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Volumn 29, Issue 23, 2013, Pages 2995-3002

Assessing gene-level translational control from ribosome profiling

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; TARGET OF RAPAMYCIN KINASE; CODON;

EID: 84888198198     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt533     Document Type: Article
Times cited : (66)

References (21)
  • 1
    • 84862778053 scopus 로고    scopus 로고
    • Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish
    • Bazzini, A.A. et al. (2012) Ribosome profiling shows that miR-430 reduces translation before causing mRNA decay in zebrafish. Science, 336, 233-237.
    • (2012) Science , vol.336 , pp. 233-237
    • Bazzini, A.A.1
  • 2
    • 0000561875 scopus 로고
    • An additive method for combining probability values from independent experiments
    • Edgington, E.S. (1972) An additive method for combining probability values from independent experiments. J. Psychol., 80, 351-363.
    • (1972) J. Psychol. , vol.80 , pp. 351-363
    • Edgington, E.S.1
  • 3
    • 77955644289 scopus 로고    scopus 로고
    • Mammalian microRNAs predominantly act to decrease target mRNA levels
    • Guo, H. et al. (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature, 466, 835-840.
    • (2010) Nature , vol.466 , pp. 835-840
    • Guo, H.1
  • 4
    • 0348063725 scopus 로고
    • The distribution of means for samples of size n drawn from a population in which the variate takes values between 0 and 1, all such values being equally probable
    • Hall, P. (1927) The distribution of means for samples of size n drawn from a population in which the variate takes values between 0 and 1, all such values being equally probable. Biometrika, 19, 240-245.
    • (1927) Biometrika , vol.19 , pp. 240-245
    • Hall, P.1
  • 5
    • 33748645500 scopus 로고    scopus 로고
    • GENCODE: Producing a reference annotation for ENCODE
    • Harrow, J. et al. (2006) GENCODE: producing a reference annotation for ENCODE. Genome Biol., 7(Suppl. 1), S4.1-S4.9.
    • (2006) Genome Biol. , vol.7 , Issue.SUPPL. 1
    • Harrow, J.1
  • 6
    • 84862777192 scopus 로고    scopus 로고
    • The translational landscape of mTOR signalling steers cancer initiation and metastasis
    • Hsieh, A.C. et al. (2012) The translational landscape of mTOR signalling steers cancer initiation and metastasis. Nature, 485, 55-61.
    • (2012) Nature , vol.485 , pp. 55-61
    • Hsieh, A.C.1
  • 7
    • 62549134121 scopus 로고    scopus 로고
    • Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling
    • Ingolia, N.T. et al. (2009) Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling. Science, 324, 218-223.
    • (2009) Science , vol.324 , pp. 218-223
    • Ingolia, N.T.1
  • 8
    • 81055155799 scopus 로고    scopus 로고
    • Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
    • Ingolia, N.T. et al. (2011) Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes. Cell, 147, 789-802.
    • (2011) Cell , vol.147 , pp. 789-802
    • Ingolia, N.T.1
  • 9
    • 0346802737 scopus 로고
    • On the frequency distribution of the means of samples from a population having any law of frequency with finite moments, with special reference to Pearson's Type II
    • Irwin, J.O. (1927) On the frequency distribution of the means of samples from a population having any law of frequency with finite moments, with special reference to Pearson's Type II. Biometrika, 19, 225-239.
    • (1927) Biometrika , vol.19 , pp. 225-239
    • Irwin, J.O.1
  • 10
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrowswheeler transform
    • Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with Burrowswheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 11
    • 68549104404 scopus 로고    scopus 로고
    • The sequence Alignment/Map format and SAMtools
    • Li, H. et al. (2009) The sequence Alignment/Map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 12
    • 34547178178 scopus 로고    scopus 로고
    • Reconstitution reveals the functional core of mammalian eIF3
    • Masutani, M. et al. (2007) Reconstitution reveals the functional core of mammalian eIF3. EMBO J., 26, 3373-3383.
    • (2007) EMBO J. , vol.26 , pp. 3373-3383
    • Masutani, M.1
  • 13
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • Robinson, M.D. and Oshlack, A. (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol., 11, R25.
    • (2010) Genome Biol. , vol.11
    • Robinson, M.D.1    Oshlack, A.2
  • 14
    • 41149085992 scopus 로고    scopus 로고
    • Small-sample estimation of negative binomial dispersion, with applications to SAGE data
    • Robinson, M.D. and Smyth, G.K. (2008) Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics, 9, 321-332.
    • (2008) Biostatistics , vol.9 , pp. 321-332
    • Robinson, M.D.1    Smyth, G.K.2
  • 15
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson, M.D. et al. (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics, 26, 139-140.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1
  • 16
    • 28544439977 scopus 로고    scopus 로고
    • Structural roles for human translation factor eIF3 in initiation of protein synthesis
    • Siridechadilok, B. et al. (2005) Structural roles for human translation factor eIF3 in initiation of protein synthesis. Science, 310, 1513-1515.
    • (2005) Science , vol.310 , pp. 1513-1515
    • Siridechadilok, B.1
  • 17
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3.
    • Smyth, G.K. (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol., 3. Article3.
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 18
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J.D. (2002) A direct approach to false discovery rates. J. R. Statist. Soc. B, 64, 479-498.
    • (2002) J. R. Statist. Soc. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 19
    • 84860527756 scopus 로고    scopus 로고
    • A unifying model for mTORC1-mediated regulation of mRNA translation
    • Thoreen, C.C. et al. (2012) A unifying model for mTORC1-mediated regulation of mRNA translation. Nature, 485, 109-113.
    • (2012) Nature , vol.485 , pp. 109-113
    • Thoreen, C.C.1
  • 20
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C. et al. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1
  • 21
    • 57449083256 scopus 로고    scopus 로고
    • Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3
    • Zhou, M. et al. (2008)Mass spectrometry reveals modularity and a complete subunit interaction map of the eukaryotic translation factor eIF3. Proc. Natl Acad. Sci. USA, 105, 18139-18144.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 18139-18144
    • Zhou, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.