메뉴 건너뛰기




Volumn 2, Issue 2, 2012, Pages 329-340

Population genomics of resource exploitation: Insights from gene expression profiles of two Daphnia ecotypes fed alternate resources

Author keywords

Divergence; Phenotypic plasticity; Resource assimilation; Seston; Transcriptome

Indexed keywords

DAPHNIA; PODOHEDRIELLA FALCATA;

EID: 84889067501     PISSN: None     EISSN: 20457758     Source Type: Journal    
DOI: 10.1002/ece3.30     Document Type: Article
Times cited : (8)

References (48)
  • 1
    • 4444358439 scopus 로고    scopus 로고
    • Bmp4 and morphological variation of beaks in Darwin's finches
    • Abzhanov, A.,M. Protas, B. R. Grant, P. R. Grant, and C. J. Tabin. 2004. Bmp4 and morphological variation of beaks in Darwin's finches. Science 305:1462-1465.
    • (2004) Science , vol.305 , pp. 1462-1465
    • Abzhanov, A.1    Protas, M.2    Grant, B.R.3    Grant, P.R.4    Tabin, C.J.5
  • 3
    • 0035899901 scopus 로고    scopus 로고
    • The generation and diversification of butterfly eyespot color patterns
    • Brunetti, C. R., J. E. Selegue, and A. Monteiro. 2001. The generation and diversification of butterfly eyespot color patterns. Curr. Biol. 11:1578-1585.
    • (2001) Curr. Biol. , vol.11 , pp. 1578-1585
    • Brunetti, C.R.1    Selegue, J.E.2    Monteiro, A.3
  • 4
    • 44649165061 scopus 로고    scopus 로고
    • Stoichiometric relationships in vernal pond plankton communities
    • Caceres, C. E., A. J. Tessier, A. Andreou, and M. A. Duffy. 2008. Stoichiometric relationships in vernal pond plankton communities. Freshw. Biol. 53:1291-1302.
    • (2008) Freshw. Biol. , vol.53 , pp. 1291-1302
    • Caceres, C.E.1    Tessier, A.J.2    Andreou, A.3    Duffy, M.A.4
  • 5
    • 0021875601 scopus 로고
    • Developmental and functional analysis of Jonah gene expression
    • Carlson, J. R., and D. S. Hogness. 1985a. Developmental and functional analysis of Jonah gene expression. Dev. Biol. 108:355-368.
    • (1985) Dev. Biol. , vol.108 , pp. 355-368
    • Carlson, J.R.1    Hogness, D.S.2
  • 6
    • 0021799620 scopus 로고
    • The Jonah genes - a new multigene family in Drosophila melanogaster
    • Carlson, J. R., and D. S. Hogness. 1985b. The Jonah genes - a new multigene family in Drosophila melanogaster. Dev. Biol. 108:341-354.
    • (1985) Dev. Biol. , vol.108 , pp. 341-354
    • Carlson, J.R.1    Hogness, D.S.2
  • 8
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Colbourne, J. K., M. E. Pfrender, and D. Gilbert. 2011. The ecoresponsive genome of Daphnia pulex. Science 331:555-561.
    • (2011) Science , vol.331 , pp. 555-561
    • Colbourne, J.K.1    Pfrender, M.E.2    Gilbert, D.3
  • 9
    • 0033966148 scopus 로고    scopus 로고
    • Can quantity replace quality? Food choice, compensatory feeding, and fitness of marine mesograzers
    • Cruz-Rivera, E., and M. E. Hay. 2000. Can quantity replace quality? Food choice, compensatory feeding, and fitness of marine mesograzers. Ecology 81:201-219.
    • (2000) Ecology , vol.81 , pp. 201-219
    • Cruz-Rivera, E.1    Hay, M.E.2
  • 11
    • 0030766796 scopus 로고    scopus 로고
    • Photoperiodic response of sexual reproduction in the Daphnia pulex group is reversed in two distinct habitats
    • Deng, H.W. 1997. Photoperiodic response of sexual reproduction in the Daphnia pulex group is reversed in two distinct habitats. Limnol. Oceanogr. 42:609-611.
    • (1997) Limnol. Oceanogr. , vol.42 , pp. 609-611
    • Deng, H.W.1
  • 12
    • 0030797104 scopus 로고    scopus 로고
    • Keeping Daphnia out of the surface film with cetyl alcohol
    • Desmarais, K. H. 1997. Keeping Daphnia out of the surface film with cetyl alcohol. J. Plankton. Res. 19:149-154.
    • (1997) J. Plankton. Res. , vol.19 , pp. 149-154
    • Desmarais, K.H.1
  • 14
    • 0035089611 scopus 로고    scopus 로고
    • The senescence of Daphnia from risky and safe habitats
    • Dudycha, J. L. 2001. The senescence of Daphnia from risky and safe habitats. Ecol. Lett. 4:102-105.
    • (2001) Ecol. Lett. , vol.4 , pp. 102-105
    • Dudycha, J.L.1
