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Volumn 21, Issue , 2014, Pages 214-219

Genetic analysis of G12P[8] rotaviruses detected in the largest U.S. G12 genotype outbreak on record

Author keywords

Rotavirus; USA; Vaccine; VP4 protein; VP7 protein

Indexed keywords

AMINO ACID; PROTEIN VP4; PROTEIN VP7; CAPSID PROTEIN; ROTAVIRUS VACCINE; VIRUS ANTIGEN; VP4 PROTEIN, ROTAVIRUS; VP7 PROTEIN, ROTAVIRUS;

EID: 84890027457     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2013.11.004     Document Type: Article
Times cited : (25)

References (47)
  • 1
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative
    • Anisimova M., Gascuel O. Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. Syst. Biol. 2006, 55:539-552.
    • (2006) Syst. Biol. , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 2
    • 73349096317 scopus 로고    scopus 로고
    • Meeting of the Strategic Advisory Group of Experts on Immunization, October 2009 - conclusions and recommendations
    • Anonymous
    • Anonymous Meeting of the Strategic Advisory Group of Experts on Immunization, October 2009 - conclusions and recommendations. Wkly Epidemiol. Rec. 2009, 84:517-532.
    • (2009) Wkly Epidemiol. Rec. , vol.84 , pp. 517-532
  • 3
    • 0029793570 scopus 로고    scopus 로고
    • Trypsin activation pathway of rotavirus infectivity
    • Arias C.F., Romero P., Alvarez V., Lopez S. Trypsin activation pathway of rotavirus infectivity. J. Virol. 1996, 70:5832-5839.
    • (1996) J. Virol. , vol.70 , pp. 5832-5839
    • Arias, C.F.1    Romero, P.2    Alvarez, V.3    Lopez, S.4
  • 8
    • 79851471497 scopus 로고    scopus 로고
    • Immune responses to rotavirus infection and vaccination and associated correlates of protection
    • Desselberger U., Huppertz H.I. Immune responses to rotavirus infection and vaccination and associated correlates of protection. J. Infect. Dis. 2011, 203:188-195.
    • (2011) J. Infect. Dis. , vol.203 , pp. 188-195
    • Desselberger, U.1    Huppertz, H.I.2
  • 9
    • 84865373339 scopus 로고    scopus 로고
    • Selection and evolutionary analysis in the nonstructural protein NSP2 of rotavirus A
    • Donker N.C., Kirkwood C.D. Selection and evolutionary analysis in the nonstructural protein NSP2 of rotavirus A. Infect. Genet. Evol. 2012, 12:1355-1361.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 1355-1361
    • Donker, N.C.1    Kirkwood, C.D.2
  • 10
    • 0036500085 scopus 로고    scopus 로고
    • The rhesus rotavirus VP4 sialic acid binding domain has a galectin fold with a novel carbohydrate binding site
    • Dormitzer P.R., Sun Z.Y., Wagner G., Harrison S.C. The rhesus rotavirus VP4 sialic acid binding domain has a galectin fold with a novel carbohydrate binding site. EMBO J. 2002, 21:885-897.
    • (2002) EMBO J. , vol.21 , pp. 885-897
    • Dormitzer, P.R.1    Sun, Z.Y.2    Wagner, G.3    Harrison, S.C.4
  • 11
    • 0000730162 scopus 로고    scopus 로고
    • Rotaviruses and their replication
    • Lippincott-Raven, Philadelphia PA, B.N. Fields, D.M. Knipe, P.M. Howley, R.M. Chanock, J.L. Melnick, T.P. Monath, B. Roizman, S.E. Straus (Eds.)
    • Estes M.K. Rotaviruses and their replication. Fields Virology 1996, 1625-1655. Lippincott-Raven, Philadelphia PA. third ed. B.N. Fields, D.M. Knipe, P.M. Howley, R.M. Chanock, J.L. Melnick, T.P. Monath, B. Roizman, S.E. Straus (Eds.).
    • (1996) Fields Virology , pp. 1625-1655
    • Estes, M.K.1
  • 12
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses
    • Lippincott Williams & Wilkins, D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.)
    • Estes M.K., Kapikian A.Z. Rotaviruses. Fields Virology 2007, 1917-1974. Lippincott Williams & Wilkins. fifth ed. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
    • (2007) Fields Virology , pp. 1917-1974
    • Estes, M.K.1    Kapikian, A.Z.2
  • 13
    • 62849100236 scopus 로고    scopus 로고
    • Phylogenetic analysis of novel G12 rotaviruses in the United States: a molecular search for the origin of a new strain
    • Freeman M.M., Kerin T., Hull J., Teel E., Esona M., Parashar U., Glass R.I., Gentsch J.R. Phylogenetic analysis of novel G12 rotaviruses in the United States: a molecular search for the origin of a new strain. J. Med. Virol. 2009, 81:736-746.
