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Volumn 20, Issue 1-2, 2004, Pages 71-76

The study of the canonical watson-crick DNA base pairs by moller-plesset perturbation method: The nature of their stability

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EID: 84890871907     PISSN: 02337657     EISSN: 19936842     Source Type: Journal    
DOI: 10.7124/bc.000693     Document Type: Article
Times cited : (2)

References (26)
  • 1
    • 0037010001 scopus 로고    scopus 로고
    • Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations
    • Hobza, P., Sponer, J. Toward true DNA base-stacking energies: MP2, CCSD(T), and complete basis set calculations (2002) Journal of the American Chemical Society, 124 (39), pp. 11802-11808
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.39 , pp. 11802-11808
    • Hobza, P.1    Sponer, J.2
  • 2
    • 0002594455 scopus 로고    scopus 로고
    • Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases
    • Sponer, J., Leszczynski, J., Hobza, P. Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases (2002) Biopotymers (Nucl. Acids Sci.), 61, p. 331
    • (2002) Biopotymers (Nucl. Acids Sci.) , vol.61
    • Sponer, J.1    Leszczynski, J.2    Hobza, P.3
  • 3
    • 0032804830 scopus 로고    scopus 로고
    • The nature of the hydrogen bond in DNA base pairs: The role of charge transfer and resonance assistance
    • Guerra, C.F., Bickelhaupt, F.M., Snijders, J.G., Baerends, E.J. The nature of the hydrogen bond in DNA base pairs: The role of charge transfer and resonance assistance (1999) Chemistry - A European Journal, 5 (12), pp. 3581-3594
    • (1999) Chemistry - A European Journal , vol.5 , Issue.12 , pp. 3581-3594
    • Guerra, C.F.1    Bickelhaupt, F.M.2    Snijders, J.G.3    Baerends, E.J.4
  • 5
    • 84986501678 scopus 로고
    • Structural and electronic property changes of the nucleic bases upon base pair formation
    • Saniamwia, R., Vazquez, A. Structural and electronic property changes of the nucleic bases upon base pair formation (1994) J. Comput. Chem, 15, pp. 981-996
    • (1994) J. Comput. Chem , vol.15 , pp. 981-996
    • Saniamwia, R.1    Vazquez, A.2
  • 6
    • 0000908545 scopus 로고    scopus 로고
    • An ab initio study of DNA base pair hydrogen bonding: A comparison of plane-wave versus Gaussian-type function methods
    • Fellers, R.S., Barsky, D., Gygi, F., Colvin, M. An ab initio study of DNA base pair hydrogen bonding: A comparison of plane-wave versus Gaussian-type function methods (1999) Chemical Physics Letters, 312 (5-6), pp. 548-555
    • (1999) Chemical Physics Letters , vol.312 , Issue.5-6 , pp. 548-555
    • Fellers, R.S.1    Barsky, D.2    Gygi, F.3    Colvin, M.4
  • 7
    • 4544244008 scopus 로고    scopus 로고
    • A comparative study of hydrogen bonding using density functional theory
    • Lai, C.-C., Shen, C.-C., Hu, C.-H. A comparative study of hydrogen bonding using density functional theory (2001) Journal of the Chinese Chemical Society, 48 (2), pp. 145-152
    • (2001) Journal of the Chinese Chemical Society , vol.48 , Issue.2 , pp. 145-152
    • Lai, C.-C.1    Shen, C.-C.2    Hu, C.-H.3
  • 9
    • 0037439855 scopus 로고    scopus 로고
    • Fast approximate methods for calculating nucleic acid base pair interaction energies
    • Sherer, E.C., York, D.M., Cramer, C.J. Fast approximate methods for calculating nucleic acid base pair interaction energies (2003) Journal of Computational Chemistry, 24 (1), pp. 57-67
    • (2003) Journal of Computational Chemistry , vol.24 , Issue.1 , pp. 57-67
    • Sherer, E.C.1    York, D.M.2    Cramer, C.J.3
  • 10
    • 0346394774 scopus 로고    scopus 로고
    • Ground- and excited-state properties of DNA base molecules from plane-wave calculations using ultrasoft pseudopotentials
    • Preuss, M., Schmidt, W.G., Seino, K., Furthmuller, J., Bechstedt, F. Ground- and excited-state properties of DNA base molecules from plane-wave calculations using ultrasoft pseudopotentials (2004) Journal of Computational Chemistry, 25 (1), pp. 112-122
    • (2004) Journal of Computational Chemistry , vol.25 , Issue.1 , pp. 112-122
    • Preuss, M.1    Schmidt, W.G.2    Seino, K.3    Furthmuller, J.4    Bechstedt, F.5
  • 11
    • 0001249198 scopus 로고    scopus 로고
    • Kobayashi, K. Efficiency of the MO method using a Slater-type basis set and non-local density functional formalism for describing DNA base stacking energy
    • Kurita, N., Araki, M., Nakao, K., Kobayashi, K. Efficiency of the MO method using a Slater-type basis set and non-local density functional formalism for describing DNA base stacking energy (1999) Chemical Physics Letters, 313 (3-4), pp. 693-700
    • (1999) Chemical Physics Letters , vol.313 , Issue.3-4 , pp. 693-700
    • Kurita, N.1    Araki, M.2    Nakao, K.3
  • 12
    • 0038354729 scopus 로고    scopus 로고
