Carbon source - A strong determinant of microbial community structure and performance of an anaerobic reactor

Journal of Biotechnology

Volumn 168, Issue 4, 2013, Pages 616-624

  Kundu, K ^a   Bergmann, I ^b   Hahnke, S ^b   Klocke, M ^b   Sharma, S ^a   Sreekrishnan, T R ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY DELHI   (India)

^b LEIBNIZ INSTITUTE FOR AGRICULTURAL ENGINEERING AND BIOECONOMY ATB   (Germany)

Author keywords

Anaerobic reactor; CARD FISH; DGGE; Methanogens; Q PCR

Indexed keywords

ANAEROBIC REACTOR; CARD-FISH; DGGE; FLUORESCENCE IN SITU HYBRIDIZATION; GRADIENT GEL ELECTROPHORESIS; MICROBIAL COMMUNITY STRUCTURES; Q-PCR; QUALITATIVE AND QUANTITATIVE ANALYSIS;

BACTERIA; ELECTROPHORESIS; FLUORESCENCE MICROSCOPY; GLUCOSE; METHANOGENS; POLYMERASE CHAIN REACTION; RNA; SEWAGE; SOCIAL SCIENCES;

CARBON;

GLUCOSE; INDUSTRIAL EFFLUENT; MOLASSES; RNA 16S;

ANAEROBIC REACTOR; ARTICLE; BIOREACTOR; CARBON SOURCE; CHEMICAL COMPOSITION; CORRELATION ANALYSIS; DENATURING GRADIENT GEL ELECTROPHORESIS; FLUORESCENCE IN SITU HYBRIDIZATION; GENE; METHANOBACTERIALES; METHANOGEN; METHANOSAETACEAE; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MILK; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SUGARCANE; TEMPERATURE; WASTE WATER;

ARCHAEA; METHANOBACTERIALES; METHANOSAETACEAE;

ANAEROBIC REACTOR; CARD-FISH; DGGE; METHANOGENS; Q-PCR;

ANAEROBIOSIS; BIOREACTORS; CARBON; GLUCOSE; METHANOBACTERIALES; METHANOSARCINALES; PHYLOGENY; RNA, RIBOSOMAL, 16S; WASTE WATER;

EID: 84888834879     PISSN: 01681656     EISSN: 18734863     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2013.08.023     Document Type: Article

References (32)