    • (2009) J. Med. Virol. , vol.81 , pp. 736-746
    • Freeman, M.M.1    Kerin, T.2    Hull, J.3    Teel, E.4    Esona, M.5    Parashar, U.6    Glass, R.I.7    Gentsch, J.R.8
  • 15
    • 0031901344 scopus 로고    scopus 로고
    • Cleavage of rhesus rotavirus VP4 after arginine 247 is essential for rotavirus-like particle-induced fusion from without
    • Gilbert J.M., Greenberg H.B. Cleavage of rhesus rotavirus VP4 after arginine 247 is essential for rotavirus-like particle-induced fusion from without. J. Virol. 1998, 72:5323-5327.
    • (1998) J. Virol. , vol.72 , pp. 5323-5327
    • Gilbert, J.M.1    Greenberg, H.B.2
  • 16
    • 0006027919 scopus 로고
    • Conservation of amino acid sequence of VP8 and cleavage region of 84-kDa outer capsid protein among rotaviruses recovered from asymptomatic neonatal infection
    • Gorziglia M., Hoshino Y., Buckler-White A., Blumentals I., Glass R., Flores J., Kapikian A.Z., Chanock R.M. Conservation of amino acid sequence of VP8 and cleavage region of 84-kDa outer capsid protein among rotaviruses recovered from asymptomatic neonatal infection. Proc. Natl. Acad. Sci. USA 1986, 83:7039-7043.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 7039-7043
    • Gorziglia, M.1    Hoshino, Y.2    Buckler-White, A.3    Blumentals, I.4    Glass, R.5    Flores, J.6    Kapikian, A.Z.7    Chanock, R.M.8
  • 17
    • 0025108292 scopus 로고
    • Neutralization epitopes on rotavirus SA11 4fM outer capsid proteins
    • Gorziglia M., Larralde G., Ward R.L. Neutralization epitopes on rotavirus SA11 4fM outer capsid proteins. J. Virol. 1990, 64:4534-4539.
    • (1990) J. Virol. , vol.64 , pp. 4534-4539
    • Gorziglia, M.1    Larralde, G.2    Ward, R.L.3
  • 18
    • 74549125386 scopus 로고    scopus 로고
    • SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building
    • Gouy M., Guindon S., Gascuel O., Guindon S., Gascuel O. SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Biol. Evol. 2010, 27:221-224.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 221-224
    • Gouy, M.1    Guindon, S.2    Gascuel, O.3    Guindon, S.4    Gascuel, O.5
  • 19
    • 0036058274 scopus 로고    scopus 로고
    • Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses
    • Griffin D.D., Nakagomi T., Hoshino Y., Nakagomi O., Kirkwood C.D., Parashar U.D., Glass R.I., Gentsch J.R. Characterization of nontypeable rotavirus strains from the United States: identification of a new rotavirus reassortant (P2A[6], G12) and rare P3[9] strains related to bovine rotaviruses. Virology 2002, 294:256-269.
    • (2002) Virology , vol.294 , pp. 256-269
    • Griffin, D.D.1    Nakagomi, T.2    Hoshino, Y.3    Nakagomi, O.4    Kirkwood, C.D.5    Parashar, U.D.6    Glass, R.I.7    Gentsch, J.R.8
  • 20
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 23
    • 0029689241 scopus 로고    scopus 로고
    • Human rotavirus VP4 contains strain-specific, serotype-specific and cross-reactive neutralization sites
    • Kirkwood C.D., Bishop R.F., Coulson B.S. Human rotavirus VP4 contains strain-specific, serotype-specific and cross-reactive neutralization sites. Arch. Virol. 1996, 141:587-600.
    • (1996) Arch. Virol. , vol.141 , pp. 587-600
    • Kirkwood, C.D.1    Bishop, R.F.2    Coulson, B.S.3
  • 24
    • 71649089752 scopus 로고    scopus 로고
    • Rotavirus strain surveillance - an Australian perspective of strains causing disease in hospitalised children from 1997 to 2007
    • Kirkwood C.D., Boniface K., Bogdanovic-Sakran N., Masendycz P., Barnes G.L., Bishop R.F. Rotavirus strain surveillance - an Australian perspective of strains causing disease in hospitalised children from 1997 to 2007. Vaccine 2009, 27(Suppl. 5):F102-107.
    • (2009) Vaccine , vol.27 , Issue.SUPPL. 5
    • Kirkwood, C.D.1    Boniface, K.2    Bogdanovic-Sakran, N.3    Masendycz, P.4    Barnes, G.L.5    Bishop, R.F.6
  • 25
    • 0022006581 scopus 로고
    • Primary structure of the cleavage site associated with trypsin enhancement of rotavirus SA11 infectivity
    • Lopez S., Arias C.F., Bell J.R., Strauss J.H., Espejo R.T. Primary structure of the cleavage site associated with trypsin enhancement of rotavirus SA11 infectivity. Virology 1985, 144:11-19.
    • (1985) Virology , vol.144 , pp. 11-19
    • Lopez, S.1    Arias, C.F.2    Bell, J.R.3    Strauss, J.H.4    Espejo, R.T.5
