In vitro and in vivo characterization of a novel insect decaprenyl diphosphate synthase: A two-major step catalytic mechanism is proposed

Biochemical and Biophysical Research Communications

Volumn 442, Issue 1-2, 2013, Pages 105-111

  Zhang, Hao ^a   Li, Zheng Xi ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Coenzyme Q; Decaprenyl diphosphate synthase; In vitro and in vivo enzymatic assay; Polyprenyl diphosphate synthase; Ubiquinone

Indexed keywords

COMPLEMENTARY DNA; GERANYLGERANYL PYROPHOSPHATE; PYROPHOSPHATE; SYNTHETASE; UBIQUINONE;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; COTTON APHID; ENZYMATIC ASSAY; ENZYME ACTIVITY; ESCHERICHIA COLI; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; IN VITRO STUDY; IN VIVO STUDY; ISOELECTRIC POINT; MASS FRAGMENTOGRAPHY; MOLECULAR CLONING; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT;

APHIDIDAE; ESCHERICHIA COLI; HEXAPODA; MAMMALIA;

COENZYME Q; COQ; DECAPRENYL DIPHOSPHATE; DECAPRENYL DIPHOSPHATE SYNTHASE; DIMETHYLALLYL DIPHOSPHATE; DL-1,4-DITHIOTHREITOL; DMAPP; DPP; DPPS; DTT; FARM; FARNESYL DIPHOSPHATE; FARNESYL DIPHOSPHATE SYNTHASE; FPP; FPPS; GERANYL DIPHOSPHATE; GERANYLGERANYL DIPHOSPHATE; GERANYLGERANYL DIPHOSPHATE SYNTHASE; GGPP; GGPPS; GLUTATHIONE S-TRANSFERASE; GPP; GST; HEPPP; HEPPPS; HEPTAPRENYL DIPHOSPHATE; HEPTAPRENYL DIPHOSPHATE SYNTHASE; HEXAPRENYL DIPHOSPHATE; HEXAPRENYL DIPHOSPHATE SYNTHASE; HEXPP; HEXPPS; IN VITRO AND IN VIVO ENZYMATIC ASSAY; IPP; IPTG; ISOPENTENYL DIPHOSPHATE; ISOPROPYL THIO-Β-D-GALACTOSIDE; OCTAPRENYL DIPHOSPHATE; OCTAPRENYL DIPHOSPHATE SYNTHASE; OPP; OPPS; PDDS; POLYPRENYL DIPHOSPHATE SYNTHASE; SARM; SOLANESYL DIPHOSPHATE; SOLANESYL DIPHOSPHATE SYNTHASE; SPP; SPPS; THE FIRST ASPARTATE-RICH MOTIF; THE SECOND ASPARTATE -RICH MOTIF; UBIQUINONE; UQ;

ALKYL AND ARYL TRANSFERASES; ANIMALS; APHIDS; CATALYSIS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CLONING, MOLECULAR; GAS CHROMATOGRAPHY-MASS SPECTROMETRY; INSECT PROTEINS; PHYLOGENY; PROTEIN SUBUNITS; RECOMBINANT PROTEINS; UBIQUINONE;

EID: 84889680177     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2013.11.025     Document Type: Article

References (27)

