메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages 63-73

Prior robust empirical Bayes inference for large-scale data by conditioning on rank with application to microarray data

Author keywords

Bayesian shrinkage; Confidence intervals; Ranking bias; Robust multiple estimation

Indexed keywords

ARTICLE; BAYES THEOREM; BAYESIAN SHRINKAGE; BREAST TUMOR; COMPUTER SIMULATION; CONFIDENCE INTERVAL; DNA MICROARRAY; FEMALE; GENE EXPRESSION PROFILING; GENETICS; HUMAN; METHODOLOGY; NEOPLASM; RANKING BIAS; ROBUST MULTIPLE ESTIMATION; STATISTICAL ANALYSIS; STATISTICAL MODEL;

EID: 84890537645     PISSN: 14654644     EISSN: 14684357     Source Type: Journal    
DOI: 10.1093/biostatistics/kxt026     Document Type: Article
Times cited : (5)

References (31)
  • 1
    • 14944365889 scopus 로고    scopus 로고
    • False discovery rate-adjusted multiple confidence intervals for selected parameters
    • BENJAMINI, Y. AND YEKUTIELI, D. (2005). False discovery rate-adjusted multiple confidence intervals for selected parameters. Journal of the American Statistical Association 100(469), 71-81.
    • (2005) Journal of the American Statistical Association , vol.100 , Issue.469 , pp. 71-81
    • Benjamini, Y.1    Yekutieli, D.2
  • 2
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for affymetrix genechips revealed by a wholly defined control dataset
    • CHOE, S. E., BOUTROS, M., MICHELSON, A. M., CHURCH, G. M. AND HALFON, M. S. (2005). Preferred analysis methods for affymetrix genechips revealed by a wholly defined control dataset. Genome Biology 6(2), R16.
    • (2005) Genome Biology , vol.6 , Issue.2
    • Choe, S.E.1    Boutros, M.2    Michelson, A.M.3    Church, G.M.4    Halfon, M.S.5
  • 4
    • 70350094855 scopus 로고    scopus 로고
    • Nonparametric Bayes applications to biostatistics
    • DUNSON, D. B. (2010). Nonparametric Bayes applications to biostatistics. Bayesian Nonparametrics 28, 223.
    • (2010) Bayesian Nonparametrics , vol.28 , pp. 223
    • Dunson, D.B.1
  • 5
    • 16244419383 scopus 로고    scopus 로고
    • Approximate Bayesian inference for quantiles
    • DUNSON, D. B. AND TAYLOR, J. A. (2005). Approximate Bayesian inference for quantiles. Nonparametric Statistics 17(3), 385-400.
    • (2005) Nonparametric Statistics , vol.17 , Issue.3 , pp. 385-400
    • Dunson, D.B.1    Taylor, J.A.2
  • 6
    • 47749152434 scopus 로고    scopus 로고
    • Microarrays, empirical Bayes and the two-groups model
    • EFRON, B. (2008). Microarrays, empirical Bayes and the two-groups model. Statistical Science, 23(1), 1-22.
    • (2008) Statistical Science , vol.23 , Issue.1 , pp. 1-22
    • Efron, B.1
  • 9
    • 0031318605 scopus 로고    scopus 로고
    • Nonlinearly smoothed em density estimation with automated smoothing parameter selection for nonparametric deconvolution problems
    • EGGERMONT, P. P. B. AND LARICCIA, V. N. (1997). Nonlinearly smoothed EM density estimation with automated smoothing parameter selection for nonparametric deconvolution problems. Journal of the American Statistical Association 92(440), 1451-1458.
    • (1997) Journal of the American Statistical Association , vol.92 , Issue.440 , pp. 1451-1458
    • Eggermont, P.P.B.1    Lariccia, V.N.2
  • 11
    • 64549126029 scopus 로고    scopus 로고
    • Empirical Bayes methods for estimation and confidence intervals in high-dimensional problems
    • GHOSH, D. (2009). Empirical Bayes methods for estimation and confidence intervals in high-dimensional problems. Statistica Sinica 19(1), 125.
    • (2009) Statistica Sinica , vol.19 , Issue.1 , pp. 125
    • Ghosh, D.1
  • 12
    • 60949103469 scopus 로고    scopus 로고
    • Bayesian ROC curve estimation under binormality using a rank likelihood
    • GU, J. AND GHOSAL, S. (2009). Bayesian ROC curve estimation under binormality using a rank likelihood. Journal of Statistical Planning and Inference 139(6), 2076-2083.
    • (2009) Journal of Statistical Planning and Inference , vol.139 , Issue.6 , pp. 2076-2083
    • Gu, J.1    Ghosal, S.2
  • 14
    • 0347133693 scopus 로고
    • Parametric empirical Bayes confidence intervals based on James-Stein estimator
    • HE, K. (1992). Parametric empirical Bayes confidence intervals based on James-Stein estimator. Statistics and Decisions 10(1-2), 121-132.
    • (1992) Statistics and Decisions , vol.10 , Issue.1-2 , pp. 121-132
    • He, K.1
  • 15
    • 60949106826 scopus 로고    scopus 로고
    • Extending the rank likelihood for semiparametric copula estimation
    • HOFF, P. D. (2007). Extending the rank likelihood for semiparametric copula estimation. The Annals of Applied Statistics 1(1), 265-283.
    • (2007) The Annals of Applied Statistics , vol.1 , Issue.1 , pp. 265-283
    • Hoff, P.D.1
  • 16
    • 22944460748 scopus 로고    scopus 로고
    • Spike and slab variable selection: Frequentist and bayesian strategies
    • DOI 10.1214/009053604000001147