  • 15
    • 0037905683 scopus 로고    scopus 로고
    • A multi-environment comparison of senescence between sister species of Daphnia
    • Dudycha, J. L. 2003. A multi-environment comparison of senescence between sister species of Daphnia. Oecologia 135:555-563.
    • (2003) Oecologia , vol.135 , pp. 555-563
    • Dudycha, J.L.1
  • 16
    • 2342596360 scopus 로고    scopus 로고
    • Mortality dynamics of Daphnia in contrasting habitats and their role in ecological divergence
    • Dudycha, J. L. 2004. Mortality dynamics of Daphnia in contrasting habitats and their role in ecological divergence. Freshw. Biol. 49:505-514.
    • (2004) Freshw. Biol. , vol.49 , pp. 505-514
    • Dudycha, J.L.1
  • 17
    • 39449092239 scopus 로고    scopus 로고
    • Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex
    • Eads, B. D., J. K. Colbourne, E. Bohuski, and J. Andrews. 2007. Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex. BMC Genomics 8.
    • (2007) BMC Genomics , pp. 8
    • Eads, B.D.1    Colbourne, J.K.2    Bohuski, E.3    Andrews, J.4
  • 18
    • 0001704695 scopus 로고
    • A quantitative genetic analysis of oviposition preference and larval performance on 2 hosts in the bruchid beetle Callosobruchus maculatus
    • Fox, C.W. 1993. A quantitative genetic analysis of oviposition preference and larval performance on 2 hosts in the bruchid beetle, Callosobruchus maculatus. Evolution 47:166-175.
    • (1993) Evolution , vol.47 , pp. 166-175
    • Fox, C.W.1
  • 19
    • 2442439625 scopus 로고
    • Procedures and recommendations for the culture and use of Daphnia in bioassay studies
    • Aquatic toxicology and hazard assessment 5th Conf. ASTM ST P766
    • Goulden, C. E., R. M. Comotto, J. A. J. Hendrickson, L. L. Henry, and K. L. Johnson. 1982. Procedures and recommendations for the culture and use of Daphnia in bioassay studies. Pp. 148-169 in Aquatic toxicology and hazard assessment. 5th Conf. Am. Soc. Testing Mater. ASTM STP 766.
    • (1982) Am. Soc. Testing Mater. , pp. 148-169
    • Goulden, C.E.1    Comotto, R.M.2    Hendrickson, J.A.J.3    Henry, L.L.4    Johnson, K.L.5
  • 20
    • 0001648227 scopus 로고
    • Polyphyletic origins of asexuality in Daphnia pulex 1. Breedingsystem variation and levels of clonal diversity
    • Hebert, P. D. N.,M. J. Beaton, S. S. Schwartz, and D. J. Stanton. 1989. Polyphyletic origins of asexuality in Daphnia pulex.1. Breedingsystem variation and levels of clonal diversity. Evolution 43:1004-1015.
    • (1989) Evolution , vol.43 , pp. 1004-1015
    • Hebert, P.D.N.1    Beaton, M.J.2    Schwartz, S.S.3    Stanton, D.J.4
  • 21
    • 63549083065 scopus 로고    scopus 로고
    • Ecological speciation in a cyclic parthenogen: sexual capability of experimental hybrids between Daphnia pulex and Daphnia pulicaria
    • Heier, C. R., and J. L. Dudycha. 2009. Ecological speciation in a cyclic parthenogen: sexual capability of experimental hybrids between Daphnia pulex and Daphnia pulicaria. Limnol. Oceanogr. 54:492-502.
    • (2009) Limnol. Oceanogr. , vol.54 , pp. 492-502
    • Heier, C.R.1    Dudycha, J.L.2
  • 22
    • 0028980874 scopus 로고
    • Seasonal succession and the strength of intraspecific and interspecific competition in a Daphnia assemblage
    • Hu, S. X. S., and A. J. Tessier. 1995. Seasonal succession and the strength of intraspecific and interspecific competition in a Daphnia assemblage. Ecology 76:2278-2294.
    • (1995) Ecology , vol.76 , pp. 2278-2294
    • Hu, S.X.S.1    Tessier, A.J.2
  • 23
    • 36148978574 scopus 로고    scopus 로고
    • Drosophila Niemann-Pick type C-2 genes control sterol homeostasis and steroid biosynthesis: a model of human neurodegenerative disease
    • Huang, X., J. T. Warren, J. A. Buchanan, L. I. Gilbert, andM. P. Scott. 2007. Drosophila Niemann-Pick type C-2 genes control sterol homeostasis and steroid biosynthesis: a model of human neurodegenerative disease. Development 134:3733-3742.
    • (2007) Development , vol.134 , pp. 3733-3742
    • Huang, X.1    Warren, J.T.2    Buchanan, J.A.3    Gilbert, L.I.4    Scott, M.P.5
