Spatial registration for functional near-infrared spectroscopy: From channel position on the scalp to cortical location in individual and group analyses

NeuroImage

Volumn 85, Issue , 2014, Pages 92-103

  Tsuzuki, Daisuke ^a,b   Dan, Ippeita ^a,b  

^a JICHI MEDICAL UNIVERSITY   (Japan)

^b CHUO UNIVERSITY   (Japan)

Author keywords

3D digitizer; International 10 20 system; Normalization; Optical topography; Stereotactic coordinate system; Talairach system

Indexed keywords

ANATOMICAL CONCEPTS; AUTOMATIC ANATOMICAL LABELING; BRAIN REGION; COMPUTER AIDED DESIGN; COMPUTER PROGRAM; DATA BASE; ELECTROENCEPHALOGRAPHY; FUNCTIONAL NEAR INFRARED SPECTROSCOPY; HUMAN; IMAGE ANALYSIS; IMAGE PROCESSING; IMAGE QUALITY; IMAGE RECONSTRUCTION; NEAR INFRARED SPECTROSCOPY; NEUROIMAGING; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; PROBABILISTIC REGISTRATION; REVIEW; SCALP; STEREOTAXIC COORDINATE SYSTEM; THREE DIMENSIONAL IMAGING; VIRTUAL REGISTRATION;

3D-DIGITIZER; INTERNATIONAL 10-20 SYSTEM; NORMALIZATION; OPTICAL TOPOGRAPHY; STEREOTACTIC COORDINATE SYSTEM; TALAIRACH SYSTEM;

ADULT; ALGORITHMS; CHILD; CHILD, PRESCHOOL; FUNCTIONAL NEUROIMAGING; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; INFANT; INFANT, NEWBORN; MAGNETIC RESONANCE IMAGING; SCALP; SOFTWARE; SPECTROSCOPY, NEAR-INFRARED; STEREOTAXIC TECHNIQUES;

EID: 84889667668     PISSN: 10538119     EISSN: 10959572     Source Type: Journal    
DOI: 10.1016/j.neuroimage.2013.07.025     Document Type: Review

References (90)

