-
1
-
-
0034775280
-
Ammonia-oxidizing bacteria: a model for molecular microbial ecology
-
Kowalchuk GA, Stephen JR. 2001. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu. Rev. Microbiol. 55:485-529.
-
(2001)
Annu. Rev. Microbiol.
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
2
-
-
0024822090
-
Autotrophic nitrification in bacteria
-
Prosser JI. 1989. Autotrophic nitrification in bacteria. Adv. Microb. Physiol. 30:125-181.
-
(1989)
Adv. Microb. Physiol.
, vol.30
, pp. 125-181
-
-
Prosser, J.I.1
-
3
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA. 2005. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543-546.
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Könneke, M.1
Bernhard, A.E.2
de la Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
4
-
-
44249087866
-
Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora
-
Herrmann M, Saunders AM, Schramm A. 2008. Archaea dominate the ammonia-oxidizing community in the rhizosphere of the freshwater macrophyte Littorella uniflora. Appl. Environ. Microbiol. 74:3279-3283.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 3279-3283
-
-
Herrmann, M.1
Saunders, A.M.2
Schramm, A.3
-
5
-
-
41849095617
-
Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms
-
Tourna M, Freitag TE, Nicol GW, Prosser JI. 2008. Growth, activity and temperature responses of ammonia-oxidizing archaea and bacteria in soil microcosms. Environ. Microbiol. 10:1357-1364.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1357-1364
-
-
Tourna, M.1
Freitag, T.E.2
Nicol, G.W.3
Prosser, J.I.4
-
6
-
-
79956265889
-
Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms
-
Verhamme DT, Prosser JI, Nicol GW. 2011. Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms. ISME J. 5:1067-1071.
-
(2011)
ISME J.
, vol.5
, pp. 1067-1071
-
-
Verhamme, D.T.1
Prosser, J.I.2
Nicol, G.W.3
-
7
-
-
78651474568
-
Abundance of amoA genes of ammonia-oxidizing archaea and bacteria in activated sludge of full-scale wastewater treatment plants
-
Limpiyakorn T, Sonthiphand P, Rongsayamanont C, Polprasert C. 2011. Abundance of amoA genes of ammonia-oxidizing archaea and bacteria in activated sludge of full-scale wastewater treatment plants. Bioresour. Technol. 102:3694-3701.
-
(2011)
Bioresour. Technol.
, vol.102
, pp. 3694-3701
-
-
Limpiyakorn, T.1
Sonthiphand, P.2
Rongsayamanont, C.3
Polprasert, C.4
-
8
-
-
80051681887
-
Aquarium nitrification revisited: Thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium biofilters
-
doi:10.1371/journal.pone.0023281
-
Sauder LA, Engel K, Stearns JC, Masella AP, Pawliszyn R, Neufeld JD. 2011. Aquarium nitrification revisited: Thaumarchaeota are the dominant ammonia oxidizers in freshwater aquarium biofilters. PLoS One 6:e23281. doi:10.1371/journal.pone.0023281.
-
(2011)
PLoS One
, vol.6
-
-
Sauder, L.A.1
Engel, K.2
Stearns, J.C.3
Masella, A.P.4
Pawliszyn, R.5
Neufeld, J.D.6
-
9
-
-
84865711306
-
Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant
-
Sauder LA, Peterse F, Schouten S, Neufeld JD. 2012. Low-ammonia niche of ammonia-oxidizing archaea in rotating biological contactors of a municipal wastewater treatment plant. Environ. Microbiol. 14:2589-2600.
-
(2012)
Environ. Microbiol.
, vol.14
, pp. 2589-2600
-
-
Sauder, L.A.1
Peterse, F.2
Schouten, S.3
Neufeld, J.D.4
-
10
-
-
84865969236
-
Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils
-
He JZ, Hu HW, Zhang LM. 2012. Current insights into the autotrophic thaumarchaeal ammonia oxidation in acidic soils. Soil Biol. Biochem. 55:146-154.
-
(2012)
Soil Biol. Biochem.