    • ISHWARAN, H. AND RAO, J. S. (2005). Spike and slab variable selection: frequentist and Bayesian strategies. The Annals of Statistics 33(2), 730-773. (Pubitemid 41053721)
    • (2005) Annals of Statistics , vol.33 , Issue.2 , pp. 730-773
    • Ishwaran, H.1    Rao, J.S.2
  • 18
    • 58549093598 scopus 로고    scopus 로고
    • Ranking bias in association studies
    • JEFFRIES, N. O. (2009). Ranking bias in association studies. Human Heredity 67(4), 267-275.
    • (2009) Human Heredity , vol.67 , Issue.4 , pp. 267-275
    • Jeffries, N.O.1
  • 19
    • 0346888587 scopus 로고    scopus 로고
    • On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles
    • DOI 10.1002/sim.1548
    • KENDZIORSKI, C. M., NEWTON, M. A., LAN, H. AND GOULD, M. N. (2003). On parametric empirical Bayes methods for comparing multiple groups using replicated gene expression profiles. Statistics inMedicine 22(24), 3899-3914. (Pubitemid 38008708)
    • (2003) Statistics in Medicine , vol.22 , Issue.24 , pp. 3899-3914
    • Kendziorski, C.M.1    Newton, M.A.2    Lan, H.3    Gould, M.N.4
  • 20
    • 79956309875 scopus 로고    scopus 로고
    • Spiked Dirichlet process prior for Bayesian multiple hypothesis testing in random effects models
    • KIM, S., DAHL, D. B. AND VANNUCCI, M. (2009). Spiked Dirichlet process prior for Bayesian multiple hypothesis testing in random effects models. Bayesian Analysis 4(4), 707-732.
    • (2009) Bayesian Analysis , vol.4 , Issue.4 , pp. 707-732
    • Kim, S.1    Dahl, D.B.2    Vannucci, M.3
  • 21
    • 84950461861 scopus 로고
    • Empirical Bayes confidence intervals based on bootstrap samples
    • LAIRD, N. M. AND LOUIS, T. A. (1987). Empirical Bayes confidence intervals based on bootstrap samples. Journal of the American Statistical Association 82(399), 739-750.
    • (1987) Journal of the American Statistical Association , vol.82 , Issue.399 , pp. 739-750
    • Laird, N.M.1    Louis, T.A.2
  • 22
    • 84950432453 scopus 로고
    • Parametric empirical Bayes inference: Theory and applications
    • MORRIS, C. N. (1983). Parametric empirical Bayes inference: theory and applications. Journal of the American Statistical Association 78(381), 47-55.
    • (1983) Journal of the American Statistical Association , vol.78 , Issue.381 , pp. 47-55
    • Morris, C.N.1
  • 23
    • 80055046529 scopus 로고    scopus 로고
    • An empirical Bayes mixture method for effect size and false discovery rate estimation
    • MURALIDHARAN, O. (2010). An empirical Bayes mixture method for effect size and false discovery rate estimation. The Annals of Applied Statistics 4(1), 422-438.
    • (2010) The Annals of Applied Statistics , vol.4 , Issue.1 , pp. 422-438
    • Muralidharan, O.1
  • 24
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • DOI 10.1089/106652701300099074
    • NEWTON, M. A., KENDZIORSKI, C. M., RICHMOND, C. S., BLATTNER, F. R. AND TSUI, K. W. (2001). On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data. Journal of Computational Biology 8(1), 37-52. (Pubitemid 32679478)
    • (2001) Journal of Computational Biology , vol.8 , Issue.1 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 25
    • 4444235995 scopus 로고    scopus 로고
    • Detecting differential gene expression with a semiparametric hierarchical mixture method
    • DOI 10.1093/biostatistics/5.2.155
    • NEWTON, M. A., NOUEIRY, A., SARKAR, D. AND AHLQUIST, P. (2004). Detecting differential gene expression with a semiparametric hierarchical mixture method. Biostatistics 5(2), 155-176. (Pubitemid 41180221)
    • (2004) Biostatistics , vol.5 , Issue.2 , pp. 155-176
    • Newton, M.A.1    Noueiry, A.2    Sarkar, D.3    Ahlquist, P.4
  • 26
    • 77749264356 scopus 로고    scopus 로고
    • Bayesian ranking and selection methods using hierarchical mixture models in microarray studies
    • NOMA, H., MATSUI, S., OMORI, T. AND SATO, T. (2010). Bayesian ranking and selection methods using hierarchical mixture models in microarray studies. Biostatistics 11(2), 281-289.
    • (2010) Biostatistics , vol.11 , Issue.2 , pp. 281-289
    • Noma, H.1    Matsui, S.2    Omori, T.3    Sato, T.4
  • 27
    • 34548446035 scopus 로고    scopus 로고
    • Sharp simultaneous confidence intervals for the means of selected populations with application to microarray data analysis
    • DOI 10.1111/j.1541-0420.2007.00770.x
    • QIU, J. AND GENE HWANG, J. T. (2007). Sharp simultaneous confidence intervals for themeans of selected populations with application to microarray data analysis. Biometrics 63(3), 767-776. (Pubitemid 47352847)
    • (2007) Biometrics , vol.63 , Issue.3 , pp. 767-776
    • Qiu, J.1    Gene Hwang, J.T.2
  • 28
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
    • SMYTH, G. K. (2004). Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3(1), 3.
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , Issue.1 , pp. 3
    • Smyth, G.K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.