1. T. Koyama Molecular analysis of prenyl chain elongating enzymes Biosci. Biotechnol. Biochem. 63 1999 1671 1676
2. K. Ogura, and T. Koyama Enzymatic aspects of isoprenoid chain elongation Chem. Rev. 98 1998 1263 1276
3. K. Okada, K. Suzuki, Y. Kamiya, X.F. Zhu, S. Fujisaki, Y. Nishimura, T. Nishino, T. Nakagawa, M. Kawamukai, and H. Matsuda Polyprenyl diphosphate synthase essentially defines the length of the side chain of ubiquinone Biochim. Biophys. Acta 1302 1996 217 223
4. L. Ernster, and G. Dallner Biochemical, physiological and medical aspects of ubiquinone function Biochim. Biophys. Acta 1271 1995 195 204
5. S. Ohnuma, T. Koyama, and K. Ogura Chain length distribution of the products formed in solanesyl diphosphate synthase reaction J. Biochem. 112 1992 743 749
6. R. Saiki, A. Nagata, N. Uchida, T. Kainou, H. Matsuda, and M. Kawamukai Fission yeast decaprenyl diphosphate synthase consists of Dps1 and the newly characterized Dlp1 protein in a novel heterotetrameric structure Eur. J. Biochem. 270 2003 4113 4121
7. R. Saiki, A. Nagata, T. Kainou, H. Matsuda, and M. Kawamukai Characterization of solanesyl and decaprenyl diphosphate synthases in mice and humans FEBS J. 272 2005 5606 5622
8. K. Hirooka, T. Bamba, E. Fukusaki, and A. Kobayashi Cloning and kinetic characterization of Arabidopsis thaliana solanesyl diphosphate synthase Biochem. J. 370 2003 679 686
9. K.-i. Asai, S. Fujisaki, Y. Nishimura, T. Nishino, K. Okada, T. Nakagawa, M. Kawamukai, and H. Matsuda The identification of Escherichia coli ispB (cel) gene encoding the octaprenyl diphosphate synthase Biochem. Biophys. Res. Commun. 202 1994 340 345
10. K. Okada, Y. Kamiya, X. Zhu, K. Suzuki, K. Tanaka, T. Nakagawa, H. Matsuda, and M. Kawamukai Cloning of the sdsA gene encoding solanesyl diphosphate synthase from Rhodobacter capsulatus and its functional expression in Escherichia coli and Saccharomyces cerevisiae J. Bacteriol. 179 1997 5992 5998
11. K. Okada, T. Kainou, H. Matsuda, and M. Kawamukai Biological significance of the side chain length of ubiquinone in Saccharomyces cerevisiae FEBS Lett. 431 1998 241 244
12. D. Zhang, B. Shrestha, Z. Li, and T. Tan Ubiquinone-10 production using Agrobacterium tumefaciens dps gene in Escherichia coli by coexpression system Mol. Biotechnol. 35 2007 1 14
13. T.Z. Cui, T. Kaino, and M. Kawamukai A subunit of decaprenyl diphosphate synthase stabilizes octaprenyl diphosphate synthase in Escherichia coli by forming a high-molecular weight complex FEBS Lett. 584 2010 652 656
14. D. Kaur, P.J. Brennan, and D.C. Crick Decaprenyl diphosphate synthesis in Mycobacterium tuberculosis J. Bacteriol. 186 2004 7564 7570
15. K. Ohara, K. Sasaki, and K. Yazaki Two solanesyl diphosphate synthases with different subcellular localizations and their respective physiological roles in Oryza sativa J. Exp. Bot. 61 2010 2683 2692
16. A. Chen, P.A. Kroon, and D.D. Pulter Isoprenyl diphosphate synthases: protein sequence comparisons, a phylogenetic tree, and predictions of secondary structure Protein Sci. 3 1994 600 607
17. L.C. Tarshis, P.J. Proteau, B.A. Kellogg, J.C. Sacchettini, and C.D. Pulter Regulation of product chain length by isoprenyl diphosphate synthases Proc. Natl. Acad. Sci. USA 93 1996 15018 15023
18. C.C. Burke, M.R. Wildung, and R. Croteau Geranyl diphosphate synthase: cloning, expression, and characterization of this prenyltransferase as a heterodimer Proc. Natl. Acad. Sci. USA 96 1999 13062 13067
19. A. Koike-Takeshita, T. Koyama, S. Obata, and K. Ogura Molecular cloning and nucleotide sequences of the genes for two essential proteins constituting a novel enzyme system for heptaprenyl diphosphate synthesis J. Biol. Chem. 270 1995 18396 18400
20. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
21. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony method Mol. Biol. Evol. 28 2011 2731 2739
22. G.Y. Ma, X.F. Sun, Y.L. Zhang, Z.X. Li, and Z.R. Shen Molecular cloning and characterization of a prenyltransferase from the cotton aphid, Aphis gossypii Insect Biochem. Mol. Biol. 40 2010 552 561
23. M.M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein dye binding Anal. Biochem. 72 1976 248 254
24. X.F. Sun, and Z.X. Li In silico and in vitro analyses identified three amino acid residues critical to the catalysis of two aphid farnesyl diphosphate synthases Protein J. 31 2012 417 424
25. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual second ed. 1989 Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York
26. G. Lenaz Coenzyme Q: Biochemistry, Bioenergetics, and Clinical Applications of Ubiquinone 1985 John Wiley & Sons New York
27. K. Hirooka, Y. Izumi, C. An, Y. Nakazawa, E. Fukusaki, and A. Kobayashi Functional analysis of two solanesyl diphosphate synthases from Arabidopsis thaliana Biosci. Biotechnol. Biochem. 69 2005 592 601