메뉴 건너뛰기




Volumn 449, Issue , 2014, Pages 229-234

An infectious RNA with a hepta-adenosine stretch responsible for programmed -1 ribosomal frameshift derived from a full-length cDNA clone of Hibiscus latent Singapore virus

Author keywords

1 PRF; Biologically active cDNA clone; Downstream pseudoknot; Hepta adenosine stretch; Tobamovirus

Indexed keywords

ADENOSINE DERIVATIVE; COMPLEMENTARY DNA; RNA; VIRUS PROTEIN;

EID: 84890150337     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2013.11.021     Document Type: Article
Times cited : (3)

References (37)
  • 2
    • 0029793858 scopus 로고    scopus 로고
    • The 126- and 183-kilodalton proteins of tobacco mosaic virus, and not their common nucleotide sequence, control mosaic symptom formation in tobacco
    • Bao Y., Carter S.A., Nelson R.S. The 126- and 183-kilodalton proteins of tobacco mosaic virus, and not their common nucleotide sequence, control mosaic symptom formation in tobacco. J. Virol. 1996, 70:6378-6383.
    • (1996) J. Virol. , vol.70 , pp. 6378-6383
    • Bao, Y.1    Carter, S.A.2    Nelson, R.S.3
  • 3
    • 0037143642 scopus 로고    scopus 로고
    • A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA
    • Barry J.K., Miller W.A. A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA. Proc. Natl. Acad. Sci. USA 2002, 99:11133-11138.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 11133-11138
    • Barry, J.K.1    Miller, W.A.2
  • 4
    • 0842304470 scopus 로고    scopus 로고
    • The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy
    • Biswas P., Jiang X., Pacchia A.L., Dougherty J.P., Peltz S.W. The human immunodeficiency virus type 1 ribosomal frameshifting site is an invariant sequence determinant and an important target for antiviral therapy. J. Virol. 2004, 78:2082-2087.
    • (2004) J. Virol. , vol.78 , pp. 2082-2087
    • Biswas, P.1    Jiang, X.2    Pacchia, A.L.3    Dougherty, J.P.4    Peltz, S.W.5
  • 5
    • 0035794245 scopus 로고    scopus 로고
    • An error-prone T7 RNA polymerase mutant generated by directed evolution
    • Brakmann S., Grzeszik S. An error-prone T7 RNA polymerase mutant generated by directed evolution. ChemBioChem 2001, 2:212-219.
    • (2001) ChemBioChem , vol.2 , pp. 212-219
    • Brakmann, S.1    Grzeszik, S.2
  • 6
    • 0024411889 scopus 로고
    • Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot
    • Brierley I., Digard P., Inglis S.C. Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot. Cell 1989, 57:537-547.
    • (1989) Cell , vol.57 , pp. 537-547
    • Brierley, I.1    Digard, P.2    Inglis, S.C.3
  • 7
    • 0026758711 scopus 로고
    • Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal
    • Brierley I., Jenner A.J., Inglis S.C. Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal. J. Mol. Biol. 1992, 227:463-479.
    • (1992) J. Mol. Biol. , vol.227 , pp. 463-479
    • Brierley, I.1    Jenner, A.J.2    Inglis, S.C.3
  • 8
    • 0035787892 scopus 로고    scopus 로고
    • Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting
    • Brierley I., Pennell S. Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting. Cold Spring Harbor Symp. Quant. Biol. 2001, 66:233-248.
    • (2001) Cold Spring Harbor Symp. Quant. Biol. , vol.66 , pp. 233-248
    • Brierley, I.1    Pennell, S.2
  • 9
    • 84857399085 scopus 로고    scopus 로고
    • The 5' UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes
    • Charbonneau J., Gendron K., Ferbeyre G., Brakier-Gingras L. The 5' UTR of HIV-1 full-length mRNA and the Tat viral protein modulate the programmed -1 ribosomal frameshift that generates HIV-1 enzymes. RNA 2012, 18:519-529.
    • (2012) RNA , vol.18 , pp. 519-529
    • Charbonneau, J.1    Gendron, K.2    Ferbeyre, G.3    Brakier-Gingras, L.4
  • 10
    • 29144502178 scopus 로고    scopus 로고
    • Translational control in positive strand RNA plant viruses
    • Dreher T.W., Miller W.A. Translational control in positive strand RNA plant viruses. Virology 2006, 344:185-197.
    • (2006) Virology , vol.344 , pp. 185-197