  • 28
    • 0030303297 scopus 로고    scopus 로고
    • Juvenile growth rate as a measure of fitness in Daphnia
    • Lampert,W., and I. Trubetskova. 1996. Juvenile growth rate as a measure of fitness in Daphnia. Funct. Ecol. 10:631-635.
    • (1996) Funct. Ecol. , vol.10 , pp. 631-635
    • Lampert, W.1    Trubetskova, I.2
  • 29
    • 0025957034 scopus 로고
    • Trophic interactions and habitat segregation between competing Daphnia species
    • Leibold, M. A. 1991. Trophic interactions and habitat segregation between competing Daphnia species. Oecologia 86:510-520.
    • (1991) Oecologia , vol.86 , pp. 510-520
    • Leibold, M.A.1
  • 30
    • 58149203237 scopus 로고    scopus 로고
    • CDD: specific functional annotation with the Conserved Domain Database
    • Marchler-Bauer, A., J. B. Anderson, and F. Chitsaz. 2009. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37:D205-D210.
    • (2009) Nucleic Acids Res , vol.37
    • Marchler-Bauer, A.1    Anderson, J.B.2    Chitsaz, F.3
  • 31
    • 78651285748 scopus 로고    scopus 로고
    • CDD: A Conserved Domain Database for the functional annotation of proteins
    • Marchler-Bauer, A., S. Lu, J. B. Anderson, et al. 2011. CDD: A Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-229.
    • (2011) Nucleic Acids Res , vol.39
    • Marchler-Bauer, A.1    Lu, S.2    Anderson, J.B.3
  • 32
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. 2001. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 29:e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 33
    • 0033748278 scopus 로고    scopus 로고
    • Multi-locus genetic evidence for rapid ecologically based speciation in Daphnia
    • Pfrender, M. E., K. Spitze, and N. Lehman. 2000. Multi-locus genetic evidence for rapid ecologically based speciation in Daphnia. Mol. Ecol. 9:1717-1735.
    • (2000) Mol. Ecol. , vol.9 , pp. 1717-1735
    • Pfrender, M.E.1    Spitze, K.2    Lehman, N.3
  • 34
    • 35348883321 scopus 로고    scopus 로고
    • Influence of food quality on depth selection of Daphnia pulicaria
    • Reichwaldt, E. S., and G. Abrusan. 2007. Influence of food quality on depth selection of Daphnia pulicaria. J. Plankton. Res. 29:839-849.
    • (2007) J. Plankton. Res. , vol.29 , pp. 839-849
    • Reichwaldt, E.S.1    Abrusan, G.2
  • 35
    • 0027833361 scopus 로고
    • The influence of fluctuating resources on life-history - patterns of allocation and plasticity in female guppies
    • Reznick, D., and A. P. Yang. 1993. The influence of fluctuating resources on life-history - patterns of allocation and plasticity in female guppies. Ecology 74:2011-2019.
    • (1993) Ecology , vol.74 , pp. 2011-2019
    • Reznick, D.1    Yang, A.P.2
  • 36
    • 46249094102 scopus 로고    scopus 로고
    • qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis
    • Ritz, C., and A. N. Spiess. 2008. qpcR: an R package for sigmoidal model selection in quantitative real-time polymerase chain reaction analysis. Bioinformatics 24:1549-1551.
    • (2008) Bioinformatics , vol.24 , pp. 1549-1551
    • Ritz, C.1    Spiess, A.N.2
  • 37
    • 33644842727 scopus 로고    scopus 로고
    • Viral transgenesis of embryonic cell cultures from the freshwater microcrustacean Daphnia
    • Robinson, C. D., S. Lourido, and S. P.Whelan. 2006. Viral transgenesis of embryonic cell cultures from the freshwater microcrustacean Daphnia. J. Exp. Zool. A Comp. Exp. Biol. 305A:62-67.
    • (2006) J. Exp. Zool. A Comp. Exp. Biol. 305A , pp. 62-67
    • Robinson, C.D.1    Lourido, S.2    Whelan, S.P.3
  • 38
    • 29844432016 scopus 로고    scopus 로고
    • Convergent evolution and divergent selection: lizards at theWhite Sands ecotone
    • Rosenblum, E. B. 2006. Convergent evolution and divergent selection: lizards at theWhite Sands ecotone. Am. Nat. 167:1-15.
    • (2006) Am. Nat. , vol.167 , pp. 1-15
    • Rosenblum, E.B.1
  • 39
    • 4344631967 scopus 로고    scopus 로고
    • Adaptive reptile color variation and the evolution of the Mc1r gene