1. Abdelnour F., Huppert T. A random-effects model for group-level analysis of diffuse optical brain imaging. Biomed. Opt. Express 2010, 2:1-25.
2. Altaye M., Holland S.K., Wilke M., Gaser C. Infant brain probability templates for MRI segmentation and normalization. Neuroimage 2008, 43:721-730.
3. American Electroencephalographic Society Guideline thirteen: guidelines for standard electrode position nomenclature. American Electroencephalographic Society. J. Clin. Neurophysiol. 1994, 11:111-113.
4. Amunts K., Schleicher A., Zilles K. Cytoarchitecture of the cerebral cortex-more than localization. Neuroimage 2007, 37:1061-1065. (discussion 1066-1068).
5. Arridge S.R. Optical tomography in medical imaging. Inverse Prob. 1999, 15:R49-R93.
6. Ashburner J., Friston K.J. Nonlinear spatial normalization using basis functions. Hum. Brain Mapp. 1999, 7:254-266.
7. Ashburner J., Andersson J.L.R., Friston K.J. Image registration using a symmetric prior-in three dimensions. Hum. Brain Mapp. 2000, 9:212-225.
8. Bamett A.H., Culver J.P., Sorensen A.G., Dale A., Boas D.A. Robust inference of baseline optical properties of the human head with three-dimensional segmentation from magnetic resonance imaging. Appl. Opt. 2003, 42:3095-3108.
9. Bandettini P.A. Twenty years of functional MRI: the science and the stories. Neuroimage 2012, 62:575-588.
10. Barbour R.L., Graber H.L., Jenghwa C., Barbour S.L.S., Koo P.C., Aronson R. MRI-guided optical tomography: prospects and computation for a new imaging method. IEEE Comput. Sci. Eng. 1995, 2:63-77.
11. Bluestone A., Abdoulaev G., Schmitz C., Barbour R., Hielscher A. Three-dimensional optical tomography of hemodynamics in the human head. Opt. Express 2001, 9:272-286.
12. Blume W.T., Buza R.C., Okazaki H. Anatomic correlates of the ten-twenty electrode placement system in infants. Electroencephalogr. Clin. Neurophysiol. 1974, 36:303-307.
13. Boas D.A., Dale A.M. Simulation study of magnetic resonance imaging-guided cortically constrained diffuse optical tomography of human brain function. Appl. Opt. 2005, 44:1957-1968.
14. Boas D.A., Strangman G., Culver J.P., Hoge R.D., Jasdzewski G., Poldrack R.A., Rosen B.R., Mandeville J.B. Can the cerebral metabolic rate of oxygen be estimated with near-infrared spectroscopy?. Phys. Med. Biol. 2003, 48:2405-2418.
15. Boas D.A., Dale A.M., Franceschini M.A. Diffuse optical imaging of brain activation: approaches to optimizing image sensitivity, resolution, and accuracy. Neuroimage 2004, 23(Supplement 1):S275-S288.
16. Brett M., Johnsrude I.S., Owen A.M. The problem of functional localization in the human brain. Nat. Rev. Neurosci. 2002, 3:243-249.
17. Brodmann K. Beiträge zur histologischen Lokalisation der Großhirnrinde. VI: Die Cortexgliederung des Menschen. J. Psychol. Neurol. 1908, X:231-246. (in German).
18. Burgund E.D., Kang H.C., Kelly J.E., Buckner R.L., Snyder A.Z., Petersen S.E., Schlaggar B.L. The feasibility of a common stereotactic space for children and adults in fMRI studies of development. Neuroimage 2002, 17:184-200.
19. Chance B., Zhuang Z., UnAh C., Alter C., Lipton L. Cognition-activated low-frequency modulation of light absorption in human brain. Proc. Natl. Acad. Sci. U. S. A. 1993, 90:3770-3774.
20. Chatrian G.E. Ten percent electrode system for topographic studies of spontaneous and evoked EEG activity. Am. J. Electroencephalogr. Technol. 1985, 25:83-92.
21. Collins D.L., Neelin P., Peters T.M., Evans A.C. Automatic 3D intersubject registration of MR volumetric data in standardized Talairach space. J. Comput. Assist. Tomogr. 1994, 18:192-205.
22. Cooper R.J., Caffini M., Dubb J., Fang Q., Custo A., Tsuzuki D., Fischl B., Wells W., Dan I., Boas D.A. Validating atlas-guided DOT: a comparison of diffuse optical tomography informed by atlas and subject-specific anatomies. Neuroimage 2012, 62:1999-2006.
23. Cox R.W. AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. Comput. Biomed. Res. 1996, 29:162-173.
24. Culver J.P., Choe R., Holboke M.J., Zubkov L., Durduran T., Slemp A., Ntziachristos V., Chance B., Yodh A.G. Three-dimensional diffuse optical tomography in the parallel plane transmission geometry: evaluation of a hybrid frequency domain/continuous wave clinical system for breast imaging. Med. Phys. 2003, 30:235-247.
