Automated hippocampal segmentation in patients with epilepsy: Available free online

Epilepsia

Volumn 54, Issue 12, 2013, Pages 2166-2173

  Winston, Gavin P ^a   Cardoso, M Jorge ^b   Williams, Elaine J ^a   Burdett, Jane L ^a   Bartlett, Philippa A ^a   Espak, Miklos ^b   Behr, Charles ^a   Duncan, John S ^a   Ourselin, Sebastien ^b  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

Epilepsy surgery; Hippocampal sclerosis; Hippocampal segmentation; Magnetic resonance imaging

Indexed keywords

ADULT; ALGORITHM; ARTICLE; AUTOMATED HIPPOCAMPAL SEGMENTATION; AUTOMATION; BRAIN SIZE; CONTROLLED STUDY; EPILEPSY; FEMALE; HIPPOCAMPAL SCLEROSIS; HUMAN; MAJOR CLINICAL STUDY; MALE; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; NUCLEAR MAGNETIC RESONANCE SCANNER; PRIORITY JOURNAL; VOLUMETRY;

EID: 84890127731     PISSN: 00139580     EISSN: 15281167     Source Type: Journal    
DOI: 10.1111/epi.12408     Document Type: Article

References (30)

1. Apostolova LG, Dinov ID, Dutton RA, Hayashi KM, Toga AW, Cummings JL, Thompson PM,. (2006) 3D comparison of hippocampal atrophy in amnestic mild cognitive impairment and Alzheimer's disease. Brain 129: 2867-2873.
2. Avants BB, Yushkevich P, Pluta J, Minkoff D, Korczykowski M, Detre J, Gee JC,. (2010) The optimal template effect in hippocampus studies of diseased populations. Neuroimage 49: 2457-2466.
3. Bernasconi N, Bernasconi A, Caramanos Z, Antel SB, Andermann F, Arnold DL,. (2003) Mesial temporal damage in temporal lobe epilepsy: a volumetric MRI study of the hippocampus, amygdala and parahippocampal region. Brain 126: 462-469.
4. Bernasconi N, Kinay D, Andermann F, Antel S, Bernasconi A,. (2005) Analysis of shape and positioning of the hippocampal formation: an MRI study in patients with partial epilepsy and healthy controls. Brain 128: 2442-2452.
5. Bremner JD, Narayan M, Anderson ER, Staib LH, Miller HL, Charney DS,. (2000) Hippocampal volume reduction in major depression. Am J Psychiatry 157: 115-118.
6. Cardoso MJ, Leung K, Modat M, Keihaninejad S, Cash D, Barnes J, Fox NC, Ourselin S,. (2013) STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation. Med Image Anal 17: 671-684.
7. Carmichael OT, Aizenstein HA, Davis SW, Becker JT, Thompson PM, Meltzer CC, Liu Y,. (2005) Atlas-based hippocampus segmentation in Alzheimer's disease and mild cognitive impairment. Neuroimage 27: 979-990.
8. Chupin M, Hammers A, Liu RS, Colliot O, Burdett J, Bardinet E, Duncan JS, Garnero L, Lemieux L,. (2009) Automatic segmentation of the hippocampus and the amygdala driven by hybrid constraints: method and validation. Neuroimage 46: 749-761.
9. Cook MJ, Fish DR, Shorvon SD, Straughan K, Stevens JM,. (1992) Hippocampal volumetric and morphometric studies in frontal and temporal lobe epilepsy. Brain 115 (Pt 4): 1001-1015.
10. Coupe P, Eskildsen SF, Manjon JV, Fonov VS, Collins DL,. (2012) Simultaneous segmentation and grading of anatomical structures for patient's classification: application to Alzheimer's disease. Neuroimage 59: 3736-3747.
11. Fischl B, Salat DH, Busa E, Albert M, Dieterich M, Haselgrove C, van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris N, Rosen B, Dale AM,. (2002) Whole brain segmentation: automated labeling of neuroanatomical structures in the human brain. Neuron 33: 341-355.
12. Free SL, Bergin PS, Fish DR, Cook MJ, Shorvon SD, Stevens JM,. (1995) Methods for normalization of hippocampal volumes measured with MR. AJNR Am J Neuroradiol 16: 637-643.
