메뉴 건너뛰기




Volumn 2, Issue 6, 2013, Pages 976-987

Canonical and non-canonical EcfG sigma factors control the general stress response in Rhizobium etli

Author keywords

proteobacteria; ECF sigma factor; EcfG; General stress response; PhyR; TcrX

Indexed keywords

EXTRACYTOPLASMIC FUNCTION SIGMA FACTOR; KATG PROTEIN; MUTANT PROTEIN; SIGMA FACTOR; UNCLASSIFIED DRUG;

EID: 84889639890     PISSN: None     EISSN: 20458827     Source Type: Journal    
DOI: 10.1002/mbo3.137     Document Type: Article
Times cited : (25)

References (40)
  • 1
    • 84877933468 scopus 로고    scopus 로고
    • The Bartonella quintana extracytoplasmic function sigma factor RpoE has a role in bacterial adaptation to the arthropod vector environment
    • Abromaitis, S., and J. E. Koehler. 2013. The Bartonella quintana extracytoplasmic function sigma factor RpoE has a role in bacterial adaptation to the arthropod vector environment. J. Bacteriol. 195:2662-2674.
    • (2013) J. Bacteriol. , vol.195 , pp. 2662-2674
    • Abromaitis, S.1    Koehler, J.E.2
  • 3
    • 77950651423 scopus 로고    scopus 로고
    • Dual control of Sinorhizobium meliloti RpoE2 sigma factor activity by two PhyR-type two-component response regulators
    • Bastiat, B., L. Sauviac, and C. Bruand. 2010. Dual control of Sinorhizobium meliloti RpoE2 sigma factor activity by two PhyR-type two-component response regulators. J. Bacteriol. 192:2255-2265.
    • (2010) J. Bacteriol. , vol.192 , pp. 2255-2265
    • Bastiat, B.1    Sauviac, L.2    Bruand, C.3
  • 4
    • 80053226878 scopus 로고    scopus 로고
    • The RpoS-mediated general stress response in Escherichia coli
    • Battesti, A., N. Majdalani, and S. Gottesman. 2011. The RpoS-mediated general stress response in Escherichia coli. Annu. Rev. Microbiol. 65:189-213.
    • (2011) Annu. Rev. Microbiol. , vol.65 , pp. 189-213
    • Battesti, A.1    Majdalani, N.2    Gottesman, S.3
  • 8
    • 49749105565 scopus 로고    scopus 로고
    • A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria
    • Crossman, L. C., S. Castillo-Ramirez, C. McAnnula, L. Lozano, G. S. Vernikos, J. L. Acosta, et al. 2008. A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria. PLoS ONE 3:e2567.
    • (2008) PLoS ONE , vol.3
    • Crossman, L.C.1    Castillo-Ramirez, S.2    McAnnula, C.3    Lozano, L.4    Vernikos, G.S.5    Acosta, J.L.6
  • 9
    • 0028851773 scopus 로고
    • Structural and functional analysis of the fixLJ genes of Rhizobium leguminosarum biovar phaseoli CNPAF512
    • D'Hooghe, I., J. Michiels, K. Vlassak, C. Verreth, F. Waelkens, and J. Vanderleyden. 1995. Structural and functional analysis of the fixLJ genes of Rhizobium leguminosarum biovar phaseoli CNPAF512. Mol. Gen. Genet. 249:117-126.
    • (1995) Mol. Gen. Genet. , vol.249 , pp. 117-126
    • D'Hooghe, I.1    Michiels, J.2    Vlassak, K.3    Verreth, C.4    Waelkens, F.5    Vanderleyden, J.6
  • 10
    • 0030725163 scopus 로고    scopus 로고
    • The arginine deiminase pathway in Rhizobium etli: DNA sequence analysis and functional study of the arcABC genes
    • D'Hooghe, I., C. Vander Wauven, J. Michiels, C. Tricot, P. de Wilde, J. Vanderleyden, et al. 1997. The arginine deiminase pathway in Rhizobium etli: DNA sequence analysis and functional study of the arcABC genes. J. Bacteriol. 179:7403-7409.
    • (1997) J. Bacteriol. , vol.179 , pp. 7403-7409
    • D'Hooghe, I.1    Vander Wauven, C.2    Michiels, J.3    Tricot, C.4    de Wilde, P.5    Vanderleyden, J.6
  • 11
    • 14544302196 scopus 로고    scopus 로고
    • Defence of Rhizobium etli bacteroids against oxidative stress involves a complexly regulated atypical 2-Cys peroxiredoxin
    • Dombrecht, B., C. Heusdens, S. Beullens, C. Verreth, E. Mulkers, P. Proost, et al. 2005. Defence of Rhizobium etli bacteroids against oxidative stress involves a complexly regulated atypical 2-Cys peroxiredoxin. Mol. Microbiol. 55:1207-1221.
    • (2005) Mol. Microbiol. , vol.55 , pp. 1207-1221
    • Dombrecht, B.1    Heusdens, C.2    Beullens, S.3    Verreth, C.4    Mulkers, E.5    Proost, P.6
  • 12