25. Custo A., Boas D.A., Tsuzuki D., Dan I., Mesquita R., Fischl B., Grimson W.E., Wells W. Anatomical atlas-guided diffuse optical tomography of brain activation. Neuroimage 2010, 49:561-567.
26. Cutini S., Scatturin P., Zorzi M. A new method based on ICBM152 head surface for probe placement in multichannel fNIRS. Neuroimage 2011, 54:919-927.
27. Eggebrecht A.T., White B.R., Ferradal S.L., Chen C., Zhan Y., Snyder A.Z., Dehghani H., Culver J.P. A quantitative spatial comparison of high-density diffuse optical tomography and fMRI cortical mapping. Neuroimage 2012, 61:1120-1128.
28. Fang Q. Mesh-based Monte Carlo method using fast ray-tracing in Plucker coordinates. Biomed. Opt. Express 2010, 1:165-175.
29. Ferrari M., Quaresima V. A brief review on the history of human functional near-infrared spectroscopy (fNIRS) development and fields of application. Neuroimage 2012, 63:921-935.
30. Fischl B. FreeSurfer. Neuroimage 2012, 62:774-781.
31. Fonov V., Evans A.C., Botteron K., Almli C.R., McKinstry R.C., Collins D.L. Unbiased average age-appropriate atlases for pediatric studies. Neuroimage 2011, 54:313-327.
32. Friston K.J., Holmes A.P., Worsley K.J., Poline J.P., Frith C.D., Frackowiak R.S.J. Statistical parametric maps in functional imaging: a general linear approach. Hum. Brain Mapp. 1994, 2:189-210.
33. Friston K.J., Holmes A., Poline J.B., Price C.J., Frith C.D. Detecting activations in PET and fMRI: levels of inference and power. Neuroimage 1996, 4:223-235.
34. Gevins A.S., Illes J. Neurocognitive networks of the human brain. Ann. N. Y. Acad. Sci. 1991, 620:22-44.
35. Gholipour A., Kehtarnavaz N., Briggs R., Devous M., Gopinath K. Brain functional localization: a survey of image registration techniques. IEEE Trans. Med. Imaging 2007, 26:427-451.
36. Gousias I.S., Rueckert D., Heckemann R.A., Dyet L.E., Boardman J.P., Edwards A.D., Hammers A. Automatic segmentation of brain MRIs of 2-year-olds into 83 regions of interest. Neuroimage 2008, 40:672-684.
37. Hill J., Dierker D., Neil J., Inder T., Knutsen A., Harwell J., Coalson T., Van Essen D. A surface-based analysis of hemispheric asymmetries and folding of cerebral cortex in term-born human infants. J. Neurosci. 2010, 30:2268-2276.
38. Homan R.W., Herman J., Purdy P. Cerebral location of international 10-20 system electrode placement. Electroencephalogr. Clin. Neurophysiol. 1987, 66:376-382.
39. Hoshi Y., Tamura M. Dynamic multichannel near-infrared optical imaging of human brain activity. J. Appl. Physiol. 1993, 75:1842-1846.
40. Huppert T.J., Diamond S.G., Franceschini M.A., Boas D.A. HomER: a review of time-series analysis methods for near-infrared spectroscopy of the brain. Appl. Opt. 2009, 48:D280-D298.
41. Jack C.R., Marsh W.R., Hirschorn K.A., Sharbrough F.W., Cascino G.D., Karwoski R.A., Robb R.A. EEG scalp electrode projection onto three-dimensional surface rendered images of the brain. Radiology 1990, 176:413-418.
42. Jasper H.H. The ten-twenty electrode system of the International Federation. Electroencephalogr. Clin. Neurophysiol. 1958, 371-375.
43. Jobsis F.F. Noninvasive, infrared monitoring of cerebral and myocardial oxygen sufficiency and circulatory parameters. Science 1977, 198:1264-1267.
44. Jurcak V., Tsuzuki D., Dan I. 10/20, 10/10, and 10/5 systems revisited: their validity as relative head-surface-based positioning systems. Neuroimage 2007, 34:1600-1611.
45. Kato T., Kamei A., Takashima S., Ozaki T. Human visual cortical function during photic stimulation monitoring by means of near-infrared spectroscopy. J. Cereb. Blood Flow Metab. 1993, 13:516-520.
46. Katura T., Sato H., Fuchino Y., Yoshida T., Atsumori H., Kiguchi M., Maki A., Abe M., Tanaka N. Extracting task-related activation components from optical topography measurement using independent components analysis. J. Biomed. Opt. 2008, 13:054008.
47. Klem G.H., Luders H.O., Jasper H.H., Elger C. The ten-twenty electrode system of the International Federation. The International Federation of Clinical Neurophysiology. Electroencephalogr. Clin. Neurophysiol. Suppl. 1999, 52:3-6.
48. Koessler L., Maillard L., Benhadid A., Vignal J.P., Felblinger J., Vespignani H., Braun M. Automated cortical projection of EEG sensors: anatomical correlation via the international 10-10 system. Neuroimage 2009, 46:64-72.