, vol.55
, pp. 146-154
-
-
He, J.Z.1
Hu, H.W.2
Zhang, L.M.3
-
11
-
-
67649939034
-
Bacteria rather than archaea dominate microbial ammonia oxidation in an agricultural soil
-
Jia Z, Conrad R. 2009. Bacteria rather than archaea dominate microbial ammonia oxidation in an agricultural soil. Environ. Microbiol. 11:1658-1671.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 1658-1671
-
-
Jia, Z.1
Conrad, R.2
-
12
-
-
68149112220
-
Environmental factors shaping the ecological niches of ammoniaoxidizing archaea
-
Erguder TH, Boon N, Wittebolle L, Marzorati M, Verstraete W. 2009. Environmental factors shaping the ecological niches of ammoniaoxidizing archaea. FEMS Microbiol. Rev. 33:855-869.
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 855-869
-
-
Erguder, T.H.1
Boon, N.2
Wittebolle, L.3
Marzorati, M.4
Verstraete, W.5
-
13
-
-
84879821589
-
Spatial distribution and factors shaping the niche segregation of ammonia-oxidising microorganisms in Qiantang River, China
-
Liu S, Shen L, Lou L, Tian G, Zheng P, Hu B. 2013. Spatial distribution and factors shaping the niche segregation of ammonia-oxidising microorganisms in Qiantang River, China. Appl. Environ. Microbiol. 79:4065-4071.
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 4065-4071
-
-
Liu, S.1
Shen, L.2
Lou, L.3
Tian, G.4
Zheng, P.5
Hu, B.6
-
14
-
-
79953216030
-
Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammoniaoxidizing archaea in simulated creek ecosystems
-
Herrmann M, Scheibe A, Avrahami S, Küsel K. 2011. Ammonium availability affects the ratio of ammonia-oxidizing bacteria to ammoniaoxidizing archaea in simulated creek ecosystems. Appl. Environ. Microbiol. 77:1896-1899.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 1896-1899
-
-
Herrmann, M.1
Scheibe, A.2
Avrahami, S.3
Küsel, K.4
-
15
-
-
79251599617
-
Change in ammonia-oxidizing microorganisms in enriched nitrifying activated sludge
-
Sonthiphand P, Limpiyakorn T. 2011. Change in ammonia-oxidizing microorganisms in enriched nitrifying activated sludge. Appl. Microbiol. Biotechnol. 89:843-853.
-
(2011)
Appl. Microbiol. Biotechnol.
, vol.89
, pp. 843-853
-
-
Sonthiphand, P.1
Limpiyakorn, T.2
-
17
-
-
34249862426
-
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
-
Lam P, Jensen MM, Lavil G, McGinnis DF, Muller B, Schubert CJ, Amann R, Thamdrup B, Kuypers KKK. 2007. Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proc. Natl. Acad. Sci. U. S. A. 104:7104-7109.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 7104-7109
-
-
Lam, P.1
Jensen, M.M.2
Lavil, G.3
McGinnis, D.F.4
Muller, B.5
Schubert, C.J.6
Amann, R.7
Thamdrup, B.8
Kuypers, K.K.K.9
-
18
-
-
80052251699
-
Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater
-
Moore TA, Xing Y, Lazenby B, Lynch MD, SchiffS, Robertson WD, Timlin R, Lanza S, Ryan MC, Aravena R, Fortin D, Clark ID, Neufeld JD. 2011. Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater. Environ. Sci. Technol. 45:7217-7225.
-
(2011)
Environ. Sci. Technol.
, vol.45
, pp. 7217-7225
-
-
Moore, T.A.1
Xing, Y.2
Lazenby, B.3
Lynch, M.D.4
Schiff, S.5
Robertson, W.D.6
Timlin, R.7
Lanza, S.8
Ryan, M.C.9
Aravena, R.10
Fortin, D.11
Clark, I.D.12
Neufeld, J.D.13
-
19
-
-
33748328532
-
Anaerobic ammonium oxidation in the oxygen-deficient waters offnorthern Chile
-
Thamdrup B, Dalsgaard T, Jensen MM, Ulloa O, Farias L, Escribano R. 2006. Anaerobic ammonium oxidation in the oxygen-deficient waters offnorthern Chile. Limnol. Oceanogr. 51:2145-2156.
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 2145-2156
-
-
Thamdrup, B.1
Dalsgaard, T.2
Jensen, M.M.3
Ulloa, O.4
Farias, L.5
Escribano, R.6
-
20
-
-
34248190868
-
Anaerobic ammonium oxidation in the Peruvian oxygen minimum zone
-
Hamersley MR, Lavik G, Woebken D, Rattray JE, Lam P, Hopmans EC, Sinninghe Damsté JS, Krüger S, Graco M, Gutierrez D, Kuypers MMM. 2007. Anaerobic ammonium oxidation in the Peruvian oxygen minimum zone. Limnol. Oceanogr. 52:923-933.