    • 69949115085 scopus 로고    scopus 로고
    • Rhizobium etli HrpW is a pectin-degrading enzyme and differs from phytopathogenic homologues in enzymically crucial tryptophan and glycine residues
    • Fauvart, M., N. Verstraeten, B. Dombrecht, R. Venmans, S. Beullens, C. Heusdens, et al. 2009. Rhizobium etli HrpW is a pectin-degrading enzyme and differs from phytopathogenic homologues in enzymically crucial tryptophan and glycine residues. Microbiology 155:3045-3054.
    • (2009) Microbiology , vol.155 , pp. 3045-3054
    • Fauvart, M.1    Verstraeten, N.2    Dombrecht, B.3    Venmans, R.4    Beullens, S.5    Heusdens, C.6
  • 13
    • 84864004533 scopus 로고    scopus 로고
    • The LovK-LovR two-component system is a regulator of the general stress pathway in Caulobacter crescentus
    • Foreman, R., A. Fiebig, and S. Crosson. 2012. The LovK-LovR two-component system is a regulator of the general stress pathway in Caulobacter crescentus. J. Bacteriol. 194:3038-3049.
    • (2012) J. Bacteriol. , vol.194 , pp. 3038-3049
    • Foreman, R.1    Fiebig, A.2    Crosson, S.3
  • 15
    • 84858860817 scopus 로고    scopus 로고
    • A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
    • Frohlich, K. S., K. Papenfort, A. A. Berger, and J. Vogel. 2012. A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD. Nucleic Acids Res. 40:3623-3640.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 3623-3640
    • Frohlich, K.S.1    Papenfort, K.2    Berger, A.A.3    Vogel, J.4
  • 16
    • 42349117072 scopus 로고    scopus 로고
    • Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment
    • Garcia-de Los Santos, A., E. Lopez, C. A. Cubillas, K. D. Noel, S. Brom, and D. Romero. 2008. Requirement of a plasmid-encoded catalase for survival of Rhizobium etli CFN42 in a polyphenol-rich environment. Appl. Environ. Microbiol. 74:2398-2403.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2398-2403
    • Garcia-de Los Santos, A.1    Lopez, E.2    Cubillas, C.A.3    Noel, K.D.4    Brom, S.5    Romero, D.6
  • 17
    • 38649115014 scopus 로고    scopus 로고
    • PhyR is involved in the general stress response of Methylobacterium extorquens AM1
    • Gourion, B., A. Francez-Charlot, and J. A. Vorholt. 2008. PhyR is involved in the general stress response of Methylobacterium extorquens AM1. J. Bacteriol. 190:1027-1035.
    • (2008) J. Bacteriol. , vol.190 , pp. 1027-1035
    • Gourion, B.1    Francez-Charlot, A.2    Vorholt, J.A.3
  • 18
    • 67650418180 scopus 로고    scopus 로고
    • The PhyR-sigma(EcfG) signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum
    • Gourion, B., S. Sulser, J. Frunzke, A. Francez-Charlot, P. Stiefel, G. Pessi, et al. 2009. The PhyR-sigma(EcfG) signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum. Mol. Microbiol. 73:291-305.
    • (2009) Mol. Microbiol. , vol.73 , pp. 291-305
    • Gourion, B.1    Sulser, S.2    Frunzke, J.3    Francez-Charlot, A.4    Stiefel, P.5    Pessi, G.6
  • 19
    • 84861427602 scopus 로고    scopus 로고
    • Structural basis of a protein partner switch that regulates the general stress response of Alpha-proteobacteria
    • Herrou, J., G. Rotskoff, Y. Luo, B. Roux, and S. Crosson. 2012. Structural basis of a protein partner switch that regulates the general stress response of Alpha-proteobacteria. Proc. Natl Acad. Sci. USA 109:E1415-E1423.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109
    • Herrou, J.1    Rotskoff, G.2    Luo, Y.3    Roux, B.4    Crosson, S.5
  • 20
    • 0037093379 scopus 로고    scopus 로고
    • Regulation of sigma factor competition by the alarmone ppGpp
    • Jishage, M., K. Kvint, V. Shingler, and T. Nystrom. 2002. Regulation of sigma factor competition by the alarmone ppGpp. Genes Dev. 16:1260-1270.
    • (2002) Genes Dev. , vol.16 , pp. 1260-1270
    • Jishage, M.1    Kvint, K.2    Shingler, V.3    Nystrom, T.4
  • 21
    • 84855365580 scopus 로고    scopus 로고
    • Role of Sphingomonas sp. strain Fr1 PhyR-NepR-sigmaEcfG cascade in general stress response and identification of a negative regulator of PhyR
