Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars

Microbiological Research

Volumn 169, Issue 1, 2014, Pages 83-98

  Ji, Sang Hye ^a   Gururani, Mayank Anand ^b   Chun, Se Chul ^a  

^a Konkuk University   (South Korea)

^b Jeju National University   (South Korea)

Author keywords

Diazotrophic bacteria; Endophytic; Nitrogen fixing; Plant growth promoting bacteria (PGPB); Siderophore

Indexed keywords

DIAZOTROPHIC BACTERIA; ENDOPHYTIC; NITROGEN-FIXING; PLANT GROWTH-PROMOTING BACTERIA; SIDEROPHORES;

BACTERIOLOGY; GENES; NITROGEN FIXATION; PLANTS (BOTANY); SEED;

BACTERIA;

BACTERIUM; CULTIVAR; DNA; GENE; ISOLATED POPULATION; NITROGEN FIXATION; PHOSPHATE; PLANT; RICE; SIDEROPHORE;

BACILLUS (BACTERIUM); BACTERIA (MICROORGANISMS); KLEBSIELLA; MICROBACTERIUM;

ANTIFUNGAL AGENT; BACTERIAL DNA; INDOLEACETIC ACID DERIVATIVE; NITROGENASE REDUCTASE; OXIDOREDUCTASE; RIBOSOME DNA; RNA 16S; SIDEROPHORE;

ARTICLE; BACTERIUM; BIOMASS; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; DIAZOTROPHIC BACTERIA; DNA SEQUENCE; DRUG EFFECT; ENDOPHYTE; ENDOPHYTIC; FUNGUS; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; KOREA; METABOLISM; MICROBIOLOGY; NITROGEN FIXATION; NITROGEN-FIXING; PHYLOGENY; PLANT GROWTH-PROMOTING BACTERIA (PGPB); PLANT LEAF; PLANT ROOT; PLANT STEM; RICE;

DIAZOTROPHIC BACTERIA; ENDOPHYTIC; NITROGEN-FIXING; PLANT GROWTH-PROMOTING BACTERIA (PGPB); SIDEROPHORE;

ANTIFUNGAL AGENTS; BACTERIA; BIOMASS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; ENDOPHYTES; FUNGI; INDOLEACETIC ACIDS; KOREA; NITROGEN FIXATION; ORYZA SATIVA; OXIDOREDUCTASES; PHYLOGENY; PLANT LEAVES; PLANT ROOTS; PLANT STEMS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 84889098512     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2013.06.003     Document Type: Article

References (71)

