Exploring heterogeneous biological databases: Tools and applications

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 1377 LNCS, Issue , 1998, Pages 499-513

  Kosky, Anthony S ^a   Chen, I Min A ^a   Markowitz, Victor M ^a   Szeto, Ernest ^a  

^a Gene Logic Inc   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

QUERY PROCESSING; SEMANTICS;

BIOLOGICAL DATABASE; DATABASE SCHEMAS; HETEROGENEOUS BIOLOGICAL DATABASE; MULTI-DATABASE SYSTEMS; MULTIDATABASES; PROTOCOL MODEL; SCIENTIFIC APPLICATIONS; TOOLS AND APPLICATIONS;

QUERY LANGUAGES;

EID: 84889776752     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/bfb0101005     Document Type: Conference Paper

References (13)

1. Buneman, P., Davidson, S., Hart, K., Overton, C., and Wong, L., A Data Transformation System for Biological Data Sources. In Proc. of the 21st Int. Conference on Very Large Data Bases, pp. 158-169, ]995.
2. Buneman, P., Naqvi, S., Tannen, V., Wong, L., Principles of Programming with Complex Objects and Collection Types. In Theoretical Computer Science 149, pp 3 48, 1995.
3. Chen, I.A., and Markowitz, V.M., An Overview of the Object-Protocol Model (OPM) and OPM Data Management Tools. Information Systems, 20(5), pp. 393- 418, 1995.
4. Chen, I.A., and Markowitz, V.M., OPM Schema Translator 4, Reference Manual, Technical Report LBL-35582, 1996.
5. Chen, I.A., Kosky, A., Markowitz, V.M., and Szeto, E., The OPM Query Translator, Technical Report LBL-33706, 1996.
6. Chen, I.A., Kosky, A.S., Markowitz, V.M., and Szeto, E., Constructing and Maintaining Scientific Database Views, Proc. of the 9th Conference on Scientific and Statistical Database Management, IEEE Computer Society, pp. 237- 248, 1997.
7. Etzold, T., and Argos, P., SRS, An Indexing and Retrieval Tools for Flat File Data Libraries. Computer Applications of Biosciences, 9, 1, pp. 49-57, 1993. See also http://www.embl-heidelberg.de/srs/srsc. (Pubitemid 23081317)
8. Fasman, K.H., Letovsky, S.I., Cottingham, R.W., and Kingsbury, D.T., Improvements to the GDB Human Genome Data Base. Nucleic Acids Research, Vol. 24, No. 1, pp. 57-63, 1996. See also http://wwwtest.gdb.org/gdb/about.html.
9. Markowitz, V.M., Chen, I.A., Kosky, A.S., and Szeto, E., Facilities for Exploring Molecular Biology Databases on the Web: A Comparative Study. Pacific Symposium on Biocomputing'97, Altman, R.B.& al (eds) World Scientific, 1997.
10. The Object Database Standard: ODMG-93, Cattell, R. G. G. (ed), Morgan Kaufmann, 1996.
11. Programmer's Reference. National Center for Biotechnology Information, Bethesda, Maryland, November 1991. See also the ASN.1 homepage at http://www.inria.fr:80/rodeo/personnel/hoschka/asnl.html.
12. Ritter, O. The Integrated Genomic Database. In Computational Methods in Genome Research (S. Suhai, ed.), pp. 57-73, Plenum, 1994.
13. Sheth, A.P., and Larson, J.A. Federated Database Systems for Managing Distributed, Heterogeneous, and Autonomous Databases. A CM Computing Surveys, 22(3), pp. 183-236, 1990.