    • Tanaka, S. Hydrogen bonding of DNA base pairs by consistent charge equilibration method combined with universal force field
    • Ogawa, T., Kurita, N., Sekino, H., Kitao, O., Tanaka, S. Hydrogen bonding of DNA base pairs by consistent charge equilibration method combined with universal force field (2003) Chemical Physics Letters, 374 (3-4), pp. 271-278
    • (2003) Chemical Physics Letters , vol.374 , Issue.3-4 , pp. 271-278
    • Ogawa, T.1    Kurita, N.2    Sekino, H.3    Kitao, O.4
  • 13
    • 12144284677 scopus 로고    scopus 로고
    • The nature of the stability of Watson-Crick nucleic acids base pairs. Ab initio Hartree-Fock and post-Hartree-Fock theory studies
    • Danilov, V.I., Anisimov, V.M. The nature of the stability of Watson-Crick nucleic acids base pairs. Ab initio Hartree-Fock and post-Hartree-Fock theory studies (2003) J. Biomol. Struct, and Dyn, 20 D, pp. 935-936
    • (2003) J. Biomol. Struct, and Dyn , vol.20 , pp. 935-936
    • Danilov, V.I.1    Anisimov, V.M.2
  • 14
    • 12144263863 scopus 로고    scopus 로고
    • The geometry of canonical Watson-Crick DNA base pairs: Ab initio post-Hartree-Fock theory studies
    • Danilov, V.J., Anisimov, V.M. The geometry of canonical Watson-Crick DNA base pairs: Ab initio post-Hartree-Fock theory studies (2003) J. Biomol. Struct, and Dyn, 20, pp. 937-938
    • (2003) J. Biomol. Struct, and Dyn , vol.20 , pp. 937-938
    • Danilov, V.J.1    Anisimov, V.M.2
  • 15
    • 6944251055 scopus 로고
    • Note on an approximation treatment for many-electron systems
    • Moller, Chr., Plesset, M.S. Note on an approximation treatment for many-electron systems (1934) Physical Review, 46 (7), pp. 618-622
    • (1934) Physical Review , vol.46 , Issue.7 , pp. 618-622
    • Moller, C.1    Plesset, M.S.2
  • 20
    • 84947142304 scopus 로고    scopus 로고
    • On the connection between the supermolecular Moller-Plesset treatment of the interaction energy and the perturbation theory of intermolecular forces
    • Chalasinski, G., Szczesniak, M.M. On the connection between the supermolecular Moller-Plesset treatment of the interaction energy and the perturbation theory of intermolecular forces (1988) Mol. Phys, 63, pp. 205-224
    • Mol. Phys , vol.63 , pp. 205-224
    • Chalasinski, G.1    Szczesniak, M.M.2
  • 21
    • 84984051896 scopus 로고
    • Interactions between nucleic acid bases in hydrogen bonded and stacked configurations: The role of the molecular charge distribution
    • Langlei, J., Claverie, P., Caron, F., Boeuve, J.C. Interactions between nucleic acid bases in hydrogen bonded and stacked configurations: The role of the molecular charge distribution (1981) Int. J. Quant. Chem, 20, pp. 299-338
    • (1981) Int. J. Quant. Chem , vol.20 , pp. 299-338
    • Langlei, J.1    Claverie, P.2    Caron, F.3    Boeuve, J.C.4
  • 22
    • 0011824888 scopus 로고    scopus 로고
    • Structures and energies of hydrogen-bonded DNA base pairs. A nonempirical study with inclusion of electron correlation
    • Sponer, J., Leszczynski, J., Hobza, P. Structures and energies of hydrogen-bonded DNA base pairs. A nonempirical study with inclusion of electron correlation (1996) Journal of Physical Chemistry, 100 (5), pp. 1965-1974
    • (1996) Journal of Physical Chemistry , vol.100 , Issue.5 , pp. 1965-1974
    • Sponer, J.1    Leszczynski, J.2    Hobza, P.3
  • 24
    • 0028080634 scopus 로고
    • Theoretical investigation of the hydrogen bond strengths in guanine-cytosine and adenine-thymine base pairs
    • Gould, I.R., Kollman, P.A. Theoretical investigation of the hydrogen bond strengths in guanine-cytosine and adenine-thymine base pairs (1994) Journal of the American Chemical Society, 116 (6), pp. 2493-2499
    • (1994) Journal of the American Chemical Society , vol.116 , Issue.6 , pp. 2493-2499
    • Gould, I.R.1    Kollman, P.A.2
  • 25
    • 0038690207 scopus 로고    scopus 로고
    • Unique tertiary and neighbor interactions determine conservation patterns of cis Watson-Crick A/G base-pairs
    • Sponer, J., Mokdad, A., Sponer, J.E., Spackova, N., Leszczynski, J., Leontis, N.B. Unique tertiary and neighbor interactions determine conservation patterns of cis Watson-Crick A/G base-pairs (2003) Journal of Molecular Biology, 330 (5), pp. 967-978
    • (2003) Journal of Molecular Biology , vol.330 , Issue.5 , pp. 967-978
    • Sponer, J.1    Mokdad, A.2    Sponer, J.E.3    Spackova, N.4    Leszczynski, J.5    Leontis, N.B.6
  • 26
    • 0030003963 scopus 로고    scopus 로고
    • Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA
    • El Hassan, M.A., Calladine, C.R. Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA (1996) Journal of Molecular Biology, 259 (1), pp. 95-103
    • (1996) Journal of Molecular Biology , vol.259 , Issue.1 , pp. 95-103
    • El Hassan, M.A.1    Calladine, C.R.2


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