-
1
-
-
4143111922
-
The genome and beyond
-
ed. Egel R, . Springer, Heidelberg, Germany
-
Bähler J, Wood V. 2003. The genome and beyond. In The molecular biology of Schizosaccharomyces pombe: Genetics, genomics and beyond (ed. Egel R), pp. 13-26. Springer, Heidelberg, Germany.
-
(2003)
The Molecular Biology of Schizosaccharomyces Pombe: Genetics, Genomics and Beyond
, pp. 13-26
-
-
Bähler, J.1
Wood, V.2
-
2
-
-
0031818471
-
Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe
-
Bähler J, Wu J-Q, Longtine MS, Shah NG, McKenzie A III, Steever AB, Wach A, Philippsen P, Pringle JR. 1998. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe. Yeast 14: 943-951.
-
(1998)
Yeast
, vol.14
, pp. 943-951
-
-
Bähler, J.1
Wu, J.-Q.2
Longtine, M.S.3
Shah, N.G.4
McKenzie III, A.5
Steever, A.B.6
Wach, A.7
Philippsen, P.8
Pringle, J.R.9
-
3
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
4
-
-
0033858202
-
Patterns of variant polyadenylation signal usage in human genes
-
Beaudoing E, Freier S, Wyatt JR, Claverie J-M, Gautheret D. 2000 Patterns of variant polyadenylation signal usage in human genes. Genome Res 10: 1001-1010.
-
(2000)
Genome Res
, vol.10
, pp. 1001-1010
-
-
Beaudoing, E.1
Freier, S.2
Wyatt, J.R.3
Claverie, J.-M.4
Gautheret, D.5
-
5
-
-
0034812349
-
A rare polyadenylation signal mutation of the FOXP3 gene (AAUAAA->AAUGAA) leads to the IPEX syndrome
-
Bennett C, Brunkow M, Ramsdell F, O'Briant K, Zhu Q, Fuleihan R, Shigeoka A, Ochs H, Chance P. 2001. A rare polyadenylation signal mutation of the FOXP3 gene (AAUAAA->AAUGAA) leads to the IPEX syndrome. Immunogenetics 53: 435-439.
-
(2001)
Immunogenetics
, vol.53
, pp. 435-439
-
-
Bennett, C.1
Brunkow, M.2
Ramsdell, F.3
O'Briant, K.4
Zhu, Q.5
Fuleihan, R.6
Shigeoka, A.7
Ochs, H.8
Chance, P.9
-
6
-
-
84863610792
-
U1 snRNP determines mRNA length and regulates isoform expression
-
Berg MG, Singh Larry N, Younis I, Liu Q, Pinto Anna M, Kaida D, Zhang Z, Cho S, Sherrill-Mix S, Wan L, et al. 2012. U1 snRNP determines mRNA length and regulates isoform expression. Cell 150: 53-64.
-
(2012)
Cell
, vol.150
, pp. 53-64
-
-
Berg, M.G.1
Singh Larry, N.2
Younis, I.3
Liu, Q.4
Pinto Anna, M.5
Kaida, D.6
Zhang, Z.7
Cho, S.8
Sherrill-Mix, S.9
Wan, L.10
-
7
-
-
80055028381
-
The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover
-
Chen H-M, Futcher B, Leatherwood J. 2011. The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover. PLoS One 6: e26804.
-
(2011)
PLoS One
, vol.6
-
-
Chen, H.-M.1
Futcher, B.2
Leatherwood, J.3
-
8
-
-
78651102330
-
A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts
-
Cremona N, Potter K, Wise JA. 2011. A meiotic gene regulatory cascade driven by alternative fates for newly synthesized transcripts. Mol Biol Cell 22: 66-77.
-
(2011)
Mol Biol Cell
, vol.22
, pp. 66-77
-
-
Cremona, N.1
Potter, K.2
Wise, J.A.3
-
9
-
-
0023775399
-
Patterns of polyadenylation site selection in gene constructs containing multiple polyadenylation signals
-
Denome RM, Cole CN. 1988. Patterns of polyadenylation site selection in gene constructs containing multiple polyadenylation signals. Mol Cell Biol 8: 4829 -4839.
