Relational patterns in OWL and their application to OBO

CEUR Workshop Proceedings

Volumn 614, Issue , 2010, Pages

  Hoehndorf, Robert ^a   Oellrich, Anika ^a   Dumontier, Michel ^b   Kelso, Janet ^d   Herre, Heinrich ^c   Rebholz Schuhmann, Dietrich ^a  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b CARLETON UNIVERSITY   (Canada)

^c UNIVERSITY OF LEIPZIG   (Germany)

^d MAX PLANCK INSTITUTE FOR EVOLUTIONARY ANTHROPOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMEDICAL DOMAIN; DIRECTED ACYCLIC GRAPH (DAG); INTUITIVE INTERFACES; ONTOLOGY DESIGN; OWL ONTOLOGIES;

SEMANTICS;

BIRDS;

EID: 84889014459     PISSN: 16130073     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (16)

1. Ashburner, M., et al.: Gene ontology: Tool for the uni-cation of biology. the gene ontology consortium. Nat Genet 25(1), 25-29 (May 2000).
2. Baader, F.: The Description Logic Handbook : Theory, Implementation and Ap- plications. Cambridge University Press (January 2003).
3. Bard, J., Rhee, S.Y., Ashburner, M.: An ontology for cell types. Genome Biology 6(2) (2005).
4. Christian Bizer, T.H., Berners-Lee, T.: Linked data - The story so far. International Journal on Semantic Web and Information Systems (2009), in press.
5. Eilbeck, K., Lewis, S.E., Mungall, C.J., Yandell, M., Stein, L., Durbin, R., Ash- burner, M.: The sequence ontology: A tool for the uni-cation of genome annota- Tions. Genome Biology 6(R55) (2005).
6. Hoehndorf, R., Ngomo, A.C.N., Kelso, J.: Applying the functional abnormality ontology pattern to anatomical functions. Journal for Biomedical Semantics (2010).
7. Horridge, M., Bechhofer, S., Noppens, O.: Igniting the owl 1.1 touch paper: The owl api. In: Proceedings of OWLEd 2007: Third International Workshop on OWL Experiences and Directions (2007).
8. Horridge, M., et al.: The Manchester OWL Syntax. Proc. of the 2006 OWL Expe- riences and Directions Workshop (OWL-ED2006) (2006).
9. Horrocks, I.: OBO Flat File Format Syntax and Semantics and Mapping to OWL Web Ontology Language. Tech. rep., University of Manchester (March 2007), http://www.cs.man.ac.uk/horrocks/obo/.
10. Iannone, L., Rector, A., Stevens, R.: Embedding knowledge patterns into owl. In: Proceedings of European Semantic Web Conference 2009. pp. 218-232 (2009).
11. Moreira, D.A., Musen, M.A.: OBO to OWL: A protege OWL tab to read/save OBO ontologies. Bioinformatics 23(14), 1868-1870 (July 2007).
12. Motik, B., Shearer, R., Horrocks, I.: Hypertableau Reasoning for Description Log-ics. Journal of Artificial Intelligence Research 36, 165-228 (2009).
13. Mungall, C.: Mapping obo to owl. http://www.godatabase.org/dev/doc/ mapping-obo-to-owl.html (2005).
14. Schulz, S., Stenzhorn, H., Boeker, M., Smith, B.: Strengths and limitations of formal ontologies in the biomedical domain. RECIIS - Electronic Journal in Com-munication, Information and Innovation in Health 3(1), 31-45 (2009).
15. Smith, B., et al.: Relations in biomedical ontologies. Genome Biol 6(5) (2005).
16. Tirmizi, S.H., Miranker, D.: Obo2owl: Roundtrip between obo and owl. Tech. rep., University of Texas (2006), ftp://ftp.cs.utexas.edu/pub/techreports/ tr06-47.pdf.