    • Dreher, T.W.1    Miller, W.A.2
  • 11
    • 38349137949 scopus 로고    scopus 로고
    • The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation
    • Gendron K., Charbonneau J., Dulude D., Heveker N., Ferbeyre G., Brakier-Gingras L. The presence of the TAR RNA structure alters the programmed -1 ribosomal frameshift efficiency of the human immunodeficiency virus type 1 (HIV-1) by modifying the rate of translation initiation. Nucleic Acids Res. 2008, 36:30-40.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 30-40
    • Gendron, K.1    Charbonneau, J.2    Dulude, D.3    Heveker, N.4    Ferbeyre, G.5    Brakier-Gingras, L.6
  • 12
    • 59749098821 scopus 로고    scopus 로고
    • Frameshifting RNA pseudoknots: structure and mechanism
    • Giedroc D.P., Cornish P.V. Frameshifting RNA pseudoknots: structure and mechanism. Virus Res. 2009, 139:193-208.
    • (2009) Virus Res. , vol.139 , pp. 193-208
    • Giedroc, D.P.1    Cornish, P.V.2
  • 13
    • 0026644697 scopus 로고
    • Replication of grapevine fanleaf virus satellite RNA transcripts in Chenopodium quinoa protoplasts
    • Hans F., Fuchs M., Pinck L. Replication of grapevine fanleaf virus satellite RNA transcripts in Chenopodium quinoa protoplasts. J. Gen. Virol. 1992, 73:2517-2523.
    • (1992) J. Gen. Virol. , vol.73 , pp. 2517-2523
    • Hans, F.1    Fuchs, M.2    Pinck, L.3
  • 15
    • 0024277965 scopus 로고
    • Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region
    • Jacks T., Madhani H.D., Masiarz F.R., Varmus H.E. Signals for ribosomal frameshifting in the Rous sarcoma virus gag-pol region. Cell 1988, 55:447-458.
    • (1988) Cell , vol.55 , pp. 447-458
    • Jacks, T.1    Madhani, H.D.2    Masiarz, F.R.3    Varmus, H.E.4
  • 16
    • 2442565653 scopus 로고    scopus 로고
    • Transmission, in planta distribution, and management of Hibiscus latent Fort Pierce virus, a novel tobamovirus isolated from Florida hibiscus
    • Kamenova I., Adkins S. Transmission, in planta distribution, and management of Hibiscus latent Fort Pierce virus, a novel tobamovirus isolated from Florida hibiscus. Plant Dis. 2004, 88:674-679.
    • (2004) Plant Dis. , vol.88 , pp. 674-679
    • Kamenova, I.1    Adkins, S.2
  • 17
    • 78651274466 scopus 로고    scopus 로고
    • The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting
    • Liao P.Y., Choi Y.S., Dinman J.D., Lee K.H. The many paths to frameshifting: kinetic modelling and analysis of the effects of different elongation steps on programmed -1 ribosomal frameshifting. Nucleic Acids Res. 2011, 39:300-312.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 300-312
    • Liao, P.Y.1    Choi, Y.S.2    Dinman, J.D.3    Lee, K.H.4
  • 18
    • 77349100850 scopus 로고    scopus 로고
    • Ribosomal frameshifting in decoding plant viral RNAs
    • Springer, Heidelberg, J.F. Gesteland, F. Raymond (Eds.)
    • Miller W.A., Giedroc D.P. Ribosomal frameshifting in decoding plant viral RNAs. Recoding: Expansion of Decoding Rules Enriches Gene Expression 2010, 193-220. Springer, Heidelberg. J.F. Gesteland, F. Raymond (Eds.).
    • (2010) Recoding: Expansion of Decoding Rules Enriches Gene Expression , pp. 193-220
    • Miller, W.A.1    Giedroc, D.P.2
  • 19
    • 77957286725 scopus 로고    scopus 로고
    • The 126- and/or 183-kDa replicases or their coding regions are responsible both for inefficient local and for systemic movements of Paprika mild mottle virus Japanese strain in tomato plants
    • Mizumoto H., Kimura K., Kiba A., Hikichi Y. The 126- and/or 183-kDa replicases or their coding regions are responsible both for inefficient local and for systemic movements of Paprika mild mottle virus Japanese strain in tomato plants. Virus Res. 2010, 153:205-211.
    • (2010) Virus Res. , vol.153 , pp. 205-211
    • Mizumoto, H.1    Kimura, K.2    Kiba, A.3    Hikichi, Y.4
  • 20
    • 33646557329 scopus 로고    scopus 로고
    • A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting
