-
1
-
-
0033046472
-
Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
-
Yewdell JW, Bennink JR. Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses. Annu Rev Immunol 1999; 17:51-88.
-
(1999)
Annu Rev Immunol
, vol.17
, pp. 51-88
-
-
Yewdell, J.W.1
Bennink, J.R.2
-
2
-
-
83155164579
-
Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?
-
Lundegaard C, Lund O, Nielsen M. Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy? Expert Rev Vaccines 2012; 11:43-54.
-
(2012)
Expert Rev Vaccines
, vol.11
, pp. 43-54
-
-
Lundegaard, C.1
Lund, O.2
Nielsen, M.3
-
3
-
-
77953496862
-
Major histocompatibility complex class I binding predictions as a tool in epitope discovery
-
Lundegaard C, Lund O, Buus S, Nielsen M. Major histocompatibility complex class I binding predictions as a tool in epitope discovery. Immunology 2010; 130:309-18.
-
(2010)
Immunology
, vol.130
, pp. 309-318
-
-
Lundegaard, C.1
Lund, O.2
Buus, S.3
Nielsen, M.4
-
4
-
-
34250176485
-
A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection
-
Assarsson E, Sidney J, Oseroff C et al. A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection. J Immunol 2007; 178:7890-901.
-
(2007)
J Immunol
, vol.178
, pp. 7890-7901
-
-
Assarsson, E.1
Sidney, J.2
Oseroff, C.3
-
5
-
-
0032080641
-
MHC class I/peptide stability: implications for immunodominance, in vitro proliferation, and diversity of responding CTL
-
Busch DH, Pamer EG. MHC class I/peptide stability: implications for immunodominance, in vitro proliferation, and diversity of responding CTL. J Immunol 1998; 160:4441-8.
-
(1998)
J Immunol
, vol.160
, pp. 4441-4448
-
-
Busch, D.H.1
Pamer, E.G.2
-
6
-
-
22544455376
-
The kinetic stability of MHC class II:peptide complexes is a key parameter that dictates immunodominance
-
Lazarski CA, Chaves FA, Jenks SA et al. The kinetic stability of MHC class II:peptide complexes is a key parameter that dictates immunodominance. Immunity 2005; 23:29-40.
-
(2005)
Immunity
, vol.23
, pp. 29-40
-
-
Lazarski, C.A.1
Chaves, F.A.2
Jenks, S.A.3
-
7
-
-
0029974607
-
Immunogenicity of peptides bound to MHC class I molecules depends on the MHC-peptide complex stability
-
van der Burg SH, Visseren MJ, Brandt RM, Kast WM, Melief CJ. Immunogenicity of peptides bound to MHC class I molecules depends on the MHC-peptide complex stability. J Immunol 1996; 156:3308-14.
-
(1996)
J Immunol
, vol.156
, pp. 3308-3314
-
-
van der Burg, S.H.1
Visseren, M.J.2
Brandt, R.M.3
Kast, W.M.4
Melief, C.J.5
-
8
-
-
84862152481
-
Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity
-
Harndahl M, Rasmussen M, Roder G et al. Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. Eur J Immunol 2012; 42:1405-16.
-
(2012)
Eur J Immunol
, vol.42
, pp. 1405-1416
-
-
Harndahl, M.1
Rasmussen, M.2
Roder, G.3
-
9
-
-
81255157073
-
Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay
-
Harndahl M, Rasmussen M, Roder G, Buus S. Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay. J Immunol Methods 2011; 374:5-12.
-
(2011)
J Immunol Methods
, vol.374
, pp. 5-12
-
-
Harndahl, M.1
Rasmussen, M.2
Roder, G.3
Buus, S.4
-
10
-
-
2342561929
-
Definition of supertypes for HLA molecules using clustering of specificity matrices
-
Lund O, Nielsen M, Kesmir C et al. Definition of supertypes for HLA molecules using clustering of specificity matrices. Immunogenetics 2004; 55:797-810.
-
(2004)
Immunogenetics
, vol.55
, pp. 797-810
-
-
Lund, O.1
Nielsen, M.2
Kesmir, C.3
-
11
-
-
0033388724
-
Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism
-
Sette A, Sidney J. Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism. Immunogenetics 1999; 50:201-12.