-
(2007)
Limnol. Oceanogr.
, vol.52
, pp. 923-933
-
-
Hamersley, M.R.1
Lavik, G.2
Woebken, D.3
Rattray, J.E.4
Lam, P.5
Hopmans, E.C.6
Sinninghe Damsté, J.S.7
Krüger, S.8
Graco, M.9
Gutierrez, D.10
Kuypers, M.M.M.11
-
21
-
-
0031017550
-
Novel principles in the microbial conversion of nitrogen compounds
-
Jetten MSM, Logemann S, Muyzer G, Robertson LA, de Vries S, van Loosdrecht MCM, Kuenen JG. 1997. Novel principles in the microbial conversion of nitrogen compounds. Antonie Van Leeuwenhoek 71:75-93.
-
(1997)
Antonie Van Leeuwenhoek
, vol.71
, pp. 75-93
-
-
Jetten, M.S.M.1
Logemann, S.2
Muyzer, G.3
Robertson, L.A.4
De Vries, S.5
Van Loosdrecht, M.C.M.6
Kuenen, J.G.7
-
22
-
-
0030958373
-
Effects of aerobic and microaerobic conditions on anaerobic ammonium-oxidizing (anammox) sludge
-
Strous M, Van Gerven E, Kuenen JG, Jetten M. 1997. Effects of aerobic and microaerobic conditions on anaerobic ammonium-oxidizing (anammox) sludge. Appl. Environ. Microbiol. 63:2446-2448.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 2446-2448
-
-
Strous, M.1
Van Gerven, E.2
Kuenen, J.G.3
Jetten, M.4
-
23
-
-
79952900773
-
Diel cycling and stable isotopes of dissolved oxygen, dissolved inorganic carbon, and nitrogenous species in a stream receiving treated municipal sewage
-
Gammons CH, Babcock JN, Parker SR, Poulson SR. 2011. Diel cycling and stable isotopes of dissolved oxygen, dissolved inorganic carbon, and nitrogenous species in a stream receiving treated municipal sewage. Chem. Geol. 283:44-55.
-
(2011)
Chem. Geol.
, vol.283
, pp. 44-55
-
-
Gammons, C.H.1
Babcock, J.N.2
Parker, S.R.3
Poulson, S.R.4
-
24
-
-
78651405487
-
Coupled cycles of dissolved oxygen and nitrous oxide in rivers along a trophic gradient in Southern Ontario, Canada
-
Rosamond MS, Thuss SJ, SchiffSL, Elgood RJ. 2011. Coupled cycles of dissolved oxygen and nitrous oxide in rivers along a trophic gradient in Southern Ontario, Canada. J. Environ. Qual. 40:256-270.
-
(2011)
J. Environ. Qual.
, vol.40
, pp. 256-270
-
-
Rosamond, M.S.1
Thuss, S.J.2
Schiff, S.L.3
Elgood, R.J.4
-
25
-
-
33748305565
-
Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika)
-
Schubert CJ, Durisch-Kaiser E, Wehrli B, Lam P, Kuypers MMM. 2006. Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika). Environ. Microbiol. 8:1857-1863.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 1857-1863
-
-
Schubert, C.J.1
Durisch-Kaiser, E.2
Wehrli, B.3
Lam, P.4
Kuypers, M.M.M.5
-
26
-
-
34547684285
-
Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China)
-
Zhang Y, Ruan XH, Op den Camp HJM, Smits TJM, Jetten MSM, Schmid MC. 2007. Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China). Environ. Microbiol. 9:2375-2382.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 2375-2382
-
-
Zhang, Y.1
Ruan, X.H.2
Op Den Camp, H.J.M.3
Smits, T.J.M.4
Jetten, M.S.M.5
Schmid, M.C.6
-
27
-
-
80052492355
-
Distribution and diversity of anaerobic ammonia oxidation (anammox) bacteria in the sediment of eutrophic freshwater lake, Lake Kitaura, Japan
-
Yoshinaga I, Amano T, Yamagishi T, Okada K, Ueda S, Yuichi S. 2011. Distribution and diversity of anaerobic ammonia oxidation (anammox) bacteria in the sediment of eutrophic freshwater lake, Lake Kitaura, Japan. Microbes Environ. 26:189-197.