1. Ali B., Sabri A.N., Hasnain S. Rhizobacterial potential to alter auxin content and growth of Vigna radiate (L.). World J Microbiol Biotechnol 2010, 26:1379-1384.
2. Ashrafuzzaman M., Hossen F.A., Ismail M.R., Hoque M.A., Islam M.Z., Shahidullah S.M., et al. Efficiency of plant growth promoting Rhizobacteria (PGPR) for the enhancement of rice growth. Afr J Biotechnol 2009, 8:1247-1252.
3. Arora N.K., Kang S.C., Maheshwari D.K. Isolation of siderophore-producing strains of Rhizobium meliloti and their biocontrol potential against Marcrophomina phaseolina that causes charcoal rot of groundnut. Curr Sci 2001, 81:673-677.
4. Bhattacharyya P.N., Jha D.K. Plant growth promoting rhizobacteria (PGPR): emergence in agriculture. World J Microbiol Biotechnol 2012, 28:1327-1350.
5. Carrillo-Castaneda G., Munoz J.J., Peralta-Videa J.R., Gomez E., Gardea-Torresdey J.L. Modulation of uptake and translocation of iron and copper from root to shoot in common bean by siderophore-producing microorganisms. J Plant Nutr 2005, 28:1853-1865.
6. Choi E.H., Lee S.E., Yoon K.S., Kwon D.K., Sohn J.K., Park S.H., et al. Isolation of nitrogen-fixing bacteria from gramineous crops and measurement of nitrogenase activity. Kor J Microbiol Biotechnol 2003, 31:18-24.
7. Dawe D., Dobermann A., Moya P., Abdulrachman S., Singh B., Lal P., et al. How widespread are yield declines in long-term rice experiments in Asia?. Field Crops Res 2000, 66:175-193.
8. Desai S., Reddy M.S., Kloepper J.W. Comprehensive testing of biocontrol agents. Biological control of crop diseases 2002, 387-420. Marcel Dekker, Inc., NY, Basel, USA. S.S. Gnanamanickam (Ed.).
9. Dilworth M.J. Dinitrogen fixation. Annu Rev Plant Physiol 1974, 25:81-114.
10. Dimkpa C., Svatos A., Merten D., Buchel G., Kothe E. Hydroxamate siderophores produced by Streptomyces acidiscabies E13 bind nickel and promote growth in cowpea (Vigna unguiculata L.) under nickel stress. Can J Microbiol 2008, 54:163-172.
11. Dimkpa C., Merten D., Svatoš A., Bur̈chel G., Kothe E. Siderophores mediate reduced and increased uptake of cadmium by Streptomyces tendae F4 and sunflower (Helianthus annuus), respectively. J Appl Microbiol 2009, 107:1687-1696.
12. Dobbelaere S., Vanderleyden J., Okon Y. Plant growth promoting effects of diazotrophs in the rhizosphere. Crit Rev Plant Sci 2003, 22:107-149.
13. Egamberdiyeva D. The effect of plant growth promoting bacteria on growth and nutrient uptake of maize in two different soils. Appl Soil Ecol 2007, 36:184-189.
14. El-Banana N., Winkelmann G. Pyrrolnitrin from Burkholderia cepacia: antibiotic activity against fungi and novel acrivities against streptonycetes. J Appl Microbiol 1988, 85:69-78.
15. Frey-Klett P., Chavatte M., Clausse M.L., Courrier S., Roux C.L., Raaijmakers J., et al. Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. New Phytol 2005, 165:317-328.
16. Gaspar T., Kevers C., Penel C., Greppin H., Reid D.M., Thorpe T.A. Plant hormones and plant growth regulators in plant tissue culture. In vitro Plant Cell Dev Biol 1996, 32:272-289.
17. Glick B.R. The enhancement of plant growth by free living bacteria. Can J Microbiol 1995, 41:109-114.
18. Gordon S.A., Weber R.P. Colorimetric estimation of indole acetic acid. Plant Physiol 1950, 26:192-195.
19. Gupta A., Saxena A.K., Gopal M., Tilak K.V.B.R. Effect of plant growth promoting rhizobacteria on competitive ability of introduced Bradyrhizobium sp. (Vigna) for nodulation. Microbiol Res 1998, 153:113-117.
20. Gururani M.A., Upadhyaya C.P., Baskar V., Venkatesh J., Nookaraju A., Park S.W. Plant growth-promoting rhizobacteria enhance abiotic stress tolerance in Solanum tuberosum through inducing changes in the expression of ROS-scavenging enzymes and improved photosynthetic performance. J Plant Growth Regul 2012, http://dx.doi.org/10.1007/s00344-012-9292-6.
21. Haas H., Défago G. Biological control of soil-borne pathogens by fluorescent Pseudomonas. Nature 2005, 3:307-319.
22. Hameeda B., Harini G., Rupela O.P., Wani S.P., Reddy G. Growth promotion of maize by phosphate-solubilizing bacteria isolated from composts and macrofauna. Microbiol Res 2008, 163:234-242.
23. Heil M., Baldwin I. Costs of induced resistance: emerging experimental support for a slippery concept. Trend Plant Sci 2002, 7:61-67.