    • Kaczmarczyk, A., S. Campagne, F. Danza, L. C. Metzger, J. A. Vorholt, and A. Francez-Charlot. 2011. Role of Sphingomonas sp. strain Fr1 PhyR-NepR-sigmaEcfG cascade in general stress response and identification of a negative regulator of PhyR. J. Bacteriol. 193:6629-6638.
    • (2011) J. Bacteriol. , vol.193 , pp. 6629-6638
    • Kaczmarczyk, A.1    Campagne, S.2    Danza, F.3    Metzger, L.C.4    Vorholt, J.A.5    Francez-Charlot, A.6
  • 22
    • 84877706971 scopus 로고    scopus 로고
    • The Brucella abortus general stress response system regulates chronic mammalian infection and is controlled by phosphorylation and proteolysis
    • Kim, H. S., C. C. Caswell, R. Foreman, R. M. 2nd Roop, and S. Crosson. 2013. The Brucella abortus general stress response system regulates chronic mammalian infection and is controlled by phosphorylation and proteolysis. J. Biol. Chem. 288:13906-13916.
    • (2013) J. Biol. Chem. , vol.288 , pp. 13906-13916
    • Kim, H.S.1    Caswell, C.C.2    Foreman, R.3    Roop II, R.M.4    Crosson, S.5
  • 23
    • 84877968008 scopus 로고    scopus 로고
    • The general stress response factor EcfG regulates expression of the C-2 hopanoid methylase HpnP in Rhodopseudomonas palustris TIE-1
    • Kulkarni, G., C. H. Wu, and D. K. Newman. 2013. The general stress response factor EcfG regulates expression of the C-2 hopanoid methylase HpnP in Rhodopseudomonas palustris TIE-1. J. Bacteriol. 195:2490-2498.
    • (2013) J. Bacteriol. , vol.195 , pp. 2490-2498
    • Kulkarni, G.1    Wu, C.H.2    Newman, D.K.3
  • 25
    • 79958833520 scopus 로고    scopus 로고
    • A two-component system, an anti-sigma factor and two paralogous ECF sigma factors are involved in the control of general stress response in Caulobacter crescentus
    • Lourenço, R. F., C. Kohler, and S. L. Gomes. 2011. A two-component system, an anti-sigma factor and two paralogous ECF sigma factors are involved in the control of general stress response in Caulobacter crescentus. Mol. Microbiol. 80:1598-1612.
    • (2011) Mol. Microbiol. , vol.80 , pp. 1598-1612
    • Lourenço, R.F.1    Kohler, C.2    Gomes, S.L.3
  • 26
    • 67649410398 scopus 로고    scopus 로고
    • Role of the extracytoplasmic function sigma factor RpoE4 in oxidative and osmotic stress responses in Rhizobium etli
    • Martinez-Salazar, J. M., E. Salazar, S. Encarnacion, M. A. Ramirez-Romero, and J. Rivera. 2009a. Role of the extracytoplasmic function sigma factor RpoE4 in oxidative and osmotic stress responses in Rhizobium etli. J. Bacteriol. 191:4122-4132.
    • (2009) J. Bacteriol. , vol.191 , pp. 4122-4132
    • Martinez-Salazar, J.M.1    Salazar, E.2    Encarnacion, S.3    Ramirez-Romero, M.A.4    Rivera, J.5
  • 28
    • 0028341168 scopus 로고
    • Characterization of the Rhizobium leguminosarum biovar phaseoli nifA gene, a positive regulator of nif gene expression
    • Michiels, J., I. D'Hooghe, C. Verreth, H. Pelemans, and J. Vanderleyden. 1994. Characterization of the Rhizobium leguminosarum biovar phaseoli nifA gene, a positive regulator of nif gene expression. Arch. Microbiol. 161:404-408.
    • (1994) Arch. Microbiol. , vol.161 , pp. 404-408
    • Michiels, J.1    D'Hooghe, I.2    Verreth, C.3    Pelemans, H.4    Vanderleyden, J.5
  • 29
    • 0032448378 scopus 로고    scopus 로고
    • Differential regulation of Rhizobium etli rpoN2 gene expression during symbiosis and free-living growth
    • Michiels, J., M. Moris, B. Dombrecht, C. Verreth, and J. Vanderleyden. 1998. Differential regulation of Rhizobium etli rpoN2 gene expression during symbiosis and free-living growth. J. Bacteriol. 180:3620-3628.
    • (1998) J. Bacteriol. , vol.180 , pp. 3620-3628
    • Michiels, J.1    Moris, M.2    Dombrecht, B.3    Verreth, C.4    Vanderleyden, J.5
  • 30
    • 22544453869 scopus 로고    scopus 로고
    • Effective symbiosis between Rhizobium etli and Phaseolus vulgaris requires the alarmone ppGpp
    • Moris, M., K. Braeken, E. Schoeters, C. Verreth, S. Beullens, J. Vanderleyden, et al. 2005. Effective symbiosis between Rhizobium etli and Phaseolus vulgaris requires the alarmone ppGpp. J. Bacteriol. 187:5460-5469.