  • 26
    • 0022477384 scopus 로고
    • Conservation in rotaviruses of the protein region containing the two sites associated with trypsin enhancement of infectivity
    • Lopez S., Arias C.F., Mendez E., Espejo R.T. Conservation in rotaviruses of the protein region containing the two sites associated with trypsin enhancement of infectivity. Virology 1986, 154:224-227.
    • (1986) Virology , vol.154 , pp. 224-227
    • Lopez, S.1    Arias, C.F.2    Mendez, E.3    Espejo, R.T.4
  • 27
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens J., Heylen E., Zeller M., Rahman M., Lemey P., Van Ranst M. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 2010, 27:2431-2436.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    Van Ranst, M.6
  • 29
    • 0031964298 scopus 로고    scopus 로고
    • Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9
    • Maunula L., von Bonsdorff C.H. Short sequences define genetic lineages: phylogenetic analysis of group A rotaviruses based on partial sequences of genome segments 4 and 9. J. Gen. Virol. 1998, 79(Pt 2):321-332.
    • (1998) J. Gen. Virol. , vol.79 , Issue.PART 2 , pp. 321-332
    • Maunula, L.1    von Bonsdorff, C.H.2
  • 35
    • 70249084927 scopus 로고    scopus 로고
    • Human infection with G12 rotaviruses, Germany
    • Pietsch C., Liebert U.G. Human infection with G12 rotaviruses, Germany. Emerg. Infect. Dis. 2009, 15:1512-1515.
    • (2009) Emerg. Infect. Dis. , vol.15 , pp. 1512-1515
    • Pietsch, C.1    Liebert, U.G.2
  • 36
    • 17744395033 scopus 로고    scopus 로고
    • Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
    • Pond S.L.K., Frost S.D.W. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics (Oxford, England) 2005, 21:2531-2533.
    • (2005) Bioinformatics (Oxford, England) , vol.21 , pp. 2531-2533
    • Pond, S.L.K.1    Frost, S.D.W.2
  • 41
    • 68749121935 scopus 로고    scopus 로고
    • Adaptive evolution of rotavirus VP7 and NSP4 genes in different species
    • Song X.-f., Hao Y. Adaptive evolution of rotavirus VP7 and NSP4 genes in different species. Comp. Biol. Chem. 2009, 33:344-349.
    • (2009) Comp. Biol. Chem. , vol.33 , pp. 344-349
    • Song, X.-F.1    Hao, Y.2
  • 42
    • 77954743785 scopus 로고    scopus 로고
    • Mutational effects and the evolution of new protein functions
    • Soskine M., Tawfik D.S. Mutational effects and the evolution of new protein functions. Nat. Rev. Genet. 2010, 11:572-582.
    • (2010) Nat. Rev. Genet. , vol.11 , pp. 572-582
    • Soskine, M.1    Tawfik, D.S.2
  • 43
    • 0025007083 scopus 로고
    • Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity
    • Taniguchi K., Urasawa T., Kobayashi N., Gorziglia M., Urasawa S. Nucleotide sequence of VP4 and VP7 genes of human rotaviruses with subgroup I specificity and long RNA pattern: implication for new G serotype specificity. J. Virol. 1990, 64:5640-5644.
    • (1990) J. Virol. , vol.64 , pp. 5640-5644
    • Taniguchi, K.1    Urasawa, T.2    Kobayashi, N.3    Gorziglia, M.4    Urasawa, S.5
  • 44
    • 84871296795 scopus 로고    scopus 로고
    • Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses
    • Trojnar E., Sachsenröder J., Twardziok S., Reetz J., Otto P., Johne R. Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J. Gen. Virol. 2013, 94:136-142.
    • (2013) J. Gen. Virol. , vol.94 , pp. 136-142
    • Trojnar, E.1    Sachsenröder, J.2    Twardziok, S.3    Reetz, J.4    Otto, P.5    Johne, R.6
  • 47
    • 84857438141 scopus 로고    scopus 로고
    • Genetic analyses reveal differences in the VP7 and VP4 antigenic epitopes between human rotaviruses circulating in Belgium and rotaviruses in Rotarix and RotaTeq
    • Epub 2011 Dec 2021
    • Zeller M., Patton J.T., Heylen E., De Coster S., Ciarlet M., Van Ranst M., Matthijnssens J. Genetic analyses reveal differences in the VP7 and VP4 antigenic epitopes between human rotaviruses circulating in Belgium and rotaviruses in Rotarix and RotaTeq. J. Clin. Microbiol. 2012, 50:966-976. Epub 2011 Dec 2021.
    • (2012) J. Clin. Microbiol. , vol.50 , pp. 966-976
    • Zeller, M.1    Patton, J.T.2    Heylen, E.3    De Coster, S.4    Ciarlet, M.5    Van Ranst, M.6    Matthijnssens, J.7


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