24. Idris S.E., Iglesias D.J., Talon M., Borriss R. Tryptophan-dependent production of indole-3-acetic acid (IAA) affects level of plant growth promotion by Bacillus amyloliquefaciens FZB42. Mol Plant Microbe Interact 2007, 20:619-626.
25. Idriss E.E., Makarewicz O., Farouk A., Rosner K., Greiner R., Bochow H., et al. Extracellular phytase activity of Bacillus amyloiquefaciens FZB45 contributes to its plant-growth-promoting effect. Microbiology 2002, 148:2097-2109.
26. Joseph B., Patra R.R., Lawrence R. Characterization of plant growth promoting rhizobacteria associated with chickpea (Cicer arietinum L.). Int J Plant Prod 2007, 2:141-152.
27. Kang S.H., Cho H.S., Cheong H., Ryu C.M., Kim J.F., Park S.H. Two bacterial entophytes eliciting both plant growth promotion and plant defense on pepper (Capsicum annuum L.). J Microbiol Biotechnol 2007, 17:96-103.
28. Khalid A., Arshad M., Zahir Z.A. Screening plant growth-promoting rhizobacteria for improving growth and yield of wheat. J Appl Microbiol 2004, 96:473-480.
29. Kirankumar R., Jagadeesh K.S., Krishnaraj P.U., Patil M.S. Enhanced growth promotion of tomato and nutrient uptake by plant growth promoting rhizobacterial isolates in presence of tobacco mosaic virus pathogen. Karnataka J Agric Sci 2008, 21:309-311.
30. Kim W.G., Weon H.Y., Lee S.Y. In vitro antagonistic effects of Bacilli isolates against four soilborne plant pathogenic fungi. Plant Pathol J 2008, 24:52-57.
31. Kloepper J.W., Leong J., Teintze M., Schroth M.N. Enhanced plant growth by siderophores produced by plant growth-promoting rhizobacteria. Nature 1980, 286:885-886.
32. Kloepper J.W., Schroth M.N. Potato rhizosphere colonization by plant growth-promoting rhizobacteria increases plant development and yield. Phytopathology 1981, 71:1078-1082.
33. Kloepper J.W., Lifshitz R., Zablotowicz R.M. Free-living bacterial inocula for enhancing crop productivity. Trends Biotechnol 1989, 7:39-43.
34. Kloepper J.W., Zablotowicz R.M., Tipping E.M., Lifshitz R. The rhizosphere and plant growth 1991, 315-326. Kluwer, Dordrecht, The Netherlands. K.L. Keister, P.B. Cregan (Eds.).
35. Kloepper J.W., Beauchamp C.J. A review of issues related to measuring of plant roots by bacteria. Can J Microbiol 1992, 38:1219-1232.
36. Kloepper J.W., Ryu C.M., Zhang S. Induced systemic resistance and promotion of plant growth by Bacillus spp. Phytopathology 2004, 94:1259-1266.
37. Kuklinsky-Sobral J., Araujo W.L., Mendes R., Geraldi I.O., Pizzirani-Kleiner A.A., Azevedo J.L. Isolation and characterization of soybean-associated bacteria and their potential for plant growth promotion. Envirion Microbiol 2004, 6:1244-1251.
38. Leveau H.J., Lindow S.E. Utilization of the plant hormone indole-3-acetic acid for growth by Pseudomonas putida strain 1290. J Appl Microbiol 2005, 71:2365-2371.
39. Lee S.E., Yi H.S., Park S.H., Ghim S.Y. Characterization of a rhizobacterium promoting early growth in maize. Kor J Microbiol Biotechnol 2005, 33:70-73.
40. Liu X., Zhao H., Chen S. Coloniation of maize and rice plants by strain Bacillus megaterium C4. Cur Microbiol 2006, 52:186-190.
41. Lopez M., Thomas B., Fortuagel P. Mutants of Bacillus subtilis blocked in acetoin reductase. Eur J Biochem 1973, 40:479-483.
42. Martinez-Viveros O., Jorquera M.A., Crowley D.E., Gajardo G., Mora M.L. Mechanisms and practical considerations involved in plant growth promotion by rhizobacteria. J Soil Sci Plant Nutr 2010, 10:293-319.
43. Mehta S., Nautiyal S.C. An efficient method for qualitative screening of phosphate-solubilizing bacteria. Cur Microbiol 2001, 43:51-56.
44. Milagres A., Machuca A., Napoleao D. Detection of siderophore production from several fungi and bacteria by a modification of chrome azurol S (CAS) agar plate assay. J Microbiol Methods 1999, 37:1-6.
45. Murphy J.F., Reddy M.S., Ryu C.M., Klopper J.W., Li R. Rhizobacteria-mediated growth promotion of tomato leads to protection against Cucumber mosaic virus. Virology 2003, 10:1301-1307.
46. Ng L.C., Sariah M., Sariam O., Radziah O., Abidin M.A.Z. Rice seed bacterization for promoting germination and seedling growth under aeroic cultivation system. Austr J Crop Sci 2012, 6:170-175.
47. Okon Y., Labandera-Gonzalez C.A. Agronomic applications of Azospirillum: an evaluation of 20 years wordwide field inoculation. Soil Biol Biochem 1994, 26:1591-1601.
48. Persello-Cartieaux F., Nussaume L., Robaglia C. Tales from the underground: molecular plant-rhizobacteria interactions. Plant Cell Environ 2003, 26:189-199.
