinogenesis 29 2008 1276 1281 (Pubitemid 351958709)
20. R. Laskowski, A.J. Bednarska, D. Spurgeon, C. Svendsen, and C.A.M. van Gestel Three-phase metal kinetics in terrestrial invertebrates exposed to high metal concentrations Sci. Total Environ. 408 2010 3794 3802
21. L.J. Lister, C. Svendsen, J. Wright, H.L. Hooper, and D.J. Spurgeon Modelling the joint effects of a metal and a pesticide on reproduction and toxicokinetics in Lumbricid earthworms Environ. Int. 37 2011 663 670
22. K. Lock, and C.R. Janssen Ecotoxicity of nickel to Eisenia fetida, Enchytraeus albidus and Folsomia candida Chemosphere 46 2002 197 200 (Pubitemid 34072360)
23. E.L. Lowe, T.M. Doherty, H. Karahashi, and M. Arditi Ubiquitination and de-ubiquitination: role in regulation of signaling by Toll-like receptors J. Endotoxin Res. 12 2006 337 345 (Pubitemid 47487889)
24. Q.R. Ma, H. Yang, X.H. Zhao, Y.K. Zhang, A.H. Yao, P. Cheng, Y.B. Xie, H.K. Zhao, G. Ju, and F. Kuang The protective effects of inosine against chemical hypoxia on cultured rat oligodendrocytes Cell. Mol. Neurobiol. 31 2011 1171 1186
25. K. Maraldo, B. Christensen, B. Strandberg, and M. Holmstrup Effects of copper on enchytraeids in the field under differing soil moisture regimes Environ. Toxicol. Chem. 25 2006 604 612 (Pubitemid 43134265)
26. E. Nieboer, and D.H.S. Richardson The replacement of the non-descriptive term "heavy metals" by biologically and chemically significant classification of metal ions Environ. Pollut. 1 1980 3 26 (Pubitemid 10102992)
27. S.C. Novais, J. Arrais, P. Lopes, T. Vandenbrouck, W. De Coen, D. Roelofs, A.M.V.M. Soares, and M.J.B. Amorim Enchytraeus albidus microarray: enrichment, design, annotation and database (EnchyBASE) Plos One 7 2012
28. S.C. Novais, W. De Coen, and M.J.B. Amorim Transcriptional responses in Enchytraeus albidus (Oligochaeta): comparison between cadmium and zinc exposure and linkage to reproduction effects Environ. Toxicol. Chem. 31 2012 2289 2299
29. S.C. Novais, S.I.L. Gomes, C. Gravato, L. Guilhermino, W. De Coen, A.M.V.M. Soares, and M.J.B. Amorim Reproduction and biochemical responses in Enchytraeus albidus (Oligochaeta) to zinc or cadmium exposures Environ. Pollut. 159 2011 1836 1843
30. OECD Guidelines for the Testing of Chemicals No. 220 Enchytraeid Reproduction Test 2004 Organization for Economic Cooperation and Development Paris
31. J. Owen, B.A. Hedley, C. Svendsen, J. Wren, M.J. Jonker, P.K. Hankard, L.J. Lister, S.R. Sturzenbaum, A.J. Morgan, D.J. Spurgeon, M.L. Blaxter, and P. Kille Transcriptome profiling of developmental and xenobiotic responses in a keystone soil animal, the oligochaete annelid Lumbricus rubellus BMC Genomics 9 2008
32. J.J. Pan, Q.S. Chang, X. Wang, Y. Son, Z. Zhang, G. Chen, J. Luo, Y.Y. Bi, F. Chen, and X.L. Shi Reactive oxygen species-activated Akt/ASK1/p38 signaling pathway in nickel compound-induced apoptosis in BEAS 2B cells Chem. Res. Toxicol. 23 2010 568 577
33. M.G. Permenter, J.A. Lewis, and D.A. Jackson Exposure to nickel, chromium, or cadmium causes distinct changes in the gene expression patterns of a rat liver derived cell line Plos One 6 2011
34. T. Phipps, S.L. Tank, J. Wirtz, L. Brewer, A. Coyner, L.S. Ortego, and A. Fairbrother Essentiality of nickel and homeostatic mechanisms for its regulation in terrestrial organisms Environ. Rev. 10 2002 209 261 (Pubitemid 41687970)
35. S.V.S. Rana Metals and apoptosis: recent developments J. Trace. Elem. Med. Biol. 22 2008 262 284
36. K. Salnikow, T. Davidson, and M. Costa The role of hypoxia-inducible signaling pathway in nickel carcinogenesis Environ. Health Perspect. 110 2002 831 834 (Pubitemid 35276876)
37. K. Salnikow, and A. Zhitkovich Genetic and epigenetic mechanisms in metal carcinogenesis and cocarcinogenesis: nickel, arsenic, and chromium Chem. Res. Toxicol. 21 2008 28 44 (Pubitemid 351219706)
38. Y. Sasaki, T. Araki, and J. Milbrandt Stimulation of nicotinamide adenine dinucleotide biosynthetic pathways delays axonal degeneration after axotomy J. Neurosci. 26 2006 8484 8491 (Pubitemid 44316176)
39. M. Schmidt, and M. Goebeler Nickel allergies: paying the Toll for innate immunity J. Mol. Med.-Jmm 89 2011 961 970
40. J.J. Scott-Fordsmand, P.H. Krogh, and S.P. Hopkin Toxicity of nickel to a soil-dwelling springtail, Folsomia fimetaria (Collembola: Isotomidae) Ecotoxicol. Environ. Saf. 43 1999 57 61 (Pubitemid 29211824)
41. B. Skaug, X. Jiang, and Z.J. Chen The role of ubiquitin in NF-kappaB regulatory pathways Annu. Rev. Biochem. 78 2009 769 796
42. B.A. Smith, P. Egeler, D. Gilberg, W. Hendershot, and G.L. Stephenson Uptake and elimination of cadmium and zinc by Eisenia andrei during exposure to low concentrations in artificial soil Arch. Environ. Contam. Toxicol. 59 2010 264 273
43. E. Smolders, K. Oorts, P. van Sprang, I. Schoeters, C.R. Janssen, S.P. McGrath, and M.J. McLaughlin Toxicity of trace metals in soil as affected by soil type and aging after contamination: using calibrated bioavailability models to set ecological soil standards Environ. Toxicol. Chem. 28 2009 1633 1642
44. M.O. Song, J.Y. Li, and J.H. Freedman Physiological and toxicological transcriptome changes in HepG2 cells exposed to copper Physiol. Genomics 38 2009 386 401
45. D.J. Spurgeon, and S.P. Hopkin Comparisons of metal accumulation and excretion kinetics in earthworms (Eisenia fetida) exposed to contaminated field and laboratory soils Appl. Soil Ecol. 11 1999 227 243 (Pubitemid 29174738)
46. L. Virag, and C. Szabo Purines inhibit poly(ADP-ribose) polymerase activation and modulate oxidant-induced cell death Faseb J. 15 2001 99 107 (Pubitemid 32061660)
47. Y.Q. Wang, and H.G. Dohlman Regulation of G protein and mitogen-activated protein kinase signaling by ubiquitination: insights from model organisms Circ. Res. 99 2006 1305 1314 (Pubitemid 44949666)
48. Q.W. Zhai, H.B. Ji, Z.C. Zheng, X. Yu, L.Y. Sun, and X.Y. Liu Copper induces apoptosis in BA/F3 beta cells: Bax, reactive oxygen species, and NF kappa B are involved J. Cell. Physiol. 184 2000 161 170 (Pubitemid 30432307)