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Volumn 5, Issue 5, 2013, Pages 562-571

Contrasting geographic patterns of genetic variation for molecular markers vs. Phenotypic traits in the energy grass miscanthus sinensis

Author keywords

Biomass; Cell wall composition; Divergent selection; Miscanthus sinensis; Molecular markers; Morphology; Phenology; Population genetic structure

Indexed keywords

BIOLOGY; BIOMASS; CROPS; DNA SEQUENCES; FORESTRY; GENES; LIFE CYCLE; MORPHOLOGY; MULTIVARIANT ANALYSIS;

EID: 84890412940     PISSN: 17571693     EISSN: 17571707     Source Type: Journal    
DOI: 10.1111/gcbb.12025     Document Type: Article
Times cited : (32)

References (55)
  • 3
    • 66749185376 scopus 로고    scopus 로고
    • Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon
    • Bakker EG, Montgomery B, Nguyen T et al. (2009) Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon Molecular Ecology, 18, 2588-2601
    • (2009) Molecular Ecology , vol.18 , pp. 2588-2601
    • Bakker, E.G.1    Montgomery, B.2    Nguyen, T.3
  • 4
    • 33748804424 scopus 로고    scopus 로고
    • A tutorial on statistical methods for population association studies
    • Balding DJ (2006) A tutorial on statistical methods for population association studies Nature Reviews Genetics, 7, 781-791
    • (2006) Nature Reviews Genetics , vol.7 , pp. 781-791
    • Balding, D.J.1
  • 5
    • 84858126570 scopus 로고    scopus 로고
    • Genetic structure linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers
    • Bouchet S, Pot D, Deu M et al. (2012) Genetic structure, linkage disequilibrium and signature of selection in Sorghum: lessons from physically anchored DArT markers PLoS ONE, 7, e33470
    • (2012) PLoS ONE , vol.7
    • Bouchet, S.1    Pot, D.2    Deu, M.3
  • 6
    • 68449083317 scopus 로고    scopus 로고
    • The genetic architecture of maize flowering time
    • Buckler ES, Holland JB, Bradbury PJ et al. (2009) The genetic architecture of maize flowering time. Science, 325, 714-718
    • (2009) Science , vol.325 , pp. 714-718
    • Buckler, E.S.1    Holland, J.B.2    Bradbury, P.J.3
  • 7
    • 0000190415 scopus 로고
    • Genecology of Douglas-fir in a watershed in the Oregon Cascades
    • Campbell RK (1979) Genecology of Douglas-fir in a watershed in the Oregon Cascades Ecology, 60, 1036-1050
    • (1979) Ecology , vol.60 , pp. 1036-1050
    • Campbell, R.K.1
  • 8
    • 0001924419 scopus 로고
    • Mapped genetic variation of Douglas-fir to guide seed transfer in southwest Oregon
    • Campbell RK (1986) Mapped genetic variation of Douglas-fir to guide seed transfer in southwest Oregon. Silvae Genetica, 35, 85-96
    • (1986) Silvae Genetica , vol.35 , pp. 85-96
    • Campbell, R.K.1
  • 9
    • 6444220542 scopus 로고    scopus 로고
    • Miscanthus biomass production for energy in Europe and its potential contribution to decreasing fossil fuel carbon emissions
    • Clifton-Brown JC, Stampfl PF, Jones MB (2004) Miscanthus biomass production for energy in Europe and its potential contribution to decreasing fossil fuel carbon emissions. Global Change Biology, 10, 509-518
    • (2004) Global Change Biology , vol.10 , pp. 509-518
    • Clifton-Brown, J.C.1    Stampfl, P.F.2    Jones, M.B.3
  • 11
    • 84877812440 scopus 로고    scopus 로고
    • Developing Miscanthus for bioenergy
    • (eds Halford NG, Karp A) Royal Society of Chemistry, Cambridge UK
    • Clifton-Brown J, Renvoize S, Chiang Y-C et al. (2011a) Developing Miscanthus for bioenergy. In: Energy Crops (eds Halford NG, Karp A), pp. 301-321. Royal Society of Chemistry, Cambridge, UK
    • (2011) Energy Crops , pp. 301-321
    • Clifton-Brown, J.1    Renvoize, S.2    Chiang, Y.-C.3
  • 12
    • 84866496558 scopus 로고    scopus 로고
    • Thermal requirements for seed germination in Miscanthus compared with switchgrass (Panicum virgatum), reed canary grass (Phalaris arundinaceae), maize (Zea mays) and perennial ryegrass (Lolium perenne)
    • Clifton-Brown J, Robson P, Sanderson R, Hastings A, Valentine J, Donnison I (2011b) Thermal requirements for seed germination in Miscanthus compared with switchgrass (Panicum virgatum), reed canary grass (Phalaris arundinaceae), maize (Zea mays) and perennial ryegrass (Lolium perenne). Global Change Biology Bioenergy, 3, 375-386