1. Acinas S.G., Marcelino L.A., Klepac-Ceraj V., Polz M.F. Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons. J. Bacteriol. 2004, 186:2629-2635.
2. Akarsubasi A.T., Ince O., Kirdar B., Oz N.A., Orhon D., Curtis T.P., Head I.M., Ince B.K. Effect of wastewater composition on archaeal population diversity. Water Res. 2005, 39:1576-1584.
3. Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 1990, 56:1919-1925.
4. Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 1995, 59:143-169.
5. Andrews J.H., Harris R.F. r- and K-selection in microbial ecology. Adv. Microb. Ecol. 1986, 9:99-147.
6. APHA, AWWA, WPCF, 1995. Standard methods for the examination of water and wastewater, 19th ed. Washington, DC American Public Health Association.
7. Batstone D.J., Keller J., Blackall L. The influence of substrate kinetics on the microbial community structure in granular anaerobic biomass. Water Res. 2004, 38:1390-1404.
8. Blume F., Bergmann I., Nettmann E., Schelle H., Rehde G., Mundt K., Klocke M. Methanogenic population dynamics during semi-continuous biogas fermentation and acidification by overloading. J. Appl. Microbiol. 2010, 109:441-450.
9. Boone D.R., Castenholz R.W., Garrity G.M. Bergey's manual of systematic bacteriology. The Archaea and the Deeply Branching and Phototrophic Bacteria 2001, Vol. 1. Springer, New York. Second ed.
10. Cirne D., Paloumet X., Björnsson L., Alve M., Mattiasson B. Anaerobic digestion of lipid-rich waste - effects of lipid concentration. Renew. Energy 2007, 32:965-975.
11. Daims H., Bruhl A., Amann R., Schleifer K.H., Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 1999, 22:434-444.
12. Daims H., Stoecker K., Wagner M. Fluorescence in situ hybridisation for the detection of prokaryotes. Advanced Methods in Molecular Microbial Ecology 2005, 213-239. Abingdon, United Kingdom, Bios-Garland. A.M. Osborn, C.J. Smith (Eds.).
13. de Bok F.A.M., van Leerdam R.C., Lomans B.P., Smidt H., Lens P.N.L., Janssen A.J.H., Stams A.J.M. Degradation of methanethiol by methylotrophic methanogenic archaea in a lab-scale upflow anaerobic sludge blanket reactor. Appl. Environ. Microbiol. 2006, 72:7540-7547.
14. Denhardt D.T. A membran-filter technique for the detection of complementary DNA. Biochem. Biophys. Res. Commun. 1966, 23:641-646.
15. Fukuzaki S., Nishio N., Nagai S. High rate performance and characterization of granular methanogenic sludges in upflow anaerobic sludge blanket reactors fed with various defined substrates. J. Ferment. Bioeng. 1995, 79:354-359.
16. Kundu K., Sharma S., Sreekrishnan T. Effect of operating temperatures on the microbial community profiles in a high cell density hybrid anaerobic bioreactor. Bioresour. Technol. 2012, 118:502-511.
17. Kundu K., Sharma S., Sreekrishnan T. Changes in microbial communities in a hybrid anaerobic reactor with organic loading rate and temperature. Bioresour. Technol. 2013, 129:538-547.
18. Lalman J., Bagley D.M. Effects of C18 long chain fatty acids on glucose, butyrate and hydrogen degradation. Water Res. 2002, 36:3307-3313.
19. McHugh S., Carton M., Mahony T., O'Flaherty V. Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol. Lett. 2006, 219:297-304.
20. Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
21. Nachaiyasit S., Stuckey D.C. The effect of shock loads on the performance of an anaerobic baffled reactor (ABR). 2. Step and transient hydraulic shocks at constant feed strength. Water Res. 1997, 31:2747-2754.
22. Nettmann E., Bergmann I., Mundt K., Linke B., Klocke M. Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA and mcrA analysis. J. Appl. Microbiol. 2008, 105:1835-1850.
23. Nettmann E., Bergmann I., Pramschufer S., Mundt K., Plogsties V., Herrmann C., Klocke M. Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants. Appl. Environ. Microbiol. 2010, 76:2540-2548.
24. Pernthaler A., Pernthaler J., Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 2002, 68:3094-3101.
25. Saravanan V., Sreekrishnan T.R. A mathematical model for a hybrid anaerobic reactor. J. Environ. Manag. 2008, 88:136-146.
26. Sousa D.Z., Pereira M.A., Smidt H., Stams A.J.M., Alves M.M. Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors. FEMS Microbiol. Ecol. 2007, 60:252-265.
27. Stahl D.A., Amann R. Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics 1991, 205-248. John Wiley & Sons, Chichester, England. E. Stackebrandt, M. Goodfellow (Eds.).
28. Thiele J.H., Chartrain M., Zeikus J.G. Control of interspecies electron flow during anaerobic digestion: role of floc formation in syntrophic methanogenesis. Appl. Environ. Microbiol. 1988, 54:10-19.
29. Vidal G., Carvalho A., Mendez R., Lema J. Influence of the content in fats and proteins on the anaerobic biodegradability of dairy wastewaters. Bioresour. Technol. 2000, 74:231-239.
30. Weng C., Jeris J.S. Biochemical mechanisms in the methane fermentation of glutamic and oleic acids. Water Res. 1976, 10:9-18.
31. Yang G., Anderson G. Effects of wastewater composition on stability of UASB. J. Environ. Eng. 1993, 119:958-977.
32. Yu Y., Lee C., Kim J., Hwang S. Group-specific primer and probe sets to detect methanogenic communities using quantitative real-time polymerase chain reaction. Biotechnol. Bioeng. 2005, 89:670-679.