    • Namy O., Moran S.J., Stuart D.I., Gilbert R.J., Brierley I. A mechanical explanation of RNA pseudoknot function in programmed ribosomal frameshifting. Nature 2006, 441:244-247.
    • (2006) Nature , vol.441 , pp. 244-247
    • Namy, O.1    Moran, S.J.2    Stuart, D.I.3    Gilbert, R.J.4    Brierley, I.5
  • 21
    • 0026355417 scopus 로고
    • Trans complementation of virus-encoded replicase components of tobacco mosaic virus
    • Ogawa T., Watanabe Y., Meshi T., Okada Y. Trans complementation of virus-encoded replicase components of tobacco mosaic virus. Virology 1991, 185:580-584.
    • (1991) Virology , vol.185 , pp. 580-584
    • Ogawa, T.1    Watanabe, Y.2    Meshi, T.3    Okada, Y.4
  • 22
    • 0035958705 scopus 로고    scopus 로고
    • A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site
    • Paul C.P., Barry J.K., Dinesh-Kumar S.P., Brault V., Miller W.A. A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. J. Mol. Biol. 2001, 310:987-999.
    • (2001) J. Mol. Biol. , vol.310 , pp. 987-999
    • Paul, C.P.1    Barry, J.K.2    Dinesh-Kumar, S.P.3    Brault, V.4    Miller, W.A.5
  • 24
    • 72949094274 scopus 로고    scopus 로고
    • Plastocyanin transit peptide interacts with Potato virus X coat protein, while silencing of plastocyanin reduces coat protein accumulation in chloroplasts and symptom severity in host plants
    • Qiao Y., Li H.F., Wong S.M., Fan Z.F. Plastocyanin transit peptide interacts with Potato virus X coat protein, while silencing of plastocyanin reduces coat protein accumulation in chloroplasts and symptom severity in host plants. Mol. Plant Microbe Interact. 2009, 22:1523-1534.
    • (2009) Mol. Plant Microbe Interact. , vol.22 , pp. 1523-1534
    • Qiao, Y.1    Li, H.F.2    Wong, S.M.3    Fan, Z.F.4
  • 25
    • 0032562751 scopus 로고    scopus 로고
    • Template strand switching by T7 RNA polymerase
    • Rong M., Durbin R.K., McAllister W.T. Template strand switching by T7 RNA polymerase. J. Biol. Chem. 1998, 273:10253-10260.
    • (1998) J. Biol. Chem. , vol.273 , pp. 10253-10260
    • Rong, M.1    Durbin, R.K.2    McAllister, W.T.3
  • 26
    • 80155192426 scopus 로고    scopus 로고
    • A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment
    • Sharma V., Firth A.E., Antonov I., Fayet O., Atkins J.F., Borodovsky M., Baranov P.V. A pilot study of bacterial genes with disrupted ORFs reveals a surprising profusion of protein sequence recoding mediated by ribosomal frameshifting and transcriptional realignment. Mol. Biol. Evol. 2011, 28:3195-3211.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 3195-3211
    • Sharma, V.1    Firth, A.E.2    Antonov, I.3    Fayet, O.4    Atkins, J.F.5    Borodovsky, M.6    Baranov, P.V.7
  • 27
    • 14744305454 scopus 로고    scopus 로고
    • A three-nucleotide mutation altering the Maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding
    • Shepherd D.N., Martin D.P., McGivern D.R., Boulton M.I., Thomson J.A., Rybicki E.P. A three-nucleotide mutation altering the Maize streak virus Rep pRBR-interaction motif reduces symptom severity in maize and partially reverts at high frequency without restoring pRBR-Rep binding. J. Gen. Virol. 2005, 86:803-813.
    • (2005) J. Gen. Virol. , vol.86 , pp. 803-813
    • Shepherd, D.N.1    Martin, D.P.2    McGivern, D.R.3    Boulton, M.I.4    Thomson, J.A.5    Rybicki, E.P.6
  • 28
    • 12944252237 scopus 로고    scopus 로고
    • Determination of complete nucleotide sequence of Hibiscus latent Singapore virus: evidence for the presence of an internal poly(A) tract
    • Srinivasan K.G., Min B.E., Ryu K.H., Adkins S., Wong S.M. Determination of complete nucleotide sequence of Hibiscus latent Singapore virus: evidence for the presence of an internal poly(A) tract. Arch. Virol. 2005, 150:153-166.
    • (2005) Arch. Virol. , vol.150 , pp. 153-166
    • Srinivasan, K.G.1    Min, B.E.2    Ryu, K.H.3    Adkins, S.4    Wong, S.M.5
  • 29
    • 0035984634 scopus 로고    scopus 로고
    • Hibiscus virus S is a new subgroup II tobamovirus: evidence from its unique coat protein and movement protein sequences