    • Rosenblum, E. B., H. E. Hoekstra, and M.W. Nachman. 2004. Adaptive reptile color variation and the evolution of the Mc1r gene. Evolution 58:1794-1808.
    • (2004) Evolution , vol.58 , pp. 1794-1808
    • Rosenblum, E.B.1    Hoekstra, H.E.2    Nachman, M.W.3
  • 40
    • 41449116067 scopus 로고    scopus 로고
    • Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins
    • Shaw, J. R., J. K. Colbourne, and J. C. Davey. 2007. Gene response profiles for Daphnia pulex exposed to the environmental stressor cadmium reveals novel crustacean metallothioneins. BMC Genomics 8.
    • (2007) BMC Genomics , pp. 8
    • Shaw, J.R.1    Colbourne, J.K.2    Davey, J.C.3
  • 41
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, andW. Huber, eds. Springer, New York, Page
    • Smyth, G. K. 2005. Limma: linear models for microarray data. in R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, andW. Huber, eds. Bioinformatics and computational biology solutions using R and bioconductor. Springer, New York, Page 397-420.
    • (2005) Bioinformatics and computational biology solutions using R and bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 42
    • 0000166131 scopus 로고
    • The PEG model of seasonal succession of planktonic events in fresh waters
    • Sommer, U., Z. M. Gliwicz,W. Lampert, and A. Duncan. 1986. The PEG model of seasonal succession of planktonic events in fresh waters. Archiv. Fur Hydrobiologie 106:433-471.
    • (1986) Archiv. Fur Hydrobiologie , vol.106 , pp. 433-471
    • Sommer, U.1    Gliwicz, Z.M.2    Lampert, W.3    Duncan, A.4
  • 43
    • 58449125795 scopus 로고    scopus 로고
    • Altered trans-regulatory control of gene expression in multiple anthocyanin genes contributes to adaptive flower color evolution inMimulus aurantiacus
    • Streisfeld, M. A., and M. D. Rausher. 2009. Altered trans-regulatory control of gene expression in multiple anthocyanin genes contributes to adaptive flower color evolution inMimulus aurantiacus.Mol. Biol. Evol. 26:433-444.
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 433-444
    • Streisfeld, M.A.1    Rausher, M.D.2
  • 44
    • 0033916713 scopus 로고    scopus 로고
    • A fundamental trade-off in resource exploitation by Daphnia and consequences to plankton communities
    • Tessier, A. J., M. A. Leibold, and J. Tsao. 2000. A fundamental trade-off in resource exploitation by Daphnia and consequences to plankton communities. Ecology 81:826-841.
    • (2000) Ecology , vol.81 , pp. 826-841
    • Tessier, A.J.1    Leibold, M.A.2    Tsao, J.3
  • 45
    • 0036743101 scopus 로고    scopus 로고
    • Trading off the ability to exploit rich versus poor food quality
    • Tessier, A. J., and P.Woodruff. 2002. Trading off the ability to exploit rich versus poor food quality. Ecol. Lett. 5:685-692.
    • (2002) Ecol. Lett. , vol.5 , pp. 685-692
    • Tessier, A.J.1    Woodruff, P.2
  • 46
    • 70350460234 scopus 로고    scopus 로고
    • Methods for meiotic chromosome preparation, immunofluorescence and fluorescence in situ hybridization in Daphnia pulex
    • Tsuchiya, D., B. D. Eads, and M. E. Zolan. 2009. Methods for meiotic chromosome preparation, immunofluorescence and fluorescence in situ hybridization in Daphnia pulex. Methods Mol. Biol. 558:235-249.
    • (2009) Methods Mol. Biol. , vol.558 , pp. 235-249
    • Tsuchiya, D.1    Eads, B.D.2    Zolan, M.E.3
  • 47
    • 58149199579 scopus 로고    scopus 로고
    • FlyBase: enhancing Drosophila gene ontology annotations
    • Tweedie, S., M. Ashburner, and K. Falls. 2009. FlyBase: enhancing Drosophila gene ontology annotations. Nucleic Acids Res. 37:D555-D559.
    • (2009) Nucleic Acids Res , vol.37
    • Tweedie, S.1    Ashburner, M.2    Falls, K.3
  • 48
    • 4444230304 scopus 로고    scopus 로고
    • Trade-offs in Daphnia habitat selection
    • Winder, M., P. Spaak, andW. M. Mooij. 2004. Trade-offs in Daphnia habitat selection. Ecology 85:2027-2036.
    • (2004) Ecology , vol.85 , pp. 2027-2036
    • Winder, M.1    Spaak, P.2    Mooij, W.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.