-
(1988)
Mol Cell Biol
, vol.8
, pp. 4829-4839
-
-
Denome, R.M.1
Cole, C.N.2
-
11
-
-
0037184518
-
The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria
-
Dreyfus M, Régnier P. 2002. The poly(A) tail of mRNAs: Bodyguard in eukaryotes, scavenger in bacteria. Cell 111: 611-613.
-
(2002)
Cell
, vol.111
, pp. 611-613
-
-
Dreyfus, M.1
Régnier, P.2
-
12
-
-
0034939628
-
Increased efficiency of mRNA 3′ end formation: A new genetic mechanism contributing to hereditary thrombophilia
-
Gehring NH, Frede U, Neu-Yilik G, Hundsdoerfer P, Vetter B, Hentze MW, Kulozik AE. 2001. Increased efficiency of mRNA 3′ end formation: A new genetic mechanism contributing to hereditary thrombophilia. Nat Genet 28: 389-392.
-
(2001)
Nat Genet
, vol.28
, pp. 389-392
-
-
Gehring, N.H.1
Frede, U.2
Neu-Yilik, G.3
Hundsdoerfer, P.4
Vetter, B.5
Hentze, M.W.6
Kulozik, A.E.7
-
13
-
-
0022726725
-
Generation of histone mRNA 3′ ends by endonucleolytic cleavage of the pre-mRNA in a snRNP-dependent in vitro reaction
-
Gick O, Krämer A, Keller W, Birnstiel ML. 1986. Generation of histone mRNA 3′ ends by endonucleolytic cleavage of the pre-mRNA in a snRNP-dependent in vitro reaction. EMBO J 5: 1319-1326.
-
(1986)
EMBO J
, vol.5
, pp. 1319-1326
-
-
Gick, O.1
Krämer, A.2
Keller, W.3
Birnstiel, M.L.4
-
14
-
-
0021773137
-
A sequence downstream of AAUAAA is required for rabbit â-globin mRNA 3? -end formation
-
Gil A, Proudfoot N. 1984. A sequence downstream of AAUAAA is required for rabbit â-globin mRNA 3? -end formation. Nature 312: 473-474.
-
(1984)
Nature
, vol.312
, pp. 473-474
-
-
Gil, A.1
Proudfoot, N.2
-
16
-
-
0037089139
-
Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′ -processing sites
-
Graber JH, McAllister GD, Smith TF. 2002. Probabilistic prediction of Saccharomyces cerevisiae mRNA 3′ -processing sites. Nucleic Acids Res 30: 1851-1858.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1851-1858
-
-
Graber, J.H.1
McAllister, G.D.2
Smith, T.F.3
-
17
-
-
40749094018
-
Cohesin complex promotes transcriptional termination between convergent genes in S. Pombe
-
Gullerova M, Proudfoot NJ. 2008. Cohesin complex promotes transcriptional termination between convergent genes in S. pombe. Cell 132: 983-995.
-
(2008)
Cell
, vol.132
, pp. 983-995
-
-
Gullerova, M.1
Proudfoot, N.J.2
-
18
-
-
79952592361
-
Autoregulation of convergent RNAi genes in fission yeast
-
Gullerova M, Moazed D, Proudfoot NJ. 2011. Autoregulation of convergent RNAi genes in fission yeast. Genes Dev 25: 556-568.
-
(2011)
Genes Dev
, vol.25
, pp. 556-568
-
-
Gullerova, M.1
Moazed, D.2
Proudfoot, N.J.3
-
19
-
-
0028246340
-
RNA 3′ end signals of the S. Pombe ura4 gene comprise a site determining and efficiency element
-
Humphrey T, Birse C, Proudfoot N. 1994. RNA 3′ end signals of the S. pombe ura4 gene comprise a site determining and efficiency element. EMBO J 13: 1441-1451.
-
(1994)
EMBO J
, vol.13
, pp. 1441-1451
-
-
Humphrey, T.1
Birse, C.2
Proudfoot, N.3
-
20
-
-
78649847070
-
U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
-
Kaida D, Berg MG, Younis I, Kasim M, Singh LN, Wan L, Dreyfuss G. 2010 U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation. Nature 468: 664-668.