    • Srinivasan K.G., Narendrakumar R., Wong S.M. Hibiscus virus S is a new subgroup II tobamovirus: evidence from its unique coat protein and movement protein sequences. Arch. Virol. 2002, 147:1585-1598.
    • (2002) Arch. Virol. , vol.147 , pp. 1585-1598
    • Srinivasan, K.G.1    Narendrakumar, R.2    Wong, S.M.3
  • 30
    • 79960940357 scopus 로고    scopus 로고
    • A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus
    • Tajima Y., Iwakawa H., Kaido M., Mise K., Okuno T. A long-distance RNA-RNA interaction plays an important role in programmed -1 ribosomal frameshifting in the translation of p88 replicase protein of Red clover necrotic mosaic virus. Virology 2011, 417:169-178.
    • (2011) Virology , vol.417 , pp. 169-178
    • Tajima, Y.1    Iwakawa, H.2    Kaido, M.3    Mise, K.4    Okuno, T.5
  • 31
    • 0025086640 scopus 로고
    • RNA pseudoknots: translational frameshifting and readthrough on viral RNAs
    • ten Dam E.B., Pleij C.W., Bosch L. RNA pseudoknots: translational frameshifting and readthrough on viral RNAs. Virus Genes 1990, 4:121-136.
    • (1990) Virus Genes , vol.4 , pp. 121-136
    • ten Dam, E.B.1    Pleij, C.W.2    Bosch, L.3
  • 32
    • 54549111418 scopus 로고    scopus 로고
    • KnotInFrame: prediction of -1 ribosomal frameshift events
    • Theis C., Reeder J., Giegerich R. KnotInFrame: prediction of -1 ribosomal frameshift events. Nucleic Acids Res. 2008, 36:6013-6020.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6013-6020
    • Theis, C.1    Reeder, J.2    Giegerich, R.3
  • 33
    • 0033009763 scopus 로고    scopus 로고
    • Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA
    • Tsai C.H., Cheng C.P., Peng C.W., Lin B.Y., Lin N.S., Hsu Y.H. Sufficient length of a poly(A) tail for the formation of a potential pseudoknot is required for efficient replication of bamboo mosaic potexvirus RNA. J. Virol. 1999, 73:2703-2709.
    • (1999) J. Virol. , vol.73 , pp. 2703-2709
    • Tsai, C.H.1    Cheng, C.P.2    Peng, C.W.3    Lin, B.Y.4    Lin, N.S.5    Hsu, Y.H.6
  • 34
    • 4043145009 scopus 로고    scopus 로고
    • Mutation of Phe50 to Ser50 in the 126/183-kDa proteins of Odontoglossum ringspot virus abolishes virus replication but can be complemented and restored by exact reversion
    • Wang H.H., Yu H.H., Wong S.M. Mutation of Phe50 to Ser50 in the 126/183-kDa proteins of Odontoglossum ringspot virus abolishes virus replication but can be complemented and restored by exact reversion. J. Gen. Virol. 2004, 85:2447-2457.
    • (2004) J. Gen. Virol. , vol.85 , pp. 2447-2457
    • Wang, H.H.1    Yu, H.H.2    Wong, S.M.3
  • 35
    • 33644849008 scopus 로고    scopus 로고
    • Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and -1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants
    • Wang X., Wong S.M., Liu D.X. Identification of Hepta- and Octo-Uridine stretches as sole signals for programmed +1 and -1 ribosomal frameshifting during translation of SARS-CoV ORF 3a variants. Nucleic Acids Res. 2006, 34:1250-1260.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 1250-1260
    • Wang, X.1    Wong, S.M.2    Liu, D.X.3
  • 36
    • 0024230701 scopus 로고
    • HIV expression strategies: ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems
    • Wilson W., Braddock M., Adams S.E., Rathjen P.D., Kingsman S.M., Kingsman A.J. HIV expression strategies: ribosomal frameshifting is directed by a short sequence in both mammalian and yeast systems. Cell 1988, 55:1159-1169.
    • (1988) Cell , vol.55 , pp. 1159-1169
    • Wilson, W.1    Braddock, M.2    Adams, S.E.3    Rathjen, P.D.4    Kingsman, S.M.5    Kingsman, A.J.6
  • 37
    • 0033614094 scopus 로고    scopus 로고
    • Elucidation of the genome organization of tobacco mosaic virus
    • Zaitlin M. Elucidation of the genome organization of tobacco mosaic virus. Philos. Trans. R. Soc. London Ser. B 1999, 354:587-591.
    • (1999) Philos. Trans. R. Soc. London Ser. B , vol.354 , pp. 587-591
    • Zaitlin, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.