    • (2011) Global Change Biology Bioenergy , vol.3 , pp. 375-386
    • Clifton-Brown, J.1    Robson, P.2    Sanderson, R.3    Hastings, A.4    Valentine, J.5    Donnison, I.6
  • 13
    • 0036808395 scopus 로고    scopus 로고
    • Genetic variation, heritability and progeny testing in meadow bromegrass
    • De Araujo MRA, Coulman BE (2002) Genetic variation, heritability and progeny testing in meadow bromegrass. Plant Breeding, 121, 417-424
    • (2002) Plant Breeding , vol.121 , pp. 417-424
    • De Araujo, M.R.A.1    Coulman, B.E.2
  • 14
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
    • Earl D, vonHoldt B (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361
    • (2012) Conservation Genetics Resources , vol.4 , pp. 359-361
    • Earl, D.1    vonHoldt, B.2
  • 15
    • 84974399996 scopus 로고
    • Heritabilities and genetic correlations for yield in Italian ryegrass (Lolium multiflorum Lam) grown at different densities
    • England F (1975) Heritabilities and genetic correlations for yield in Italian ryegrass (Lolium multiflorum Lam) grown at different densities. Journal of Agricultural Science, 84, 153-158
    • (1975) Journal of Agricultural Science , vol.84 , pp. 153-158
    • England, F.1
  • 16
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
    • Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620
    • (2005) Molecular Ecology , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 17
    • 0038818582 scopus 로고    scopus 로고
    • Comment on Genetic structure of human populations
    • Excoffier L, Hamilton G (2003) Comment on "Genetic structure of human populations" Science, 300, 1877b
    • (2003) Science , vol.300
    • Excoffier, L.1    Hamilton, G.2
  • 18
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3 0): An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics, 1, 47-50
    • (2005) Evolutionary Bioinformatics , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 20
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics, 164, 1567-1587
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 21
    • 34447120219 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: dominant markers and null alleles
    • Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes, 7, 574-578
    • (2007) Molecular Ecology Notes , vol.7 , pp. 574-578
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 22
    • 84859261348 scopus 로고    scopus 로고
    • A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response
    • Filiault DL,Maloof JN (2012) A genome-wide association study identifies variants underlying the Arabidopsis thaliana shade avoidance response. PLoS Genetics, 8, e1002589
    • (2012) PLoS Genetics , vol.8
    • Filiault, D.L.1    Maloof, J.N.2
  • 23
    • 79958113038 scopus 로고    scopus 로고
    • A review of the genetic study of the energy crop Miscanthus
    • Głowacka K (2011) A review of the genetic study of the energy crop Miscanthus. Biomass and Bioenergy, 35, 2445-2454
    • (2011) Biomass and Bioenergy , vol.35 , pp. 2445-2454
    • Głowacka, K.1
  • 25
    • 43149120377 scopus 로고    scopus 로고
    • Empirical comparison of simple sequence repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness
    • Hamblin MT, Warburton ML, Buckler ES (2007) Empirical comparison of simple sequence repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. PLoS ONE, 2, e1367
    • (2007) PLoS ONE , vol.2
    • Hamblin, M.T.1    Warburton, M.L.2    Buckler, E.S.3
  • 27
    • 80053587873 scopus 로고    scopus 로고
    • Adaptation to climate across the Arabidopsis thaliana genome
    • Hancock AM, Brachi B, Faure N et al. (2011) Adaptation to climate across the Arabidopsis thaliana genome. Science, 333, 83-86
    • (2011) Science , vol.333 , pp. 83-86
    • Hancock, A.M.1    Brachi, B.2    Faure, N.3
  • 29
    • 0036562272 scopus 로고    scopus 로고
    • Characterization of a genetic resource collection for Miscanthus (Saccharinae, Andropogoneae Poaceae) using AFLP and ISSR PCR
    • Hodkinson TR, Chase MW, Renvoize SA (2002) Characterization of a genetic resource collection for Miscanthus (Saccharinae, Andropogoneae, Poaceae) using AFLP and ISSR PCR. Annals of Botany, 89, 627-636