-
(1999)
Immunogenetics
, vol.50
, pp. 201-212
-
-
Sette, A.1
Sidney, J.2
-
12
-
-
84857362309
-
NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
-
Karosiene E, Lundegaard C, Lund O, Nielsen M. NetMHCcons: a consensus method for the major histocompatibility complex class I predictions. Immunogenetics 2011; 64:177-86.
-
(2011)
Immunogenetics
, vol.64
, pp. 177-186
-
-
Karosiene, E.1
Lundegaard, C.2
Lund, O.3
Nielsen, M.4
-
13
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
Nielsen M, Lundegaard C, Worning P et al. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci 2003; 12:1007-17.
-
(2003)
Protein Sci
, vol.12
, pp. 1007-1017
-
-
Nielsen, M.1
Lundegaard, C.2
Worning, P.3
-
16
-
-
59449094834
-
NetMHCpan, a method for MHC class I binding prediction beyond humans
-
Hoof I, Peters B, Sidney J et al. NetMHCpan, a method for MHC class I binding prediction beyond humans. Immunogenetics 2009; 61:1-13.
-
(2009)
Immunogenetics
, vol.61
, pp. 1-13
-
-
Hoof, I.1
Peters, B.2
Sidney, J.3
-
17
-
-
0033388725
-
SYFPEITHI: database for MHC ligands and peptide motifs
-
Rammensee H, Bachmann J, Emmerich NP, Bachor OA, Stevanovic S. SYFPEITHI: database for MHC ligands and peptide motifs. Immunogenetics 1999; 50:213-9.
-
(1999)
Immunogenetics
, vol.50
, pp. 213-219
-
-
Rammensee, H.1
Bachmann, J.2
Emmerich, N.P.3
Bachor, O.A.4
Stevanovic, S.5
-
19
-
-
54049098254
-
The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype
-
Lamberth K, Roder G, Harndahl M et al. The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype. Immunogenetics 2008; 60:633-43.
-
(2008)
Immunogenetics
, vol.60
, pp. 633-643
-
-
Lamberth, K.1
Roder, G.2
Harndahl, M.3
-
20
-
-
78651260398
-
HLArestrictor - a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides
-
Erup Larsen M, Kloverpris H, Stryhn A et al. HLArestrictor - a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides. Immunogenetics 2011; 63:43-55.
-
(2011)
Immunogenetics
, vol.63
, pp. 43-55
-
-
Erup Larsen, M.1
Kloverpris, H.2
Stryhn, A.3
-
21
-
-
79960976768
-
UniProt Knowledgebase: a hub of integrated protein data
-
bar009
-
Magrane M, Consortium U. UniProt Knowledgebase: a hub of integrated protein data. Database 2011; 2011:bar009.
-
(2011)
Database
, vol.2011
-
-
Magrane, M.1
Consortium, U.2
-
22
-
-
84871811905
-
Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach
-
Andreatta M, Lund O, Nielsen M. Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. Bioinformatics 2013; 29:8-14.
-
(2013)
Bioinformatics
, vol.29
, pp. 8-14
-
-
Andreatta, M.1
Lund, O.2
Nielsen, M.3
-
24
-
-
0026495447
-
Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2
-
Parker KC, Bednarek MA, Hull LK et al. Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2. J Immunol 1992; 149:3580-7.
-
(1992)
J Immunol
, vol.149
, pp. 3580-3587
-
-
Parker, K.C.1
Bednarek, M.A.2
Hull, L.K.3
-
25
-
-
0023115557
-
The relation between major histocompatibility complex (MHC) restriction and the capacity of Ia to bind immunogenic peptides
-
Buus S, Sette A, Colon SM, Miles C, Grey HM. The relation between major histocompatibility complex (MHC) restriction and the capacity of Ia to bind immunogenic peptides. Science 1987; 235:1353-8.
-
(1987)
Science
, vol.235
, pp. 1353-1358
-
-
Buus, S.1
Sette, A.2
Colon, S.M.3
Miles, C.4
Grey, H.M.5
-
26
-
-
0028052724
-
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains
-
Parker KC, Bednarek MA, Coligan JE. Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains. J Immunol 1994; 152:163-75.
-
(1994)
J Immunol
, vol.152
, pp. 163-175
-
-
Parker, K.C.1
Bednarek, M.A.2
Coligan, J.E.3
-
27
-
-
84864463147
-
Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion
-
Thomsen MC, Nielsen M. Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion. Nucleic Acids Res 2012; 40:W281-7.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Thomsen, M.C.1
Nielsen, M.2
|