49. Koizumi H., Yamamoto T., Maki A., Yamashita Y., Sato H., Kawaguchi H., Ichikawa N. Optical topography: practical problems and new applications. Appl. Opt. 2003, 42:3054-3062.
50. Kuklisova-Murgasova M., Aljabar P., Srinivasan L., Counsell S.J., Doria V., Serag A., Gousias I.S., Boardman J.P., Rutherford M.A., Edwards A.D., Hajnal J.V., Rueckert D. A dynamic 4D probabilistic atlas of the developing brain. Neuroimage 2011, 54:2750-2763.
51. Lagerlund T.D., Sharbrough F.W., Jack C.R., Erickson B.J., Strelow D.C., Cicora K.M., Busacker N.E. Determination of 10-20 system electrode locations using magnetic resonance image scanning with markers. Electroencephalogr. Clin. Neurophysiol. 1993, 86:7-14.
52. Laird A.R., Robinson J.L., McMillan K.M., Tordesillas-Gutierrez D., Moran S.T., Gonzales S.M., Ray K.L., Franklin C., Glahn D.C., Fox P.T., Lancaster J.L. Comparison of the disparity between Talairach and MNI coordinates in functional neuroimaging data: validation of the Lancaster transform. Neuroimage 2010, 51:677-683.
53. Lancaster J.L., Woldorff M.G., Parsons L.M., Liotti M., Freitas C.S., Rainey L., Kochunov P.V., Nickerson D., Mikiten S.A., Fox P.T. Automated Talairach atlas labels for functional brain mapping. Hum. Brain Mapp. 2000, 10:120-131.
54. Lancaster J.L., Tordesillas-Gutierrez D., Martinez M., Salinas F., Evans A., Zilles K., Mazziotta J.C., Fox P.T. Bias between MNI and Talairach coordinates analyzed using the ICBM-152 brain template. Hum. Brain Mapp. 2007, 28:1194-1205.
55. Maki A., Yamashita Y., Ito Y., Watanabe E., Mayanagi Y., Koizumi H. Spatial and temporal analysis of human motor activity using noninvasive NIR topography. Med. Phys. 1995, 22:1997-2005.
56. Morris H.H., Luders H., Lesser R.P., Dinner D.S., Klem G.H. The value of closely spaced scalp electrodes in the localization of epileptiform foci: a study of 26 patients with complex partial seizures. Electroencephalogr. Clin. Neurophysiol. 1986, 63:107-111.
57. Myslobodsky M.S., Bar-Ziv J. Locations of occipital EEG electrodes verified by computed tomography. Electroencephalogr. Clin. Neurophysiol. 1989, 72:362-366.
58. Myslobodsky M.S., Coppola R., Bar-Ziv J., Weinberger D.R. Adequacy of the International 10-20 electrode system for computed neurophysiologic topography. J. Clin. Neurophysiol. 1990, 7:507-518.
59. Nichols T.E. Multiple testing corrections, nonparametric methods, and random field theory. Neuroimage 2012, 62:811-815.
60. Nuwer M.R., Comi G., Emerson R., Fuglsang-Frederiksen A., Guerit J.M., Hinrichs H., Ikeda A., Luccas F.J., Rappelsburger P. IFCN standards for digital recording of clinical EEG. International Federation of Clinical Neurophysiology. Electroencephalogr. Clin. Neurophysiol. 1998, 106:259-261.
61. Obrig H., Villringer A. Beyond the visible-imaging the human brain with light. J. Cereb. Blood Flow Metab. 2003, 23:1-18.
62. Okada E., Firbank M., Schweiger M., Arridge S.R., Cope M., Delpy D.T. Theoretical and experimental investigation of near-infrared light propagation in a model of the adult head. Appl. Opt. 1997, 36:21-31.
63. Okamoto M., Dan I. Automated cortical projection of head-surface locations for transcranial functional brain mapping. Neuroimage 2005, 26:18-28.
64. Okamoto M., Dan H., Sakamoto K., Takeo K., Shimizu K., Kohno S., Oda I., Isobe S., Suzuki T., Kohyama K., Dan I. Three-dimensional probabilistic anatomical cranio-cerebral correlation via the international 10-20 system oriented for transcranial functional brain mapping. Neuroimage 2004, 21:99-111.
65. Okamoto M., Dan H., Shimizu K., Takeo K., Amita T., Oda I., Konishi I., Sakamoto K., Isobe S., Suzuki T., Kohyama K., Dan I. Multimodal assessment of cortical activation during apple peeling by NIRS and fMRI. Neuroimage 2004, 21:1275-1288.
66. Okamoto M., Tsuzuki D., Clowney L., Dan H., Singh A.K., Dan I. Structural atlas-based spatial registration for functional near-infrared spectroscopy enabling inter-study data integration. Clin. Neurophysiol. 2009, 120:1320-1328.
67. Oostenveld R., Praamstra P. The five percent electrode system for high-resolution EEG and ERP measurements. Clin. Neurophysiol. 2001, 112:713-719.
68. Sanchez C.E., Richards J.E., Almli C.R. Neurodevelopmental MRI brain templates for children from 2weeks to 4years of age. Dev. Psychobiol. 2012, 54:77-91.