13. Frisoni GB, Jack CR,. (2011) Harmonization of magnetic resonance-based manual hippocampal segmentation: a mandatory step for wide clinical use. Alzheimers Dement 7: 171-174.
14. Hammers A, Heckemann R, Koepp MJ, Duncan JS, Hajnal JV, Rueckert D, Aljabar P,. (2007) Automatic detection and quantification of hippocampal atrophy on MRI in temporal lobe epilepsy: a proof-of-principle study. Neuroimage 36: 38-47.
15. Heckemann RA, Hajnal JV, Aljabar P, Rueckert D, Hammers A,. (2006) Automatic anatomical brain MRI segmentation combining label propagation and decision fusion. Neuroimage 33: 115-126.
16. Hogan RE, Mark KE, Choudhuri I, Wang L, Joshi S, Miller MI, Bucholz RD,. (2000) Magnetic resonance imaging deformation-based segmentation of the hippocampus in patients with mesial temporal sclerosis and temporal lobe epilepsy. J Digit Imaging 13: 217-218.
17. Jafari-Khouzani K, Elisevich KV, Patel S, Soltanian-Zadeh H,. (2011) Dataset of magnetic resonance images of nonepileptic subjects and temporal lobe epilepsy patients for validation of hippocampal segmentation techniques. Neuroinformatics 9: 335-346.
18. Kim H, Chupin M, Colliot O, Bernhardt BC, Bernasconi N, Bernasconi A,. (2012) Automatic hippocampal segmentation in temporal lobe epilepsy: impact of developmental abnormalities. Neuroimage 59: 3178-3186.
19. Konrad C, Ukas T, Nebel C, Arolt V, Toga AW, Narr KL,. (2009) Defining the human hippocampus in cerebral magnetic resonance images-an overview of current segmentation protocols. Neuroimage 47: 1185-1195.
20. Lemieux L, Liu RS, Duncan JS,. (2000) Hippocampal and cerebellar volumetry in serially acquired MRI volume scans. Magn Reson Imaging 18: 1027-1033.
21. Modat M, Ridgway GR, Taylor ZA, Lehmann M, Barnes J, Hawkes DJ, Fox NC, Ourselin S,. (2010) Fast free-form deformation using graphics processing units. Comput Methods Programs Biomed 98: 278-284.
22. Pardoe HR, Pell GS, Abbott DF, Jackson GD,. (2009) Hippocampal volume assessment in temporal lobe epilepsy: how good is automated segmentation? Epilepsia 50: 2586-2592.
23. Pluta J, Avants BB, Glynn S, Awate S, Gee JC, Detre JA,. (2009) Appearance and incomplete label matching for diffeomorphic template based hippocampus segmentation. Hippocampus 19: 565-571.
24. Rohlfing T, Brandt R, Menzel R, Maurer CR Jr,. (2004) Evaluation of atlas selection strategies for atlas-based image segmentation with application to confocal microscopy images of bee brains. Neuroimage 21: 1428-1442.
25. Schramm J, Clusmann H,. (2008) The surgery of epilepsy. Neurosurgery 62 (Suppl. 2): 463-481.
26. Tanskanen P, Veijola JM, Piippo UK, Haapea M, Miettunen JA, Pyhtinen J, Bullmore ET, Jones PB, Isohanni MK,. (2005) Hippocampus and amygdala volumes in schizophrenia and other psychoses in the Northern Finland 1966 birth cohort. Schizophr Res 75: 283-294.
27. Van Paesschen W,. (2004) Qualitative and quantitative imaging of the hippocampus in mesial temporal lobe epilepsy with hippocampal sclerosis. Neuroimaging Clin N Am 14: 373-400, vii.
28. Warfield SK, Zou KH, Wells WM,. (2004) Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging 23: 903-921.
29. Watson C, Jack CR Jr, Cendes F,. (1997) Volumetric magnetic resonance imaging. Clinical applications and contributions to the understanding of temporal lobe epilepsy. Arch Neurol 54: 1521-1531.
30. Wu WC, Huang CC, Chung HW, Liou M, Hsueh CJ, Lee CS, Wu ML, Chen CY,. (2005) Hippocampal alterations in children with temporal lobe epilepsy with or without a history of febrile convulsions: evaluations with MR volumetry and proton MR spectroscopy. AJNR Am J Neuroradiol 26: 1270-1275.