-
(2010)
Nature
, vol.468
, pp. 664-668
-
-
Kaida, D.1
Berg, M.G.2
Younis, I.3
Kasim, M.4
Singh, L.N.5
Wan, L.6
Dreyfuss, G.7
-
23
-
-
0242292336
-
Sequence determinants in human polyadenylation site selection
-
Legendre M, Gautheret D. 2003. Sequence determinants in human polyadenylation site selection. BMC Genomics 4: 7.
-
(2003)
BMC Genomics
, vol.4
, pp. 7
-
-
Legendre, M.1
Gautheret, D.2
-
24
-
-
0346094457
-
Prediction of mammalian microRNA targets
-
Lewis BP, Shih Ih, Jones-Rhoades MW, Bartel DP, Burge CB. 2003. Prediction of mammalian microRNA targets. Cell 115: 787-798.
-
(2003)
Cell
, vol.115
, pp. 787-798
-
-
Lewis, B.P.1
Shih, I.H.2
Jones-Rhoades, M.W.3
Bartel, D.P.4
Burge, C.B.5
-
25
-
-
27244444905
-
Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures
-
Loke JC, Stahlberg EA, Strenski DG, Haas BJ, Wood PC, Li QQ. 2005. Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures. Plant Physiol 138: 1457-1468.
-
(2005)
Plant Physiol
, vol.138
, pp. 1457-1468
-
-
Loke, J.C.1
Stahlberg, E.A.2
Strenski, D.G.3
Haas, B.J.4
Wood, P.C.5
Li, Q.Q.6
-
26
-
-
77954847055
-
The landscape of C. Elegans 3′ UTRs
-
Mangone M, Manoharan A, Thierry-Mieg D, Thierry-Mieg J, Han T, Mackowiak S, Mis E, Zegar C, Gutwein M, Khivansara V, et al. The landscape of C. elegans 3′ UTRs. Science 329: 432-435.
-
Science
, vol.329
, pp. 432-435
-
-
Mangone, M.1
Manoharan, A.2
Thierry-Mieg, D.3
Thierry-Mieg, J.4
Han, T.5
Mackowiak, S.6
Mis, E.7
Zegar, C.8
Gutwein, M.9
Khivansara, V.10
-
27
-
-
84868028972
-
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
-
Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, Bähler J. 2012. Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 151: 671-683.
-
(2012)
Cell
, vol.151
, pp. 671-683
-
-
Marguerat, S.1
Schmidt, A.2
Codlin, S.3
Chen, W.4
Aebersold, R.5
Bähler, J.6
-
28
-
-
84883062782
-
Genome-wide mapping of polyadenylation sites in fission yeast reveals widespread alternative polyadenylation
-
Mata J. 2013. Genome-wide mapping of polyadenylation sites in fission yeast reveals widespread alternative polyadenylation. RNA Biol 10: 93-100.
-
(2013)
RNA Biol
, vol.10
, pp. 93-100
-
-
Mata, J.1
-
29
-
-
68749113985
-
Widespread shortening of 3′ UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
-
Mayr C, Bartel DP. 2009. Widespread shortening of 3′ UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138: 673 -684.
-
(2009)
Cell
, vol.138
, pp. 673-684
-
-
Mayr, C.1
Bartel, D.P.2
-
30
-
-
0022431870
-
The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3′ termini
-
McLauchlan J, Gaffney D, Whitton JL, Clements JB. 1985. The consensus sequence YGTGTTYY located downstream from the AATAAA signal is required for efficient formation of mRNA 3′ termini. Nucleic Acids Res 13: 1347-1368.
-
(1985)
Nucleic Acids Res
, vol.13
, pp. 1347-1368
-
-
McLauchlan, J.1
Gaffney, D.2
Whitton, J.L.3
Clements, J.B.4
-
31
-
-
78649910014
-
Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
-
Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM. 2010. Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell 143: 1018-1029.
-
(2010)
Cell
, vol.143
, pp. 1018-1029
-
-
Ozsolak, F.1
Kapranov, P.2
Foissac, S.3
Kim, S.W.4
Fishilevich, E.5
Monaghan, A.P.6
John, B.7
Milos, P.M.8
-
32
-
-
0024562757
-
How RNA polymerase II terminates transcription in higher eukaryotes
-
Proudfoot NJ. 1989. How RNA polymerase II terminates transcription in higher eukaryotes. Trends Biochem Sci 14: 105-110.