69. Schroeter M.L., Zysset S., Kupka T., Kruggel F., Yves von Cramon D. Near-infrared spectroscopy can detect brain activity during a color-word matching Stroop task in an event-related design. Hum. Brain Mapp. 2002, 17:61-71.
70. Shattuck D.W., Mirza M., Adisetiyo V., Hojatkashani C., Salamon G., Narr K.L., Poldrack R.A., Bilder R.M., Toga A.W. Construction of a 3D probabilistic atlas of human cortical structures. Neuroimage 2008, 39:1064-1080.
71. Shi F., Yap P.T., Fan Y., Gilmore J.H., Lin W., Shen D. Construction of multi-region-multi-reference atlases for neonatal brain MRI segmentation. Neuroimage 2010, 51:684-693.
72. Shi F., Yap P.T., Wu G., Jia H., Gilmore J.H., Lin W., Shen D. Infant brain atlases from neonates to 1- and 2-year-olds. PLoS One 2011, 6:e18746.
73. Singh A.K., Okamoto M., Dan H., Jurcak V., Dan I. Spatial registration of multichannel multi-subject fNIRS data to MNI space without MRI. Neuroimage 2005, 27:842-851.
74. Sun J. Tail probabilities of the maxima of Gaussian randomfields. Ann. Probab. 1993, 21:34-71.
75. Sun J., Loader C. Simultaneous confidence bands for linear regression and smoothing. Ann. Stat. 1994, 22:1328-1345.
76. Talairach J., Tournoux P. Co-Planar Stereotaxic Atlas of the Human Brain: 3-Dimensional Proportional System: An Approach to Cerebral Imaging 1988, Medical Publishers, New York.
77. Tanaka C., Matsui M., Uematsu A., Noguchi K., Miyawaki T. Developmental trajectories of the fronto-temporal lobes from infancy to early adulthood in healthy individuals. Dev. Neurosci. 2012, 34:477-487.
78. Towle V.L., Bolanos J., Suarez D., Tan K., Grzeszczuk R., Levin D.N., Cakmur R., Frank S.A., Spire J.P. The spatial location of EEG electrodes: locating the best-fitting sphere relative to cortical anatomy. Electroencephalogr. Clin. Neurophysiol. 1993, 86:1-6.
79. Tsuzuki D., Jurcak V., Singh A.K., Okamoto M., Watanabe E., Dan I. Virtual spatial registration of stand-alone fNIRS data to MNI space. Neuroimage 2007, 34:1506-1518.
80. Tsuzuki D., Cai D.S., Dan H., Kyutoku Y., Fujita A., Watanabe E., Dan I. Stable and convenient spatial registration of stand-alone NIRS data through anchor-based probabilistic registration. Neurosci. Res. 2012, 72:163-171.
81. Tzourio-Mazoyer N., Landeau B., Papathanassiou D., Crivello F., Etard O., Delcroix N., Mazoyer B., Joliot M. Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 2002, 15:273-289.
82. Uematsu A., Matsui M., Tanaka C., Takahashi T., Noguchi K., Suzuki M., Nishijo H. Developmental trajectories of amygdala and hippocampus from infancy to early adulthood in healthy individuals. PLoS One 2012, 7:e46970.
83. Van den Elsen P.A., Viergever M.A. Marker guided registration of electromagnetic dipole data with tomographic images. Information Processing in Medical Imaging 1991, 142-154. Springer, Berlin. A.C. Colchester, D.J. Hawkes (Eds.).
84. Villringer A., Planck J., Hock C., Schleinkofer L., Dirnagl U. Near infrared spectroscopy (NIRS): a new tool to study hemodynamic changes during activation of brain function in human adults. Neurosci. Lett. 1993, 154:101-104.
85. Watanabe E., Yamashita Y., Maki A., Ito Y., Koizumi H. Non-invasive functional mapping with multi-channel near infra-red spectroscopic topography in humans. Neurosci. Lett. 1996, 205:41-44.
86. Watanabe H., Homae F., Nakano T., Tsuzuki D., Enkhtur L., Nemoto K., Dan I., Taga G. Effect of auditory input on activations in infant diverse cortical regions during audiovisual processing. Hum. Brain Mapp. 2013, 34:543-565.
87. Yanagisawa H., Dan I., Tsuzuki D., Kato M., Okamoto M., Kyutoku Y., Soya H. Acute moderate exercise elicits increased dorsolateral prefrontal activation and improves cognitive performance with Stroop test. Neuroimage 2010, 50:1702-1710.
88. Ye J.C., Tak S., Jang K.E., Jung J., Jang J. NIRS-SPM: statistical parametric mapping for near-infrared spectroscopy. Neuroimage 2009, 44:428-447.
89. Zeff B.W., White B.R., Dehghani H., Schlaggar B.L., Culver J.P. Retinotopic mapping of adult human visual cortex with high-density diffuse optical tomography. Proc. Natl. Acad. Sci. U. S. A. 2007, 104:12169-12174.
90. Zilles K., Amunts K. Centenary of Brodmann's map-conception and fate. Nat. Rev. Neurosci. 2010, 11:139-145.