Biocontrol of Rhizoctonia solani damping-off and promotion of tomato plant growth by endophytic actinomycetes isolated from native plants of Algerian Sahara

Microbiological Research

Volumn 169, Issue 1, 2014, Pages 59-65

  Goudjal, Yacine ^a,b   Toumatia, Omrane ^a   Yekkour, Amine ^a   Sabaou, Nasserdine ^a   Mathieu, Florence ^c   Zitouni, Abdelghani ^a  

^a Ecole Normale Superieure de Kouba   (Algeria)

^b UNIVERSITY OF LAGHOUAT   (Algeria)

^c UNIVERSITÉ DE TOULOUSE   (France)

Author keywords

Biocontrol; Damping off; Endophytic actinomycetes; Rhizoctonia solani; Tomato

Indexed keywords

16S RDNA SEQUENCE; ANTI-FUNGAL ACTIVITY; DAMPING-OFF; ENDOPHYTIC ACTINOMYCETES; PHYLOGENETIC STUDIES; RHIZOCTONIA SOLANI; TAXONOMIC POSITION; TOMATO;

BACTERIA; BIOCONTROL; DAMPING; FRUITS;

SEED;

BIOCONTROL AGENT; COATING; DAMPING-OFF; DISEASE INCIDENCE; FRUIT; PATHOGEN; PLANT; ROOT; SEEDLING;

SAHARA;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); LYCOPERSICON ESCULENTUM; STREPTOMYCES; STREPTOMYCES CYANEOFUSCATUS; STREPTOMYCES MUTABILIS; THANATEPHORUS CUCUMERIS;

BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

AFRICA; ALGERIA; ARTICLE; BIOLOGICAL PEST CONTROL; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DAMPING OFF DISEASE; DNA SEQUENCE; ENDOPHYTE; ENDOPHYTIC ACTINOMYCETES; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; ORGANISMAL INTERACTION; PHYLOGENY; PLANT DISEASE; PLANT ROOT; RHIZOCTONIA; RHIZOCTONIA SOLANI; STREPTOMYCES; TOMATO;

BIOCONTROL; DAMPING-OFF; ENDOPHYTIC ACTINOMYCETES; RHIZOCTONIA SOLANI; TOMATO;

AFRICA, NORTHERN; ALGERIA; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ENDOPHYTES; LYCOPERSICON ESCULENTUM; MICROBIAL INTERACTIONS; MOLECULAR SEQUENCE DATA; PEST CONTROL, BIOLOGICAL; PHYLOGENY; PLANT DISEASES; PLANT ROOTS; RHIZOCTONIA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; STREPTOMYCES;

EID: 84889099279     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2013.06.014     Document Type: Article

References (47)

