Mycobacterium bourgelatii sp. nov., a rapidly growing, non-chromogenic species isolated from the lymph nodes of cattle

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 12, 2013, Pages 4669-4674

  Guérin Faublée, Véronique ^a   Flandrois, Jean Pierre ^b   Pichat, Catherine ^c   Boschiroli, Maria Laura ^d   Lamy, Brigitte ^e,f  

^a VETAGRO SUP   (France)

^b UNIVERSITÉ LYON 1   (France)

^c CENTRE HOSPITALIER LYON SUD   (France)

^d ANSES   (France)

^e HÔPITAL ARNAUD DE VILLENEUVE   (France)

^f UNIV MONTPELLIER   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; HEAT SHOCK PROTEIN 65; MESSENGER RNA; RNA POLYMERASE BETA SUBUNIT; SMALL SUBUNIT RIBOSOMAL RNA; SODA PROTEIN; TUF PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CATTLE; GENE SEQUENCE; HOUSEKEEPING GENE; LYMPH NODE; MYCOBACTERIUM; MYCOBACTERIUM BOURGELATII; MYCOBACTERIUM INTERMEDIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; TYPE STRAIN;

ANIMALS; BACTERIAL TYPING TECHNIQUES; CATTLE; DNA, BACTERIAL; FATTY ACIDS; FRANCE; GENES, BACTERIAL; LYMPH NODES; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; MYCOLIC ACIDS; PHYLOGENY; RIBOSOME SUBUNITS, SMALL, BACTERIAL; RNA, BACTERIAL;

EID: 84889577447     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.051979-0     Document Type: Article

References (25)

1. Adékambi, T. & Drancourt, M. (2004). Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int J Syst Evol Microbiol 54, 2095-2105.
2. Adékambi, T., Stein, A., Carvajal, J., Raoult, D. & Drancourt, M. (2006). Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation. J Clin Microbiol 44, 1268-1273.
3. Bos, D. H. & Posada, D. (2005). Using models of nucleotide evolution to build phylogenetic trees. Dev Comp Immunol 29, 211-227.
4. Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K. & Madden, T. L. (2009). BLAST+: architecture and applications. BMC Bioinformatics 10, 421.
5. Case, R. J., Boucher, Y., Dahllöf, I., Holmström, C., Doolittle, W. F. & Kjelleberg, S. (2007). Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies. Appl Environ Microbiol 73, 278-288.
6. Devulder, G., Pérouse de Montclos, M. & Flandrois, J.-P. (2005). A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model. Int J Syst Evol Microbiol 55, 293-302.
7. Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
8. Edson, R. S., Terrell, C. L., Brutinel, W. M. & Wengenack, N. L. (2006). Mycobacterium intermedium granulomatous dermatitis from hot tub exposure. Emerg Infect Dis 12, 821-823.
9. Felske, A., Engelen, B., Nübel, U. & Backhaus, H. (1996). Direct ribosome isolation from soil to extract bacterial rRNA for community analysis. Appl Environ Microbiol 62, 4162-4167.
10. Gascuel, O. (1997). BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14, 685-695.
11. Gouy, M., Guindon, S. & Gascuel, O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27, 221-224.
12. Guindon, S. & Gascuel, O. (2003). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696-704.
13. Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59, 307-321.
14. Ito, A., Kishi, F., Saito, N., Kazumi, Y. & Mitarai, S. (2005). Pulmonary Mycobacterium intermedium disease in an elderly man with healed pulmonary tuberculosis. J Clin Microbiol 43, 1473-1474.
15. Kik, M. J. L., Houwers, D. J. & Dinkla, A. (2010). Mycobacterium intermedium granulomatous pneumonia in a green oropendola (Psarocolius viridis). Vet Rec 167, 219-220.
16. Kirschner, P., Teske, A., Schröder, K.-H., Kroppenstedt, R. M., Wolters, J. & Böttger, E. C. (1992). Mycobacterium confluentis sp. nov. Int J Syst Bacteriol 42, 257-262.
17. Magee, J. G. & Ward, A. C. (2012). Genus I. Mycobacterium Lehmann and Neuman 1896, 363AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 5, pp. 312-375. Edited by M. Goodfellow, P. Kämpfer, H.-J. Busse, M. E. Trujillo, K.-I. Suzuki, W. Ludwig & W. B. Whitman. New York: Springer.
18. Meier, A., Kirschner, P., Schröder, K.-H., Wolters, J., Kroppenstedt, R. M. & Böttger, E. C. (1993). Mycobacterium intermedium sp. nov. Int J Syst Bacteriol 43, 204-209.
19. Mignard, S. & Flandrois, J.-P. (2007). Identification of Mycobacterium using the EF-Tu encoding (tuf) gene and the tmRNA encoding (ssrA) gene. J Med Microbiol 56, 1033-1041.
20. Mignard, S. & Flandrois, J.-P. (2008). A seven-gene, multilocus, genus-wide approach to the phylogeny of mycobacteria using supertrees. Int J Syst Evol Microbiol 58, 1432-1441.
21. Schinsky, M. F., Morey, R. E., Steigerwalt, A. G., Douglas, M. P., Wilson, R. W., Floyd, M. M., Butler, W. R., Daneshvar, M. I., Brown-Elliott, B. A. & other authors (2004). Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates. Int J Syst Evol Microbiol 54, 1653-1667.
22. Staden, R., Beal, K. F. & Bonfield, J. K. (2000). The Staden package, 1998. Methods Mol Biol 132, 115-130.
23. Tortoli, E. (2003). Impact of genotypic studies on mycobacterial taxonomy: the new mycobacteria of the 1990s. Clin Microbiol Rev 16, 319-354.
24. Tortoli, E. (2006). The new mycobacteria: an update. FEMS Immunol Med Microbiol 48, 159-178.
25. Vincent, V., Brown-Elliott, B. A., Jost, K. C., Jr & Wallace, R. J. (2003). Mycobacterium phenotypic and genotypic identification. In Manual of Clinical Microbiology, 8th edn, pp. 560-584. Edited by P. M. Murray, E. J. Baron, J. H. Jorgensen, M. A. Pfaller & R. J. Yolken. Washington, DC: American Society for Microbiology.