    • (2002) Annals of Botany , vol.89 , pp. 627-636
    • Hodkinson, T.R.1    Chase, M.W.2    Renvoize, S.A.3
  • 31
    • 0029152589 scopus 로고
    • Multitrait response to selection in Lolium perenne L (perennial ryegrass) populations
    • Humphreys MO (1995) Multitrait response to selection in Lolium perenne L. (perennial ryegrass) populations. Heredity, 74, 510-517
    • (1995) Heredity , vol.74 , pp. 510-517
    • Humphreys, M.O.1
  • 32
    • 19544388557 scopus 로고    scopus 로고
    • Genetic structure of Miscanthus sinensis ssp condensatus (Poaceae) on Miyake Island: implications for revegetation of volcanically devastated sites
    • Iwata H, Kamijo T, Tsumura Y (2005) Genetic structure of Miscanthus sinensis ssp condensatus (Poaceae) on Miyake Island: implications for revegetation of volcanically devastated sites. Ecological Research, 20, 233-238
    • (2005) Ecological Research , vol.20 , pp. 233-238
    • Iwata, H.1    Kamijo, T.2    Tsumura, Y.3
  • 33
    • 18144422130 scopus 로고    scopus 로고
    • Breeding for improved sugar content in sugarcane
    • Jackson PA (2005) Breeding for improved sugar content in sugarcane. Field Crops Research, 92, 277-290
    • (2005) Field Crops Research , vol.92 , pp. 277-290
    • Jackson, P.A.1
  • 34
    • 34547861256 scopus 로고    scopus 로고
    • CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
    • Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics, 23, 1801-1806
    • (2007) Bioinformatics , vol.23 , pp. 1801-1806
    • Jakobsson, M.1    Rosenberg, N.A.2
  • 36
    • 0347991996 scopus 로고    scopus 로고
    • Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites
    • Liu KJ, Goodman M, Muse S, Smith JS, Buckler E, Doebley J (2003) Genetic structure and diversity among maize inbred lines as inferred from DNA microsatellites Genetics, 165, 2117-2128
    • (2003) Genetics , vol.165 , pp. 2117-2128
    • Liu, K.J.1    Goodman, M.2    Muse, S.3    Smith, J.S.4    Buckler, E.5    Doebley, J.6
  • 37
    • 84863341874 scopus 로고    scopus 로고
    • High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis
    • Ma XF, Jensen E, Alexandrov N et al. (2012) High resolution genetic mapping by genome sequencing reveals genome duplication and tetraploid genetic structure of the diploid Miscanthus sinensis. PLoS ONE, 7, e33821
    • (2012) PLoS ONE , vol.7
    • Ma, X.F.1    Jensen, E.2    Alexandrov, N.3
  • 38
    • 33846933954 scopus 로고    scopus 로고
    • Methods for linkage disequilibrium mapping in crops
    • Mackay I, Powell W (2007) Methods for linkage disequilibrium mapping in crops Trends in Plant Science, 12, 57-63
    • (2007) Trends in Plant Science , vol.12 , pp. 57-63
    • Mackay, I.1    Powell, W.2
  • 39
    • 67349118093 scopus 로고    scopus 로고
    • Genetic variation, heritability and correlations of agro-morphological traits in tall fescue (Festuca arundinacea Schreb)
    • Majidi MM, Mirlohi A, Amini F (2009) Genetic variation, heritability and correlations of agro-morphological traits in tall fescue (Festuca arundinacea Schreb.) Euphytica, 167, 323-331
    • (2009) Euphytica , vol.167 , pp. 323-331
    • Majidi, M.M.1    Mirlohi, A.2    Amini, F.3
  • 40
    • 77955482663 scopus 로고    scopus 로고
    • Accurate prediction of genetic values for complex traits by whole-genome resequencing
    • Meuwissen T, Goddard M (2010) Accurate prediction of genetic values for complex traits by whole-genome resequencing. Genetics, 185, 623-631
    • (2010) Genetics , vol.185 , pp. 623-631
    • Meuwissen, T.1    Goddard, M.2
  • 41
    • 22744434580 scopus 로고    scopus 로고
    • The pattern of polymorphism in Arabidopsis thaliana
    • Nordborg M, Hu TT, Ishino Y et al. (2005) The pattern of polymorphism in Arabidopsis thaliana. PLoS Biology, 3, 1289-1299
    • (2005) PLoS Biology , vol.3 , pp. 1289-1299
    • Nordborg, M.1    Hu, T.T.2    Ishino, Y.3
  • 42
    • 70350069921 scopus 로고    scopus 로고
    • Spatial patterns of variation due to natural selection in humans
    • Novembre J, Di Rienzo A (2009) Spatial patterns of variation due to natural selection in humans. Nature Reviews Genetics, 10, 745-755
    • (2009) Nature Reviews Genetics , vol.10 , pp. 745-755
    • Novembre, J.1    Di Rienzo, A.2
  • 43
