Exploitation of semantic similarity for adaptation of existing terminologies within biomedical area

CEUR Workshop Proceedings

Volumn 673, Issue , 2010, Pages

  Dupuch, Marie ^a,b,c   Trinquart, Ludovic ^d   Colombet, Isabelle ^a,b,c,d   Jaulent, Marie Christine ^a,b,c   Grabar, Natalia ^a,b,c,d  

^a CENTRE DE RECHERCHE DES CORDELIERS   (France)

^b UNIVERSITÉ PARIS DESCARTES   (France)

^c INSERM   (France)

^d ASSISTANCE PUBLIQUE HÔPITAUX DE PARIS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

SEMANTICS;

BIOMEDICAL DOMAIN; NUMERIC VALUES; SEMANTIC INFORMATION; SEMANTIC SIMILARITY; UMLS METATHESAURUS;

TERMINOLOGY;

EID: 84889648572     PISSN: 16130073     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (35)

1. NLM: UMLS Knowledge Sources Manual. National Library of Medicine, Bethesda, Maryland. (2008) www.nlm.nih.gov/research/umls/.
2. D'aquin, M., Schlicht, A., Stuckenschmidt, H., Sabou, M.: Ontology modularization for knowledge selection: Experiments and evaluations. In: 18th International Conference on Database and Expert Systems Applications - DEXA'07, Regensburg, Germany (2007) 874883
3. Stuckenschmidt, H., Parent, C., Spaccapietra, S.: Modular Ontologies. Concepts, Theories and Techniques for Knowledge Modularization. Springer (2009)
4. Meade, M., Richardson, W.: Selecting and appraising studies for a systematic review. Ann Intern Med 127(7) (1997) 531-7
5. Haynes, R.B., Wilczynski, N.L.: Optimal search strategies for retrieving scientifically strong studies of diagnosis from medline: analytical survey. BMJ 330(7501) (2005) 1162-3
6. Leeang, M., Scholten, R., Rutjes, A., Reitsma, J., Bossuyt, P.: Use of methodological search filters to identify diagnostic accuracy studies can lead to the omission of relevant studies. Clin Epidemiol 59(3) (2006) 234-40
7. Aphinyanaphongs, Y., Tsamardinos, I., Statnikov, A., Hardin, D., Aliferis, C.: Text categorization models for high-quality article retrieval in internal medicine. J Am Med Inform. 12(2) (2005) 207-16
8. Cohen, A., Hersh, W., Peterson, K., Yen, P.: Reducing workload in systematic review preparation using automated citation classification. JAMIA 13(2) (2006) 206-19
9. Demner-Fushman, D., Few, B., Hauser, S., Thoma, G.: Automatically identifying health outcome information in medline records. JAMIA 13(1) (2006) 52-60
10. Kilicoglu, H., Demner-Fushman, D., Rindesch, T., Wilczynski, N., Haynes, R.: Towards automatic recognition of scientifically rigorous clinical research evidence. J Am Med Inform Assoc 16(1) (2009) 25-31
11. Condamines, A., Rebeyrolle, J.: CTKB : A corpus-based approach to a terminological knowledge base. In: Proceedings of Computerm'98 (First Workshop on Computational Terminology), Coling-ACL'98, Université de Montréal, Montréal, Quebec, Canada (1998) 29-35
12. Maedche, A., Staab, S.: Mining ontologies from text. In Dieng, R., Corby, O., eds.: EKAW 2000, Juan les Pins (2000)
13. Giraldo, G., Reynaud, C.: Construction semi-automatique d'ontologies à partir de DTDs relatives à un meĉme domaine. In: Actes de la conférence Journées Franco-phones de l'Ingénierie des Connaissances (IC), Rouen (28-30 mai 2002)
14. Krivine, S., Nobécourt, J., Soualmia, L., Cerbah, F., Duclos, C.: Construction automatique d'ontologies à partir d'une base de données relationnelles : application au médicament dans le domaine de la pharmacovigilance. In: IC 2009. (2009)
15. Kamel, M., Aussenac-Gilles, N.: Construction automatique d'ontologies à partir de spécifications de bases de données. In: IC 2009. (2009)
16. van Heijst, G., Schreiber, A., Wielinga, B.: Using explicit ontologies in KBS de- velopment. IJHCS 46(2-3) (1997) 183-292
17. Guarino, N.: Understanding, building, and using ontologies. IJHCS 46(2-3) (1997) 293310
18. Wang, Z., Wang, K., Topor, R., Pan, J.Z.: Forgetting concepts in DL-Lite. In Verlag, S., ed.: WWTP. (2008) 245-57
19. Qi, G., Haase, P., Huang, Z., Ji, Q., Pan, J.Z., Volker, J.: A kernel revision operator for terminologies - algorithms and evaluation. In: International Conference on The Semantic Web. (2008) 419-34
20. Gene Ontology Consortium: Gene Ontology: tool for the unification of biology. Nature genetics 25 (2000) 25-29
21. Rada, R., Mili, H., Bicknell, E., Blettner, M.: Development and application of a metric on semantic nets. IEEE Transactions on systems, man and cybernetics 19(1) (1989) 17-30
22. Zhong, J., Zhu, H., Li, J., Yu, Y.: Conceptual graph matching for semantic search. In: In Proc. of 10th International Conference on Conceptual Structures, ICCS2002, LNCS 2393, Springer Verlag. (2002) 92-106
23. Sussna, M.: Word sense disambiguation for free-text indexing using a massive semantic network. In: Conference on Information and Knowledge Management. (1993)
24. Resnik, P.: Disambiguating noun groupings with respect to wordnet senses. (1995)
25. Seco, N., Veale, T., Hayes, J.: An intrinsic information content metric for semantic similarity in wordnet. In: Proceedings of ECAI 2004, the 16th European Conference on Artificial Intelligence. (2004)
26. Hirst, G., Onge, D.S.: Lexical chains as representations of context for the detection and correction of malapropisms. The MIT Press (1) (1998)
27. Bousquet, C., Jaulent, M.C., Chatellier, G., Degoulet, P.: Using semantic distance for the efficient coding of medical concepts. In: Annual Symposium of the American Medical Informatics Association (AMIA), Los Angeles, CA (2000) 96-100
28. Lord, P., Stevens, R., Brass, A., Goble, C.: Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation. Bioinformatics 19(10) (2003) 1275-1283
29. Caviedes, J.E., Cimino, J.J.: Towards the development of a conceptual distance metric for the umls. Journal of Biomedical Informatics 37 (2004) 77-85
30. Pedersen, T., Pakhomov, S.V., Patwardhan, S., Chute, C.G.: Measures of semantic similarity and relatedness in the biomedical domain. J Biomed Inform 40(3) (2007) 288-99
31. Lee, W.N., Shah, N., Sundlass, K., Musen, M.: Comparison of ontology-based semantic-similarity measures. In: AMIA Annu Symp Proc. (2008) 3848
32. McInnes, B., Pedersen, T., Pakhomov, S.: UMLS-interface and UMLS-similarity : Open source software for measuring paths and semantic similarity. In: AMIA. (2009) 431-5
33. National Library of Medicine Bethesda, Maryland: Medical Subject Headings. (2001) www.nlm.nih.gov/mesh/meshhome.html.
34. NLM: Medline: medical literature on-line. National Library of Medicine, Bethesda, Maryland. (2009) www.ncbi.nlm.nih.gov/sites/entrez.
35. Cormen, T.H., Leiserson, C.E., Rivest, R.L., Stein, C.: Introduction to Algorithms. Seconde edn. MIT Press and McGraw-Hill (2001)