1. Altier N.A., Thies J.A. Identification of resistance to Pythium seedling disease in alfalfa using a culture plate method. Plant Dis 1995, 79:341-346.
2. Becker B., Lechevalier M.P., Gordon R.E., Lechevalier H.A. Rapid differentiation between Nocardia and Streptomyces by paper chromatography of whole cell hydrolysates. J Appl Microbiol 1964, 12:421-423.
3. Boubetra D., Sabaou N., Zitouni A., Bijani C., Lebrihi A., Mathieu F. Taxonomy and characterization of new antibiotics produced by Saccharothrix SA198 isolated from a Saharan soil. Microbiol Res 2013, 168:223-230.
4. Chin-A-Woeng T.F.C., Bloemberg G.V., Van der Bij A.J., Van der Drift K.M.G.M., Schripsema J., Kroon B., et al. Biocontrol by phenazine-1- carboxamide producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Mol Plant-Microb Interact 1998, 11:1069-1077.
5. Chun J., Bae K.S., Moon E.Y., Jung S.O., Lee H.K., kim S.J. Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Micr 2000, 50:1909-1913.
6. Chung W.C., Huang J.W., Huang H.C. Formulation of a soil biofungicide for control of damping-off of Chinese cabbage (Brassica chinensis) caused by Rhizoctonia solani. Biol Control 2005, 32:287-294.
7. Coa L., Qiu Z., You J., Tan H., Zhou S. Isolation and characterization of endophytic Streptomyces from surface-sterilized tomato (Lycopersicon esculentum) roots. Lett Appl Microbiol 2004, 39:425-430.
8. Coa L., Qiu Z., You J., Tan H., Zhou S. Isolation and characterization of endophytic streptomycetes antagonistis of Fusarium wilt pathogen from surface-sterilized banana roots. FEMS Microbiol Lett 2005, 247:147-152.
9. Dhanasekaran D., Sivamani P., Panneerselvam A., Thajuddin N., Rajakumar G., Selvamani S. Biological control of tomato seedling damping off with Streptomyces sp. Plant Pathol J 2005, 4:91-95.
10. El-Tarabily K.A., Nasser A.H., Hardy G.E., Sivaithamparam K. Plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber, by endophytic actinomycetes. J Appl Microbiol 2008, 106:13-26.
11. Errakhi R., Bouton F., Lebrihi A., Barakate M. Evidence of biological control capacities of Streptomyces spp. against Sclerotium rolfsii responsible for damping-off disease in sugar beet (Beta vulgaris L.). World J Microbiol Biotechnol 2007, 23:1503-1509.
12. Fravel D.R. Role of antibiosis in the biocontrol of plant diseases. Annu Rev Phytopathol 1988, 26:75-91.
13. Gees R., Coffe M.D. Evaluation of a strain of Myrothecium raridum as a potential biological agent against Phytophthora cinnamomi. Phytopathology 1989, 79:1079-1084.
14. Goodfellow M., Simpson K.E. Ecology of streptomycetes. Frontiers Appl Microbiol 1987, 2:97-125.
15. Gopalakrishnan S., Pande S., Sharma M., Humayun P., Keerthi Kiran B.K., Sandeep D., et al. Evaluation of actinomycete isolates obtained from herbal vermicompost for the biological control of Fusarium wilt of chickpea. Crop Prot 2011, 30:1070-1078.
16. Goudjal Y., Toumatia O., Sabaou N., Barakate M., Mathieu F., Zitouni A. Endophytic actinomycetes from spontaneous plants of Algerian Sahara: indole-3-acetic acid production and tomato plants growth promoting activity. World J Microbiol Biotechnol 2013, 10.1007/s11274-013-1344-y.
17. Grissbuhler H., Brenneisen P., Fisher H.P. Frontiers in crop production: chemical research objectives. Science 1982, 217:505-510.
18. Hajlaou M.R., Traquair J.A., Jarvis W.R., Belanger R.R. Antifungal activity of extracellular metabolites produced by Sporothrix flocculosa. Biocontrol Sci Technol 1994, 4:229-237.
19. Hamdali H., Hafidi M., Virolle M.J., Ouhdouch Y. Growth promotion and protection against damping-off of wheat by two rock phosphate solubilizing actinomycetes in a P-deficient soil under greenhouse conditions. Appl Soil Ecol 2008, 40:510-517.
20. Hayakawa M., Nonomura H. Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J Ferment Technol 1987, 65:501-509.
21. Huang X., Zhang N., Yong X., Yang X., Shen Q. Biocontrol of Rhizoctonia solani damping-off disease in cucumber with Bacillus pumilus SQR-N43. Microbiol Res 2011, 167:135-143.
22. Ilic S.B., Konstantinovic S.S., Todorovic Z.B., Lazic M.L., Veljkovic V.B., Jokovic N., et al. antimicrobial activity of the bioactive metabolites in streptomycete isolates. Microbiology 2007, 76:421-428.
