Interpreting Several Types of Measurements in Bioscience

Biomedical Vibrational Spectroscopy

Volumn , Issue , 2007, Pages 333-356

  Kohler, Achim ^a,b   Hanafi, Mohamed ^c   Bertrand, Dominique ^c   Qannari, El Mostafa ^c   Janbu, Astrid Oust ^d   Møretrø, Trond ^a   Naterstad, Kristine ^a   Martens, Harald ^a,b,e  

^a NORWEGIAN FOOD RESEARCH INSTITUTE   (Norway)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c ONIRIS   (France)

^d PO Box 6875 Rodelokka   (Norway)

^e UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

Sequencing or single nucleotide polymorphism (SNP) technologies; Standard normal variate (SNV) filtering; Vibrational biospectroscopic techniques

Indexed keywords

EID: 84889405829     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1002/9780470283172.ch15     Document Type: Chapter

References (42)

1. H. Martens, M. Martens, 2001. Multivariate Analysis of Quality: An Introduction. Chichester, UK: Wiley.
2. A. Kohler, C. Kirschner, A. Oust, H. Martens, 2005. Extended multiplicative signal correction as a tool for separation and characterization of physical and chemical information in Fourier transform infrared microscopy images of cryo-sections of beef loin. App. Spectros. 59: 707-716.
3. S. W. Bruun, A. Kohler, I. Adt, G. D. Sockalingum, M. Manfait, H. Martens, 2006. Correcting attenuated total reflaction-Fourier transform infrared spectra for water vapour and carbon dioxide. Appl. Spectros. 60: 1029-1039.
4. H. Martens, S. W. Bruun, I. Adt, G. D. Sockalingum, A. Kohler, 2007. Correction for temperature -and salt -effects of water in FTIR bio-spectroscopy by EMSC. J. Chemom. 20: 402-417.
5. S. N. Thennadil, H. Martens, A. Kohler, 2006. Physics-based multiplicative scatter correction approaches for improving the performance of calibration models. Appl. Spectros. 60: 315-321
6. H. Wold, 1966. Nonlinear Estimation by Iterative Least Squares Procedures, pp. 411-444. London: Wiley.
7. J. M. Farber, P. I. Peterkin, 2000. Listeria monocytogenes, In The microbiological safety of food, edited by B. M. Lund, T. C. Baird-Parker, G. W. Gould, pp. 1178-1232. Gaithersburg, MD: Aspen Publishers.
8. J. Delves-Broughton, P. Blackburn, R. J. Evans, J. Hugenholtz, 1996. Applications of the bacteriocin, nisin. Antonie Van Leeuwenhoek 69: 193-202.
9. T. Katla, T. Møretrø, I. Sveen, I. M. Aasen, L. Axelsson, L. M. Rørvik, K. Naterstad, 2002. Inhibition of Listeria monocytogenes in chicken cold cuts by addition of sakacin P and sakacin P-producing Lactobacillus sakei. J. Appl. Microbiol. 93: 191-196.
10. M. Ramnath, M. Beukes, K. Tamura, J. W. Hastings, 2000. Absence of a putative mannose-specific phosphotransferase system enzyme IIAB component in a leucocin A-resistant strain of Listeria monocytogenes, as shown by two-dimentional sodium dodecyl sulphate-polyacrylamide gel electrophoresis. Appl. Environ. Microbiol. 66: 3098-3101.
11. M. Ramnath, S. Arous, A. Gravesen, J. Hastings,Y.Héchard, 2004. Expression of mptC of Listeria monocytogenes induces sensitivity to class IIa bacteriocins in Lactococcus lactis. Microbiology 150: 2663-2668.
12. A. Gravesen, M. Ramnath, K. B. Rechinger, N. Andersen, L. Jänsch,Y.Héchard, J.W. Hastings, S. Knøchel, 2002. High-level resistance to class IIa bacteriocins is associated with one general mechanism in Listeria monocytogenes. Microbiology 148: 2361-2369.
13. V. Vadyvaloo, S. Arous, A. Gravesen, Y. Héchard, R. Chaunan-Haubrock, J. Hastings, M. Rautenbach, 2004. Cell-surface alterations in class IIa bacteriocin-resistant Listeria monocytogenes strains. Microbiology 150: 3025-3033.
14. T. Katla, K. Naterstad, M.Vancanneyt, J. Swings, L. Axelsson, 2003. Differences in susceptibility of Listeria monocytogenes strains to sakacin P, sakacin A, pediocin PA-1, and nisin. Appl. Environ. Microbiol. 69: 4431-4437.
15. A. Oust, T. Moretro, K. Naterstad, G. D. Sockalingum, I. Adt, M. Manfait, A. Kohler, 2006. Fourier transform infrared and Raman spectroscopy for characterization of Listeria monocytogenes strains. Appl. Environ. Microbiol. 72: 228-232.
16. L. M. Rørvik, D. Caugant, M. Yndestad, 1995. Contamination pattern of Listeria monocytogenes and other Listeria spp. in a salmon slaughterhouse and smoked salmon processing plant. Int. J. Food Microbiol. 25: 19-27.