    • 42649093791 scopus 로고    scopus 로고
    • Interpreting principal component analyses of spatial population genetic variation
    • Novembre J, Stephens M (2008) Interpreting principal component analyses of spatial population genetic variation. Nature Genetics, 40, 646-649
    • (2008) Nature Genetics , vol.40 , pp. 646-649
    • Novembre, J.1    Stephens, M.2
  • 44
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigen analysis
    • Patterson N, Price AL, Reich D (2006) Population structure and eigen analysis. PLoS Genetics, 2, 2074-2093
    • (2006) PLoS Genetics , vol.2 , pp. 2074-2093
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 45
    • 77649215261 scopus 로고    scopus 로고
    • The scale of population structure in Arabidopsis thaliana
    • Platt A, Horton M, Huang YS et al. (2010) The scale of population structure in Arabidopsis thaliana. PLoS Genetics, 6, e1000843
    • (2010) PLoS Genetics , vol.6
    • Platt, A.1    Horton, M.2    Huang, Y.S.3
  • 46
    • 77953811255 scopus 로고    scopus 로고
    • New approaches to population stratification in genome-wide association studies
    • Price AL, Zaitlen NA, Reich D, Patterson N (2010) New approaches to population stratification in genome-wide association studies. Nature Reviews Genetics, 11, 459- 463
    • (2010) Nature Reviews Genetics , vol.11 , pp. 459-463
    • Price, A.L.1    Zaitlen, N.A.2    Reich, D.3    Patterson, N.4
  • 47
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 48
    • 27644559962 scopus 로고    scopus 로고
    • R., Development Core Team
    • R: A language and environment for statistical computing R Foundation for Statistical Computing Vienna, Austria
    • R Development Core Team (2008) R: A language and environment for statistical computing R Foundation for Statistical Computing, Vienna, Austria
    • (2008)
  • 49
    • 84890406847 scopus 로고    scopus 로고
    • Harnessing natural variation in phenotypic and chemotypic traits in Miscanthus for breeding improved bioenergy crops: a review of long term results from perennial energy cropping work at IBERS
    • Robson P, Jensen E, Hodgson E et al. (2011) Harnessing natural variation in phenotypic and chemotypic traits in Miscanthus for breeding improved bioenergy crops: a review of long term results from perennial energy cropping work at IBERS Aspects of Applied Biology, 112, 47-56
    • (2011) Aspects of Applied Biology , vol.112 , pp. 47-56
    • Robson, P.1    Jensen, E.2    Hodgson, E.3
  • 50
    • 84857638695 scopus 로고    scopus 로고
    • Phenotypic variation in senescence in Miscanthus: towards optimising biomass quality and quantity
    • Robson P, Mos M, Clifton-Brown J, Donnison I (2012) Phenotypic variation in senescence in Miscanthus: towards optimising biomass quality and quantity. Bioenergy Research, 5, 95-105
    • (2012) Bioenergy Research , vol.5 , pp. 95-105
    • Robson, P.1    Mos, M.2    Clifton-Brown, J.3    Donnison, I.4
  • 51
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228
    • (1997) Genetics , vol.145 , pp. 1219-1228
    • Rousset, F.1
  • 52
    • 80855147574 scopus 로고    scopus 로고
    • Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region
    • Sagnard F, Deu M, Dembélé D et al. (2011) Genetic diversity, structure, gene flow and evolutionary relationships within the Sorghum bicolor wild-weedy-crop complex in a western African region. Theoretical and Applied Genetics, 123, 1231-1246
    • (2011) Theoretical and Applied Genetics , vol.123 , pp. 1231-1246
    • Sagnard, F.1    Deu, M.2    Dembélé, D.3
  • 53
    • 84867402003 scopus 로고    scopus 로고
    • Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa
    • Slavov GT, DiFazio SP, Martin J et al. (2012) Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa. New Phytologist, 196, 713-725
    • (2012) New Phytologist , vol.196 , pp. 713-725
    • Slavov, G.T.1    DiFazio, S.P.2    Martin, J.3
  • 55
    • 0000862605 scopus 로고
    • The interpretation of population structure by F-statistics with special regard to systems of mating
    • Wright S (1965) The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19, 295-420
    • (1965) Evolution , vol.19 , pp. 295-420
    • Wright, S.1


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