23. Kämpfer P. Genus I. Streptomyces Waksman and Henrici 1943. Bergey's manual of systematic bacteriology 2012, Vol. 5:1455-1767. Springer, New York Dordrecht, Heidelberg, London.
24. Kennedy A.C. Bacterial diversity in agroecoystems agriculture. Ecosyst Environ 1999, 74:65-76.
25. Kuklinsky-Sobral J., Araujo W.L., Mendes R., Geraldi I.O., Pizzirani-Kleiner A.A., Azevedo J.L. Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Environ Microbiol 2004, 6:1244-1251.
26. Kunoh H. Endophytic actinomycetes: attractive biocontrol agents. J Gen Plant Pathol 2002, 68:249-252.
27. Lahdenperä M.L., Simon E., Uoti J. Mycostop - a novel biofungicide based on Streptomyces bacteria. Biotic interactions and soil-borne disease 1991, 258-263. Elsevier, Amsterdam. A.B.R. Beemster, G.J. Bollen, M. Gerlagh, M.A. Ruissen, B. Schippers, A. Tempel (Eds.).
28. Liu D., Coloe S., Baird R., Pedersen J. Rapid mini-preparation of fungal DNA for PCR. J Clin Microbiol 2000, 38:471.
29. Meschke H., Schrempf H. Streptomyces lividans inhibits the proliferation of the fungus Verticillium dahliae on seeds and roots of Arabidopsis thaliana. Microb Biotechnol 2010, 3:428-443.
30. Misaghi I.J., Donndelinger I.J. Endophytic bacteria in symptom-free cotton plants. Phytopathology 1990, 80:808-811.
31. Moussa T.A.A. Studies on biological control of sugar beet pathogen Rhizoctonia solani Kühn. Online J Biol Sci 2002, 2:800-804.
32. Parmeter J.R., Sherwood R.T., Platt W.D. Anastomosis grouping among isolates of Thanatephorus cucumeris. Phytopathology 1969, 59:1270-1278.
33. Patil H.J., Srivastava A.K., Kumar S., Chaudhari B.L., Arora D.K. Selective isolation, evaluation and characterization of antagonistic actinomycetes against Rhizoctonia solani. World J Microbiol Biotechnol 2010, 26:2163-2170.
34. Pouget M. Les relations sol-végétation dans la steppe sud-algéroise 1980, 569. Orstom, Paris.
35. 2 by a molybdenum-CO dehydrogenase. J Biol Chem 1997, 272:26627-26633.
36. Sabaou N., Bounaga N. Actinomycètes parasites de champignons: étude des espèces, spécificité de l'action parasitaire au genre Fusarium et antagonisme dans le sol envers Fusarium oxysporum f. sp. albedinis (Killian et Maire) Gordon. Can J Microbiol 1987, 33:445-451.
37. Sadeghi A., Hessan A.R., Askari H., Aghighi S., Shahidi Bonjar G.H. Biological control potential of two Streptomyces isolates on Rhizoctonia solani, the causal agent of damping-off of sugar beet. Pak J Biol Sci 2006, 9:904-910.
38. Schulz B., Wanke U., Draeger S., Aust H.J. Endophytes from herbaceous plants and shrubs: effectiveness of surface sterilization methods. Mycol Res 1993, 97:1447-1450.
39. Shahidi Bonjar G.H., Barkhordar B., Pakgohar N., Aghighi S., Biglary S., Rashid Farrokhi P., et al. Biological control of Phytophthora drechsleri Tucker, the causal agent of pistachio gummosis, under greenhouse conditions by use of actinomycetes. Plant Pathol J 2006, 5:20-23.
40. Shen D. Microbial diversity and application of microbial products for agricultural purposes in China agriculture. Ecosyst Environ 1997, 62:237-245.
41. Shi Y., Lou K., Li C. Promotion of plant growth by phytohormone-producing endophytic microbes of sugar beet. Biol Fertil Soils 2009, 45:645-653.
42. Shirling E.B., Gottlieb D. Methods for characterization of Streptomyces species. Int J Syst Bacteriol 1966, 16:313-340.
43. Suzuki S., Yamamoto K., Okuda T., Nishio M., Nakanishi N., Komatsubara S. Selective isolation and distribution of Actinomadura rugatobispora strains in soil. Actinomycetologica 2000, 14:27-33.
44. Taechowisian T., Peberdy J.F., Lumyong S. Isolation of endophytic actinomycetes from selected plants and their antifungal activity. World J Microbiol Biotechnol 2003, 19:381-385.
45. Trejo-Estrada S.R., Sepulveda I.R., Crawford D.L. In vitro and in vivo antagonism of Streptomyces violaceusniger YCED9 against fungal pathogens of turfgrass. World J Microbiol Biotechnol 1998, 21:81-90.
46. Wilson D. Endophyte - the evolution of a term and clarification of its use and definition. Oikos 1995, 73:274-276.
47. Xiao K., Kinkel L.L., Samac D.A. Biological control of Phytophthora root rots on alfalfa and soybean with Streptomyces. Biol Control 2002, 23:285-295.