17. B. Aase, G. Sundheim, S. Langsrud, L. M. Rørvik, 2000. Occurrence of and a possible mechanism for resistance to a quarternary ammonium compound in Listeria monocytogenes. Int. J. Food Microbiol. 62: 57-63.
18. H. Martens, J.P. Nielsen, S. B. Engelsen, 2003. Light scattering and light absorbance separated by extended multiplicative signal correction. Application to near-infrared transmission analysis of powder mixtures. Anal. Chem. 75: 394-404.
19. H. Martens, T. Næs, 1989. Multivariate Calibration. Chichester: Wiley & Sons.
20. F. Westad, H. Martens, 2000. Variable selection in near infrared spectroscopy based on significance testing in partial least squares regression J. Near Infrared Spectrosc. 8: 117-124.
21. A. Oust, B. Moen, H. Martens, K. Rudi, T. Naes, C. Kirschner, A. Kohler, 2006. Analysis of covariance patterns in gene expression data and FT-IR spectra. J. Microbiol. Methods 65: 573-584.
22. B. Moen, A. Oust, O. Langsrud, N. Dorrell, G.L.Marsden, J. Hinds, A. Kohler, B.W.Wren, K. Rudi, 2005. Explorative multifactor approach for investigating global survival mechanisms of Campylobacter jejuni under environmental conditions. Appl. Environ. Microbiol. 71: 2086-2094.
23. H. C. Bertram, A. Kohler, U. Boc̈ker, R. Ofstad, H. J. Andersen, 2006. Heat-induced changes in myofibrillar protein structures and myowater of two pork qualities. A combined FT-IR spectroscopy and low-field NMR relaxometry study. J. Agric. Food Chem. 54: 1740-1746.
24. U. Boc̈ker, R. Ofstad, H. C. Bertram, B. Egelandsdal, A. Kohler, 2006. Salt-induced changes in pork myofibrillar tissue investigated by FT-IR microspectroscopy and light microscopy. J. Agric. Food Chem. 54: 6733-6740.
25. Z.Y.Wu, H. C. Bertram, A.Kohler, U. Boc̈ker, R. Ofstad, H. J. Andersen, 2006. Influence of aging and salting on protein secondary structures and water distribution in uncooked and cooked pork.A combined FT-IR microspectroscopy and H-1 NMR relaxometry study. J. Agric. Food Chem. 54: 8589-8597.
26. G. Socrates, 2001. Infrared and Raman Characteristic Group Frequencies: Tables and Charts. Chichester: Wiley.
27. D. Chessel, M. Hanafi, 1996. Analyses de la co-inertie de K nuages de points. Rev. Stat. Appl. XLIV: 35-60.
28. M. Hanafi, G. Mazerolles, E. Dufour, E. M. Qannari, 2006. Common components and specific weight analysis and multiple coinertia analysis applied to the coupling of several measurement techniques. J. Chemom. 20: 172-183.
29. S.Wold, S. Hellberg,Y. Lundstedt, M. Sjostrom, H.Wold, 1987. Proceedings, Symposium on PLS Model Building: Theory and Application, Frankfurt am Main.
30. J.A. Westerhuis, T. Kourti, J. F. Macgregor, 1998. Analysis of multiblock and hierarchical PCA and PLS models. J. Chemometrics 12: 301-321.
31. H. Hotelling, 1935. The most predictable criterion J. Educ. Psychol. 26: 139-142.
32. H. Hotelling, 1936. Relations between two blocks of variates. Biometrika 28: 321-377.
33. M. Hanafi, H. A. L. Kiers, 2006. Analysis of K blocks of Data with differentiel emphasis on agreement between and within blocks. Comput. Stat. Data Anal. 51: 1491-1508.
34. J. R.Kettenring, 1971. Canonical analysis of several blocks of variables. Biometrika 58: 433-451.
35. J. C. Gower, 1975. Generalised Procrustes analysis. Psychometrika 40: 33-51.
36. C. Lavit 1988. Analyse conjointe de tableaux quantitatifs. Paris: Masson.
37. J. D. Carroll, J. J. Chang, 1970. Analysis of individual differences in multidimensional scaling via an N-way generalisation of "Eckart-Young" decomposition. Psychometrika 35: 283-319.
38. E. M. Qannari, I. Wakeling, P. Courcoux, J. H. MacFie, 2000. Defining the underlying sensory dimensions. Food Qual. Preference 11: 151-154.
39. J. A. Westerhuis, A. K. Smilde, 2001. Deflation in multiblock PLS. J. Chemom. 15: 485-493.
40. J. B. Lohmöller, 1989. Latent Variables Path Modeling with Partial Least Squares. Heidelberg: Physica-Verlag.
41. M. Tenenhaus, J. P. Gauchi, C. Ménardo, 1995. Régression PLS et applications (PLS regression and applications). Rev. Stat. Appl. 43: 7-63.
42. H. Wold, 1982. Soft modelling: the basic design and some extensions. In System under Indirect Observation, edited by K. G. Jöreskog, H. Wold, pp. 1-54. Amsterdam: North Holland.