-
(1989)
Trends Biochem Sci
, vol.14
, pp. 105-110
-
-
Proudfoot, N.J.1
-
33
-
-
80052447253
-
Ending the message: Poly(A) signals then and now
-
Proudfoot NJ. 2011. Ending the message: Poly(A) signals then and now. Genes Dev 25: 1770-1782.
-
(2011)
Genes Dev
, vol.25
, pp. 1770-1782
-
-
Proudfoot, N.J.1
-
34
-
-
33749038931
-
Similarities and differences of polyadenylation signals in human and fly
-
Retelska D, Iseli C, Bucher P, Jongeneel CV, Naef F. 2006. Similarities and differences of polyadenylation signals in human and fly. BMC Genomics 7: 176.
-
(2006)
BMC Genomics
, vol.7
, pp. 176
-
-
Retelska, D.1
Iseli, C.2
Bucher, P.3
Jongeneel, C.V.4
Naef, F.5
-
35
-
-
66849122924
-
Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover
-
Rissland O, Norbury C. 2009. Decapping is preceded by 3′ uridylation in a novel pathway of bulk mRNA turnover. Nat Struct Mol Biol 16: 616-623.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 616-623
-
-
Rissland, O.1
Norbury, C.2
-
36
-
-
0028351948
-
The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′ -end formation in plants
-
Rothnie H, Reid J, Hohn T. 1994. The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′ -end formation in plants. EMBO J 13: 2200-2210.
-
(1994)
EMBO J
, vol.13
, pp. 2200-2210
-
-
Rothnie, H.1
Reid, J.2
Hohn, T.3
-
37
-
-
52949089292
-
The exosome: A multipurpose RNA-decay machine
-
Schmid M, Jensen TH. 2008. The exosome: A multipurpose RNA-decay machine. Trends Biochem Sci 33: 501-510.
-
(2008)
Trends Biochem Sci
, vol.33
, pp. 501-510
-
-
Schmid, M.1
Jensen, T.H.2
-
38
-
-
66249086197
-
Conserved features of cohesin binding along fission yeast chromosomes
-
Schmidt C, Brookes N, Uhlmann F. 2009. Conserved features of cohesin binding along fission yeast chromosomes. Genome Biol 10: R52.
-
(2009)
Genome Biol
, vol.10
-
-
Schmidt, C.1
Brookes, N.2
Uhlmann, F.3
-
39
-
-
44349130371
-
Genome level analysis of rice mRNA 3? -end processing signals and alternative polyadenylation
-
Shen Y, Ji G, Haas BJ, Wu X, Zheng J, Reese GJ, Li QQ. 2008a. Genome level analysis of rice mRNA 3? -end processing signals and alternative polyadenylation. Nucleic Acids Res 36: 3150-3161.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3150-3161
-
-
Shen, Y.1
Ji, G.2
Haas, B.J.3
Wu, X.4
Zheng, J.5
Reese, G.J.6
Li, Q.Q.7
-
40
-
-
52049086511
-
Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii
-
Shen Y, Liu Y, Liu L, Liang C, Li QQ. 2008b. Unique features of nuclear mRNA poly(A) signals and alternative polyadenylation in Chlamydomonas reinhardtii. Genetics 179: 167-176.
-
(2008)
Genetics
, vol.179
, pp. 167-176
-
-
Shen, Y.1
Liu, Y.2
Liu, L.3
Liang, C.4
Li, Q.Q.5
-
41
-
-
84864695758
-
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation
-
Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG. 2012. Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nat Struct Mol Biol 19: 845-852.
-
(2012)
Nat Struct Mol Biol
, vol.19
, pp. 845-852
-
-
Sherstnev, A.1
Duc, C.2
Cole, C.3
Zacharaki, V.4
Hornyik, C.5
Ozsolak, F.6
Milos, P.M.7
Barton, G.J.8
Simpson, G.G.9
-
42
-
-
0033866222
-
Emerging features of mRNA decay in bacteria
-
Steege DA. 2000. Emerging features of mRNA decay in bacteria. RNA 6: 1079-1090.