49. Ramamoorthy V., Viswanathan R., Raguchander T., Prakasam V., Samiyappan R. Induction of systemic resistance by plant growth promoting rhizobacteria in crop plants against pests and disease. Crop Protect 2001, 20:1-11.
50. Rodriguez H., Fraga R. Phosphate solubilizing bacteria and their role in plant growth promotion. Biotechnol Adv 1999, 17:319-339.
51. Ryu C.M., Hu C.H., Reddy M.S., Kloepper J.W. Different signaling pathways of induced resistance by rhizobacteria in Arabidopsis thaliana against two pathovars of Pseudomonas syringae. New Phytol 2003, 160:413-420.
52. Ryu C.M., Farag M.A., Hu C.H., Reddy M.S., Kloepper J.W., Pare P.W. Bacterial volatiles induce systemic resistance in Arabidopsis. Plant Physiol 2004, 134:1017-1026.
53. Sachdev D., Agarwal V., Verma P., Shouche Y., Dhakephalkar P., Chopade B. Assessment of microbial biota associated with rhizosphere of wheat (Triticum aestivum) during flowering stage and their plant growth promoting traits. Internet J Microbiol 2009, http://dx.doi.org/10.5580/21a7.
54. Saravanakumar D., Kavino M., Raguchander T., Subbian P., Samiyappan R. Plant growth promoting bacteria enhance water stress resistance in green gram plants. Acta Physiol Plant 2011, 33:203-209.
55. Saharan B.S., Nehra V. Plant growth promoting rhizobacteria: a critical review. Life Sci Medicine Res 2011, 21:1-30.
56. Schwyn B., Neilands J.B. Universal chemical assay for the detection and determination of siderophores. Anal Biochem 1987, 160:47-56.
57. Seong K.Y., Shin P.G. Effect of siderophore on biological control of plant pathogens and promotion of plant growth by Pseudomonas fluorescens ps88. Agric Chem Biotechnol 1996, 39:20-24.
58. Stefan M., Mihasan M., Dunca S. Plant growth promoting rhizobacteria can inhibit the in vitro germination of Glycine max L seeds. Scientific Annals of University "Alexandru Ioan Cuza" Iasi. Sect Genet Mol Biol 2008, T. IX 3:105-110.
59. Steinbuchel A., Frund C., Jendrossek D., Schlegel H.G. Isolation of mutants of Alcaligenes eutrophus unable to derepress the fermentative alcohol dehydrogenase. Arch Microbiol 1987, 148:178-186.
60. Stoltzfus J., So R., Malarvizhi P.P., Ladha J.K., de Bruijn F.J. Isolation of endophytic bacteria from rice and assessment of their potential for supplying rice with biologically fixed nitrogen. Plant Soil 1997, 194:25-36.
61. Vauterin L., Swings J. Are classification and phytopathological diversity compatible in Xanthomonas?. J Ind Microbiol Biotechnol 1997, 19:77-82.
62. Wahyudi A.T., Astuti R.P., Widyawati A., Meryandini A.A., Nawangsih A.A. Characterization of Bacillus sp. strains isolated from rhizosphere of soybean plants for their use as potential plant growth for promoting rhizobacteria. J Microbiol Antimicrob 2011, 3:34-40.
63. Weisburg W.G., Barns S.M., Pelletier D.A., Lane D.J. 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 1991, 173:697-703.
64. Welbaum G., Sturz A.V., Dong Z., Nowak J. Fertilizing soil microorganisms to improve productivity of agroecosystems. Crit Rev Plant Sci 2004, 23:175-193.
65. Yang T., Law D.M., Davies P.J. Magnitude and kinetics of stem elongation induced by exogenous indole-3-acetic acid in intact light grown pea seedling. Plant Physiol 1993, 102:717-724.
66. Yao A.V., Bochow H., Karimov S., Boturov U., Sanginboy S., Sharipov K. Effect of FZB24 Bacillus subtilis as a biofertilizer on cotton yields in field tests. Arch Phytopathol Plant Protect 2006, 39:1-6.
67. Yasmin F., Othman R., Saad M.S., Sijam K. Screening for beneficial properties of rhizobacteria isolated from weet potato rhizosphere. Afr J Biotechnol 2007, 6:49-52.
68. Young J.P.W. Phylogenetic classication of nitorogen-fixing organism. Biological nitrogen fixation 1992, 43-86. Chapman and Hall, New York. G. Stacy, R.H. Burris, H.J. Evans (Eds.).
69. Young J.P.W. Molecular phylogeny of rhizobia and their relatives. New horizons in nitrogen fixation 1993, 87-592. Kluwer Academic Publishers, London. R. Palacios, J. Mora, W.E. Newton (Eds.).
70. Zehnder G.W., Murphy J.F., Sikora E.J., Kloepper J.W. Application of rhizobacteria for induced resistance. Eur J Plant Pathol 2001, 107:39-50.
71. Zhang N., Wu K., He X., Li S.Q., Zhang Z.H., Shen B., et al. A new bioorganic fertilizer can effectively control banana wilt by strong colonization with Bacillus subtilis N11. Plant Soil 2011, 344:87-97.