-
(2011)
Microbes Environ.
, vol.26
, pp. 189-197
-
-
Yoshinaga, I.1
Amano, T.2
Yamagishi, T.3
Okada, K.4
Ueda, S.5
Yuichi, S.6
-
28
-
-
63849329587
-
Revising the nitrogen cycle in the Peruvian oxygen minimum zone
-
Lam P, Lavik G, Jensen MM, van de Vossenberg J, Schmid M, Woebken D, Gutiérrez D, Amann R, Jetten MSM, Kuypers KKK. 2009. Revising the nitrogen cycle in the Peruvian oxygen minimum zone. Proc. Natl. Acad. Sci. U. S. A. 106:4752-4757.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 4752-4757
-
-
Lam, P.1
Lavik, G.2
Jensen, M.M.3
Van De Vossenberg, J.4
Schmid, M.5
Woebken, D.6
Gutiérrez, D.7
Amann, R.8
Jetten, M.S.M.9
Kuypers, K.K.K.10
-
29
-
-
84977075410
-
Water and wastewater monitoring report
-
Region of Waterloo, Region of Waterloo, Waterloo, Ontario, Canada
-
Region of Waterloo. 2012. Water and wastewater monitoring report. Region of Waterloo, Waterloo, Ontario, Canada. http://www.regionofwaterloo.ca/e n/aboutTheEnvironment/resources/2012_water_and_wastewater_monitori ng_report_1159602.pdf.
-
(2012)
-
-
-
30
-
-
34948835698
-
Stable-isotope probing implicates Methylophaga spp. and novel Gammaproteobacteria in marine methanol and methylamine metabolism
-
Neufeld JD, Schafer H, Cox MJ, Boden R, McDonald IR, Murrell JC. 2007. Stable-isotope probing implicates Methylophaga spp. and novel Gammaproteobacteria in marine methanol and methylamine metabolism. ISME J. 1:480-491.
-
(2007)
ISME J.
, vol.1
, pp. 480-491
-
-
Neufeld, J.D.1
Schafer, H.2
Cox, M.J.3
Boden, R.4
McDonald, I.R.5
Murrell, J.C.6
-
31
-
-
79955510254
-
Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil
-
Nicol GW, Prosser JI. 2011. Strategies to determine diversity, growth, and activity of ammonia-oxidizing archaea in soil. Methods Enzymol. 496:3-34.
-
(2011)
Methods Enzymol.
, vol.496
, pp. 3-34
-
-
Nicol, G.W.1
Prosser, J.I.2
-
32
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA
-
Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S ribosomal RNA. Appl. Environ. Microbiol. 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
33
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
34
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
35
-
-
84864364819
-
Growth of ammonia-oxidizing archaea and bacteria in cattle manure compost under various temperatures and ammonia concentrations
-
Oishi R, Tada C, Asano R, Yamamoto N, Suyama Y, Nakai Y. 2012. Growth of ammonia-oxidizing archaea and bacteria in cattle manure compost under various temperatures and ammonia concentrations. Microb. Ecol. 63:787-793.
-
(2012)
Microb. Ecol.
, vol.63
, pp. 787-793
-
-
Oishi, R.1
Tada, C.2
Asano, R.3
Yamamoto, N.4
Suyama, Y.5
Nakai, Y.6
-
36
-
-
79957684288
-
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
-
Tourna M, Stieglmeier M, Spang A, Könneke M, Schintlmeister A, Urich T, Engel M, Schloter M, Wagner M, Richter A, Schleper C. 2011. Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil. Proc. Natl. Acad. Sci. U. S. A. 108:8420-8425.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 8420-8425
-
-
Tourna, M.1
Stieglmeier, M.2
Spang, A.3
Könneke, M.4
Schintlmeister, A.5
Urich, T.6
Engel, M.7
Schloter, M.8
Wagner, M.9
Richter, A.10
Schleper, C.11
-
37
-
-
33847095451
-
Determination of ammonium using a microplate-based fluorometric technique
-
Poulin P, Pelletier E. 2007. Determination of ammonium using a microplate-based fluorometric technique. Talanta 71:1500-1506.