-
(2000)
RNA
, vol.6
, pp. 1079-1090
-
-
Steege, D.A.1
-
43
-
-
79958855346
-
In silico analysis of 3′ -end-processing signals in Aspergillus oryzae using expressed sequence tags and genomic sequencing data
-
Tanaka M, Sakai Y, Yamada O, Shintani T, Gomi K. 2011. In silico analysis of 3′ -end-processing signals in Aspergillus oryzae using expressed sequence tags and genomic sequencing data. DNA Res 18: 189-200.
-
(2011)
DNA Res
, vol.18
, pp. 189-200
-
-
Tanaka, M.1
Sakai, Y.2
Yamada, O.3
Shintani, T.4
Gomi, K.5
-
44
-
-
13744254695
-
A large-scale analysis of mRNA polyadenylation of human and mouse genes
-
Tian B, Hu J, Zhang H, Lutz CS. 2005. A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res 33: 201-212.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 201-212
-
-
Tian, B.1
Hu, J.2
Zhang, H.3
Lutz, C.S.4
-
45
-
-
22344439263
-
Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition
-
Venkataraman K, Brown KM, Gilmartin GM. 2005. Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. Genes Dev 19: 1315-1327.
-
(2005)
Genes Dev
, vol.19
, pp. 1315-1327
-
-
Venkataraman, K.1
Brown, K.M.2
Gilmartin, G.M.3
-
46
-
-
0035369052
-
Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual noncoding transcripts in Schizosaccharomyces pombe
-
Watanabe T, Miyashita K, Saito TT, Yoneki T, Kakihara Y, Nabeshima K, Kishi YA, Shimoda C, Nojima H. 2001. Comprehensive isolation of meiosis-specific genes identifies novel proteins and unusual noncoding transcripts in Schizosaccharomyces pombe. Nucleic Acids Res 29: 2327-2337.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2327-2337
-
-
Watanabe, T.1
Miyashita, K.2
Saito, T.T.3
Yoneki, T.4
Kakihara, Y.5
Nabeshima, K.6
Kishi, Y.A.7
Shimoda, C.8
Nojima, H.9
-
47
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm B, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett C, Rogers J, Bähler J. 2008. Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 453: 1239-1243.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.7
Rogers, J.8
Bähler, J.9
-
48
-
-
75149119376
-
An unexpected ending: Noncanonical 3′ end processing mechanisms
-
Wilusz JE, Spector DL. 2010. An unexpected ending: Noncanonical 3′ end processing mechanisms. RNA 16: 259-266.
-
(2010)
RNA
, vol.16
, pp. 259-266
-
-
Wilusz, J.E.1
Spector, D.L.2
-
49
-
-
0015883504
-
A poly(A) polymerase from calf thymus. Purification and properities of the enzyme
-
Winters M, Edmonds M. 1973a. A poly(A) polymerase from calf thymus. Purification and properities of the enzyme. J Biol Chem 248: 4756-4762.
-
(1973)
J Biol Chem
, vol.248
, pp. 4756-4762
-
-
Winters, M.1
Edmonds, M.2
-
50
-
-
0015881210
-
A poly(A) polymerase from calf thymus. Characterization of the reaction product and the primer requirement
-
Winters M, Edmonds MJ. 1973b. A poly(A) polymerase from calf thymus. Characterization of the reaction product and the primer requirement. J Biol Chem 248: 4763 -4768.
-
(1973)
J Biol Chem
, vol.248
, pp. 4763-4768
-
-
Winters, M.1
Edmonds, M.J.2
-
51
-
-
15544384891
-
Computational analysis of 3′ -ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat
-
Yan J, Marr TG. 2005. Computational analysis of 3′ -ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat. Genome Res 15: 369-375.
-
(2005)
Genome Res
, vol.15
, pp. 369-375
-
-
Yan, J.1
Marr, T.G.2
-
52
-
-
0033059981
-
Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis
-
Zhao J, Hyman L, Moore C. 1999. Formation of mRNA 3′ ends in eukaryotes: Mechanism, regulation, and interrelationships with other steps in mRNA synthesis. Microbiol Mol Biol Rev 63: 405-445.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 405-445
-
-
Zhao, J.1
Hyman, L.2
Moore, C.3
|