    • (2005) J. Bacteriol. , vol.187 , pp. 5460-5469
    • Moris, M.1    Braeken, K.2    Schoeters, E.3    Verreth, C.4    Beullens, S.5    Vanderleyden, J.6
  • 31
    • 4944264194 scopus 로고    scopus 로고
    • GadY, a small-RNA regulator of acid response genes in Escherichia coli
    • Opdyke, J. A., J. G. Kang, and G. Storz. 2004. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J. Bacteriol. 186:6698-6705.
    • (2004) J. Bacteriol. , vol.186 , pp. 6698-6705
    • Opdyke, J.A.1    Kang, J.G.2    Storz, G.3
  • 32
    • 41849139346 scopus 로고    scopus 로고
    • Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
    • Padalon-Brauch, G., R. Hershberg, M. Elgrably-Weiss, K. Baruch, I. Rosenshine, H. Margalit, et al. 2008. Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence. Nucleic Acids Res. 36:1913-1927.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 1913-1927
    • Padalon-Brauch, G.1    Hershberg, R.2    Elgrably-Weiss, M.3    Baruch, K.4    Rosenshine, I.5    Margalit, H.6
  • 33
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M. W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1
  • 34
    • 78649371678 scopus 로고    scopus 로고
    • General stress response in Alpha-proteobacteria: PhyR and beyond
    • Staron, A., and T. Mascher. 2010. General stress response in Alpha-proteobacteria: PhyR and beyond. Mol. Microbiol. 78:271-277.
    • (2010) Mol. Microbiol. , vol.78 , pp. 271-277
    • Staron, A.1    Mascher, T.2
  • 35
    • 70350432754 scopus 로고    scopus 로고
    • The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family
    • Staron, A., H. J. Sofia, S. Dietrich, L. E. Ulrich, H. Liesegang, and T. Mascher. 2009. The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) sigma factor protein family. Mol. Microbiol. 74:557-581.
    • (2009) Mol. Microbiol. , vol.74 , pp. 557-581
    • Staron, A.1    Sofia, H.J.2    Dietrich, S.3    Ulrich, L.E.4    Liesegang, H.5    Mascher, T.6
  • 36
    • 75549092201 scopus 로고    scopus 로고
    • The MiST2 database: a comprehensive genomics resource on microbial signal transduction
    • Ulrich, L. E., and I. B. Zhulin. 2010. The MiST2 database: a comprehensive genomics resource on microbial signal transduction. Nucleic Acids Res. 38:D401-D407.
    • (2010) Nucleic Acids Res. , vol.38
    • Ulrich, L.E.1    Zhulin, I.B.2
  • 37
    • 0037854380 scopus 로고    scopus 로고
    • Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon
    • Vargas Mdel, C., S. Encarnacion, A. Davalos, A. Reyes-Perez, Y. Mora, A. Garcia-de los Santos, et al. 2003. Only one catalase, katG, is detectable in Rhizobium etli, and is encoded along with the regulator OxyR on a plasmid replicon. Microbiology 149:1165-1176.
    • (2003) Microbiology , vol.149 , pp. 1165-1176
    • Vargas Mdel, C.1    Encarnacion, S.2    Davalos, A.3    Reyes-Perez, A.4    Mora, Y.5    Garcia-de los Santos, A.6
  • 38
    • 76949103628 scopus 로고    scopus 로고
    • Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array
    • Vercruysse, M., M. Fauvart, L. Cloots, K. Engelen, I. M. Thijs, K. Marchal, et al. 2010. Genome-wide detection of predicted non-coding RNAs in Rhizobium etli expressed during free-living and host-associated growth using a high-resolution tiling array. BMC Genomics 11:53.
    • (2010) BMC Genomics , vol.11 , pp. 53
    • Vercruysse, M.1    Fauvart, M.2    Cloots, L.3    Engelen, K.4    Thijs, I.M.5    Marchal, K.6
  • 39
    • 79951557166 scopus 로고    scopus 로고
    • Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli
    • Vercruysse, M., M. Fauvart, A. Jans, S. Beullens, K. Braeken, L. Cloots, et al. 2011. Stress response regulators identified through genome-wide transcriptome analysis of the (p)ppGpp-dependent response in Rhizobium etli. Genome Biol. 12:R17.
    • (2011) Genome Biol. , vol.12
    • Vercruysse, M.1    Fauvart, M.2    Jans, A.3    Beullens, S.4    Braeken, K.5    Cloots, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.