-
(2007)
Talanta
, vol.71
, pp. 1500-1506
-
-
Poulin, P.1
Pelletier, E.2
-
38
-
-
0035709008
-
A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite
-
Miranda KM, Espey MG, Wink DA. 2001. A rapid, simple spectrophotometric method for simultaneous detection of nitrate and nitrite. Nitric Oxide 5:62-71.
-
(2001)
Nitric Oxide
, vol.5
, pp. 62-71
-
-
Miranda, K.M.1
Espey, M.G.2
Wink, D.A.3
-
39
-
-
33846457920
-
Longitudinal changes in the bacterial community composition of the Danube River: a whole-river approach
-
Winter C, Hein T, Kavka G, Mach RL, Farnleitner AH. 2007. Longitudinal changes in the bacterial community composition of the Danube River: a whole-river approach. Appl. Environ. Microbiol. 73:421-431.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 421-431
-
-
Winter, C.1
Hein, T.2
Kavka, G.3
Mach, R.L.4
Farnleitner, A.H.5
-
40
-
-
0036795083
-
Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
-
Sekiguchi H, Watanabe M, Nakahara T, Xu B, Uchiyama H. 2002. Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl. Environ. Microbiol. 68:5142-5150.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5142-5150
-
-
Sekiguchi, H.1
Watanabe, M.2
Nakahara, T.3
Xu, B.4
Uchiyama, H.5
-
41
-
-
8744237221
-
Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine River: impact of Paris wastewater effluents
-
Cébron A, Coci M, Garnier J, Laanbroek HJ. 2004. Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine River: impact of Paris wastewater effluents. Appl. Environ. Microbiol. 70:6726-6737
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 6726-6737
-
-
Cébron, A.1
Coci, M.2
Garnier, J.3
Laanbroek, H.J.4
-
42
-
-
82255192064
-
Impact of water quality on bacterioplankton assemblage along Certima River Basin (central western Portugal) assessed by PCR-DGGE and multivariate analysis
-
de Figueiredo DR, Ferreira RV, Cerqueira M, de Melo TC, Pereira MJ, Castro BB, Correia A. 2012. Impact of water quality on bacterioplankton assemblage along Certima River Basin (central western Portugal) assessed by PCR-DGGE and multivariate analysis. Environ. Monit. Assess. 184: 471-485.
-
(2012)
Environ. Monit. Assess.
, vol.184
, pp. 471-485
-
-
de Figueiredo, D.R.1
Ferreira, R.V.2
Cerqueira, M.3
de Melo, T.C.4
Pereira, M.J.5
Castro, B.B.6
Correia, A.7
-
43
-
-
83555161554
-
Bacterial community composition in low-flowing river water with different sources of pollutants
-
Ibekwe AM, Leddy MB, Bold RM, Graves AK. 2012. Bacterial community composition in low-flowing river water with different sources of pollutants. FEMS Microbiol. Ecol. 79:155-166.
-
(2012)
FEMS Microbiol. Ecol.
, vol.79
, pp. 155-166
-
-
Ibekwe, A.M.1
Leddy, M.B.2
Bold, R.M.3
Graves, A.K.4
-
44
-
-
58149097139
-
Description of freshwater bacterial assemblages from the upper Parana River floodpulse system, Brazil
-
Lemke MJ, Lienau EK, Rothe J, Pagioro TA, Rosenfeld J, DeSalle R. 2009. Description of freshwater bacterial assemblages from the upper Parana River floodpulse system, Brazil. Microb. Ecol. 57:94-103.
-
(2009)
Microb. Ecol.
, vol.57
, pp. 94-103
-
-
Lemke, M.J.1
Lienau, E.K.2
Rothe, J.3
Pagioro, T.A.4
Rosenfeld, J.5
DeSalle, R.6
-
45
-
-
84860510778
-
Bacterial community profiles from sediments of the Anacostia River using metabolic and molecular analyses
-
Bushaw-Newton KL, Ewers EC, Velinsky DJ, Ashley JT, Macavoy SE. 2012. Bacterial community profiles from sediments of the Anacostia River using metabolic and molecular analyses. Environ. Sci. Pollut. Res. 19: 1271-1279.
-
(2012)
Environ. Sci. Pollut. Res.
, vol.19
, pp. 1271-1279
-
-
Bushaw-Newton, K.L.1
Ewers, E.C.2
Velinsky, D.J.3
Ashley, J.T.4
Macavoy, S.E.5
-
46
-
-
79952532923
-
Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments
-
Li M, Cao H, Hong Y, Gu JD. 2010. Spatial distribution and abundances of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in mangrove sediments. Appl. Microbiol. Biotechnol. 89:1243-1254.
