Bulked segregant analysis identifies molecular markers associated with early bulking in cassava (Manihot esculenta Crantz)

Euphytica

Volumn 195, Issue 2, 2014, Pages 235-244

  Olasanmi, B ^a,b,c   Akoroda, M O ^a   Okogbenin, E ^c   Egesi, C ^c   Kahya, S S ^c   Onyegbule, O ^c   Ewa, F ^c   Guitierrez, J ^b   Ceballos, H ^b   Tohme, J ^b   Fregene, M ^b,d  

^a UNIVERSITY OF IBADAN   (Nigeria)

^b INTERNATIONAL CENTER FOR TROPICAL AGRICULTURE CIAT   (Colombia)

^c National Root Crops Research Institute Umudike   (Nigeria)

^d DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

Author keywords

Fresh root yield; Hybrid populations; Late bulking; Quantitative trait loci; Simple sequence repeat markers

Indexed keywords

MANIHOT ESCULENTA;

EID: 84888826039     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-013-0991-2     Document Type: Article

References (24)

1. Akinbo OA (2008) Introgression of high protein and pest resistance genes from inter-specific hybrids of Manihot esculenta ssp flabellifolia into cassava (Manihot esculenta Crantz). Thesis, Plant Science, Natural and Agricultural Sciences, University of the Free State, Bloemfontein, p 263.
2. Bainbridge Z, Wellings K, Westby A (1997) Village level cassava processing: distance learning package (field guide). Natural Resources Institute, Chatman.
3. Brauer MJ, Christianson CM, Pai DA, Dunham MJ (2006) Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae. Genetics 173(3): 1813-1816.
4. Collard BCY, Jahufer MZZ, Brouwer JB, Pang ECK (2005) An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: the basic concepts. Euphytica 142(1-2): 169-196.
5. Dellaporta SL, Wood J, Hicks JR (1983) A plant DNA minipreparation: version II. Plant Mol Biol Rep 1: 19-21.
6. Deutschbauer AM, Davis RW (2005) Quantitative trait loci mapped to single- nucleotide resolution in yeast. Nat Genet 37: 1333-1340.
7. Dixon AGO, Okechukwu RU, Akoroda MO, Ilona P, Ogbe F, Egesi CN, Kulakow P, Ssemakula G, Maziya-Dixon B, Iluebbey P, Yomeni MO, Geteloma C, James B, Eke-Okoro ON, Sanni L, Ntawuruhunga P, Tarawali G, Mahungu N, Lemchi J, Ezedinma CI, Okoro E, Kanju E, Adeniji AA, Nwosu K (2010) Improved cassava variety handbook. IITA Integrated Cassava Project, Ibadan, p 129.
8. FAO (Food and Agriculture Organization of the United Nations) (2008) www. fao. org. Investing in cassava research and development could boost yields and industrial uses. http://www. ugent. be/we/genetics/ipbo/en/research/cassava. htm. Accessed 7 Jul 2013.
9. FAO (2010) www. fao. org. Accessed 21 Feb 2012.
10. FAOSTAT (Food and Agriculture Organization of the United Nations) (2005) Statistical database of the Food and Agricultural Organisation of the United Nations. FAO, Rome. http://faostat. fao. org. Accessed 2 Apr 2007.
11. FAOSTAT (2008) Statistical database of the Food and Agricultural Organisation of the United Nations. FAO, Rome from http://faostat. fao. org. Accessed 26 Jan 2011.
12. FAOSTAT (2010) www. faostat. fao. org. Accessed 21 Feb 2012.
13. Gomez SM, Narayana M, Schubert AM, Ayers JL, Baring MR, Burow MD (2009) Identification of QTLs for pod and kernel traits in cultivated peanut by bulked segregant analysis. Electron J Biotechnol 12. 2: 10 p. https://en. wikipedia. org/wiki/Marker-assisted_selection. Accessed 7 Jul 2013.
14. Huang J, Bachem C, Jacobsen E, Visser RGF (2001) Molecular analysis of differentially expressed genes during post-harvest deterioration in cassava (Manihotesculenta Crantz) tuberous root. Euphytica 120: 85-93.
15. Lin HX, Qian HR, Zhuang JY, Lu J, Min SK, Xiong ZM, Huang N, Zheng KL (1996) RFLP mapping of QTL for yield and related characters in rice (Oryza sativa L.). Theor Appl Genet 92: 920-927.
16. Mace ES, Phong DT, Upadhyaya HD, Chandra S, Crouch JH (2006) SSR analysis of cultivated groundnut (Arachis hypogaea L.) germplasm resistant to rust and late leaf spot diseases. Euphytica 152(3): 317-330.
17. 2 and backcross generations for bulked segregant analysis using dominant markers. Crop Sci 40: 626-630.
18. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease- resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Natl Acad Sci USA 88: 9828-9832.
19. Nweke FI, Dixon AGO, Asiedu R, Folayan SA (1994) Cassava variety needs of farmers and potential for production growth in Africa. Collaborative study of cassava in Africa (COSCA). Working paper 10: 40-41.
20. Okogbenin E (2004). Quantitative trait loci mapping of root quality traits, morphological characters, and early bulking in cassava (Manihot esculenta Crantz). Thesis, Agronomy, Agriculture and Forestry, University of Ibadan, Ibadan p 220.
21. Okogbenin E, Marin J, Fregene M (2006) An SSR-based molecular genetic map of cassava. Euphytica 147(3): 433-440.
22. Olasanmi B (2010) Marker-assisted selection (MAS) for improvement of traits associated with high and early root productivity in cassava (Manihot esculenta Crantz). Thesis, Agronomy, Agriculture and Forestry, University of Ibadan, Ibadan p 168.
23. Sarma JS, Kunchai D (1989) Trends and prospects for cassava in the third World. Summary proceedings of a workshop on trends and prospects of cassava in the Third World. IFPRI, Washington DC pp 20-35.
24. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res 18: 6531-6535.