-
(2010)
Appl. Microbiol. Biotechnol.
, vol.89
, pp. 1243-1254
-
-
Li, M.1
Cao, H.2
Hong, Y.3
Gu, J.D.4
-
47
-
-
41149153310
-
A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring
-
Hatzenpichler R, Lebecleva EV, Spieck E, Stoecker K, Richter A, Daims H, Wagner M. 2008. A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc. Natl. Acad. Sci. U. S. A. 105:2134-2139.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 2134-2139
-
-
Hatzenpichler, R.1
Lebecleva, E.V.2
Spieck, E.3
Stoecker, K.4
Richter, A.5
Daims, H.6
Wagner, M.7
-
48
-
-
70350052417
-
Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria
-
Martens-Habbena W, Berube PM, Urakawa H, de la Torre JR, Stahl DA. 2009. Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria. Nature 461:976-979.
-
(2009)
Nature
, vol.461
, pp. 976-979
-
-
Martens-Habbena, W.1
Berube, P.M.2
Urakawa, H.3
de la Torre, J.R.4
Stahl, D.A.5
-
49
-
-
78650963490
-
Stable isotope probing with 18O-water to investigate growth and mortality of ammonia oxidizing bacteria and archaea in soil
-
Adair K, Schwartz E. 2011. Stable isotope probing with 18O-water to investigate growth and mortality of ammonia oxidizing bacteria and archaea in soil. Methods Enzymol. 486:155-169.
-
(2011)
Methods Enzymol.
, vol.486
, pp. 155-169
-
-
Adair, K.1
Schwartz, E.2
-
50
-
-
34547201959
-
Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system
-
Woebken D, Fuchs BM, Kuypers MMM, Amann R. 2007. Potential interactions of particle-associated anammox bacteria with bacterial and archaeal partners in the Namibian upwelling system. Appl. Environ. Microbiol. 73:4648-4657.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 4648-4657
-
-
Woebken, D.1
Fuchs, B.M.2
Kuypers, M.M.M.3
Amann, R.4
-
51
-
-
81855194039
-
Anaerobic ammonia oxidation in a fertilized paddy soil
-
Zhu G, Wang S, Wang Y, Wang C, Risgaard-Petersen N, Jetten MSM, Yin C. 2011. Anaerobic ammonia oxidation in a fertilized paddy soil. ISME J. 5:1905-1912.
-
(2011)
ISME J.
, vol.5
, pp. 1905-1912
-
-
Zhu, G.1
Wang, S.2
Wang, Y.3
Wang, C.4
Risgaard-Petersen, N.5
Jetten, M.S.M.6
Yin, C.7
-
52
-
-
82355163532
-
Anammox bacterial abundance, biodiversity and activity in a constructed wetland
-
Zhu G, Wang S, Feng X, Fan G, Jetten MSM, Yin C. 2011. Anammox bacterial abundance, biodiversity and activity in a constructed wetland. Environ. Sci. Technol. 45:9951-9958.
-
(2011)
Environ. Sci. Technol.
, vol.45
, pp. 9951-9958
-
-
Zhu, G.1
Wang, S.2
Feng, X.3
Fan, G.4
Jetten, M.S.M.5
Yin, C.6
-
53
-
-
23744484512
-
Correlation between anammox activity and microscale distribution of nitrite in a subtropical mangrove sediment
-
Meyer RL, Rigaard-Petersen N, Allen DE. 2005. Correlation between anammox activity and microscale distribution of nitrite in a subtropical mangrove sediment. Appl. Environ. Microbiol. 71:6142-6149.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6142-6149
-
-
Meyer, R.L.1
Rigaard-Petersen, N.2
Allen, D.E.3
-
54
-
-
84879414451
-
Colonization of freshwater biofilms by nitrifying bacteria from activated sludge
-
Mußmann M, Ribot M, von Schiller D, Merbt SN, Augspurger C, Karwautz C, Winkel M, Battin TJ, Martí E, Daims H. 2013. Colonization of freshwater biofilms by nitrifying bacteria from activated sludge. FEMS Microbiol. Ecol. 85:104-115.
-
(2013)
FEMS Microbiol. Ecol.
, vol.85
, pp. 104-115
-
-
Mußmann, M.1
Ribot, M.2
von Schiller, D.3
Merbt, S.N.4
Augspurger, C.5
Karwautz, C.6
Winkel, M.7
Battin, T.J.8
Martí, E.9
Daims, H.10
-
55
-
-
84863116517
-
Lower abundance of ammoniaoxidizing archaea than ammonia-oxidizing bacteria detected in the subsurface sediments of the Northern South China Sea
-
Cao H, Hong Y, Li M, Gu JD. 2012. Lower abundance of ammoniaoxidizing archaea than ammonia-oxidizing bacteria detected in the subsurface sediments of the Northern South China Sea. Geomicrobiol. J. 29: 332-339.
-
(2012)
Geomicrobiol. J.
, vol.29
, pp. 332-339
-
-
Cao, H.1
Hong, Y.2
Li, M.3
Gu, J.D.4
-
56
-
-
33745121530
-
Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR
-
Schippers A, Neretin LN. 2006. Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ. Microbiol. 8:1251-1260.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 1251-1260
-
-
Schippers, A.1
Neretin, L.N.2
-
57
-
-
84863305677
-
Natural attenuation of septic system nitrogen by anammox
-
Robertson WD, Moore TA, Spoelstra J, Li L, Elgood R, Clark ID, SchiffSL, Aravena R, Neufeld JD. 2011. Natural attenuation of septic system nitrogen by anammox. Groundwater 50:541-553.
-
(2011)
Groundwater
, vol.50
, pp. 541-553
-
-
Robertson, W.D.1
Moore, T.A.2
Spoelstra, J.3
Li, L.4
Elgood, R.5
Clark, I.D.6
Schiff, S.L.7
Aravena, R.8
Neufeld, J.D.9
-
59
-
-
0034868585
-
Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species
-
Koops HP, Pommerening-Röser A. 2001. Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species. FEMS Microbiol. Ecol. 37:1-9.
-
(2001)
FEMS Microbiol. Ecol.
, vol.37
, pp. 1-9
-
-
Koops, H.P.1
Pommerening-Röser, A.2
-
60
-
-
82955205941
-
Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation
-
Avrahami S, Jia Z, Neufeld JD, Murrell JC, Conrad R, Kusel K. 2011. Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation. Appl. Environ. Microbiol. 77:7329-7338.
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7329-7338
-
-
Avrahami, S.1
Jia, Z.2
Neufeld, J.D.3
Murrell, J.C.4
Conrad, R.5
Kusel, K.6
-
61
-
-
40949111460
-
A hotspot for cold crenarchaeota in the neuston of high mountain lakes
-
Auguet JC, Casamayor EO. 2008. A hotspot for cold crenarchaeota in the neuston of high mountain lakes. Environ. Microbiol. 10:1080-1086.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 1080-1086
-
-
Auguet, J.C.1
Casamayor, E.O.2
-
62
-
-
33750053594
-
Remarkably diverse and contrasting archaeal communities in a large arctic river and the coastal Arctic Ocean
-
Galand PE, Lovejoy C, Vincent WF. 2006. Remarkably diverse and contrasting archaeal communities in a large arctic river and the coastal Arctic Ocean. Aquat. Microb. Ecol. 44:115-126.
-
(2006)
Aquat. Microb. Ecol.
, vol.44
, pp. 115-126
-
-
Galand, P.E.1
Lovejoy, C.2
Vincent, W.F.3
-
63
-
-
76349125984
-
Global ecological patterns in uncultured archaea
-
Auguet JC, Barberan A, Casamayor EO. 2010. Global ecological patterns in uncultured archaea. ISME J. 4:182-190.
-
(2010)
ISME J.
, vol.4
, pp. 182-190
-
-
Auguet, J.C.1
Barberan, A.2
Casamayor, E.O.3
-
64
-
-
84874706783
-
Evaluating primers for profiling anaerobic ammonia oxidizing bacteria within freshwater environments
-
doi:10.1371/journal.pone.0057242
-
Sonthiphand P, Neufeld JD. 2013. Evaluating primers for profiling anaerobic ammonia oxidizing bacteria within freshwater environments. PLoS One 8:e57242. doi:10.1371/journal.pone.0057242.
-
(2013)
PLoS One
, vol.8
-
-
Sonthiphand, P.1
Neufeld, J.D.2
|