The challenge of delineating biogeographical regions: Nestedness matters for Indo-Pacific coral reef fishes

Journal of Biogeography

Volumn 40, Issue 12, 2013, Pages 2228-2237

  Mouillot, David ^a,b   De Bortoli, Julien ^a   Leprieur, Fabien ^a   Parravicini, Valeriano ^c,d   Kulbicki, Michel ^d   Bellwood, David R ^b  

^a UNIVERSITÉ MONTPELLIER 2   (France)

^b JAMES COOK UNIVERSITY   (Australia)

^c Domain du Petit Arbois   (France)

^d LABORATOIRE ARAGO   (France)

Author keywords

diversity; Coral Triangle; Delineation; Dissimilarity; Indo Australian Archipelago; Nestedness; PAE; Partitioning; Reef fish assemblages; Turnover

Indexed keywords

ALGORITHM; BIODIVERSITY; BIOGEOGRAPHICAL REGION; CORAL REEF; NESTEDNESS; SPECIES RICHNESS; TELEOST;

INDIAN OCEAN; INDONESIA; LESSER SUNDA ISLANDS; PAPUA NEW GUINEA; PHILIPPINES; SOLOMON ISLANDS [(ISG) MELANESIA]; SUNDA ISLES; TIMOR; TIMOR-LESTE;

ANTHOZOA; CHAETODONTIDAE; LABRIDAE; PISCES; POMACENTRIDAE;

EID: 84888067965     PISSN: 03050270     EISSN: 13652699     Source Type: Journal    
DOI: 10.1111/jbi.12194     Document Type: Article

References (55)

1. Almeida-Neto, M., Frensel, D.M.B. & Ulrich, W. (2012) Rethinking the relationship between nestedness and beta diversity: a comment on Baselga (2010). Global Ecology and Biogeography, 21, 772-777.
2. Baselga, A. (2010) Partitioning the turnover and nestedness components of beta diversity. Global Ecology and Biogeography, 19, 134-143.
3. Baselga, A. (2012) The relationship between species replacement, dissimilarity derived from nestedness, and nestedness. Global Ecology and Biogeography, 21, 1223-1232.
4. Baselga, A., Jiménez-Valverde, A. & Niccolini, G. (2007) A multiple-site similarity measure independent of richness. Biology Letters, 3, 642-645.
5. Baselga, A., Gómez-Rodríguez, C. & Lobo, J.M. (2012) Historical legacies in world amphibian diversity revealed by the turnover and nestedness components of beta diversity. PLoS ONE, 7, e32341.
6. Bellwood, D.R. & Hughes, T.P. (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science, 292, 1532-1534.
7. Bellwood, D.R., Hughes, T.P., Connolly, S.R. & Tanner, J. (2005) Environmental and geometric constraints on Indo-Pacific coral reef biodiversity. Ecology Letters, 8, 643-651.
8. Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N. & van Herwerden, L. (2010) Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23, 335-349.
9. Bellwood, D.R., Renema, W. & Rosen, B.R. (2012) Biodiversity hotspots, evolution and coral reef biogeography: a review. Biotic evolution and environmental change in Southeast Asia (ed. by D.J. Gower, K.G. Johnson, J.E. Richardson, B.R. Rosen, L. Rüber and S.T. Williams ), pp. 216-245. Cambridge University Press, Cambridge.
10. Bowman, D., Brown, G.K., Braby, M.F., Brown, J.R., Cook, L.G., Crisp, M.D., Ford, F., Haberle, S., Hughes, J., Isagi, Y., Joseph, L., McBride, J., Nelson, G. & Ladiges, P.Y. (2010) Biogeography of the Australian monsoon tropics. Journal of Biogeography, 37, 201-216.
11. Buffon, G.L.L. (1761) Histoire naturelle generale. Imprimerie Royale, Paris.
12. Cabrero-Sañudo, F.J. & Lobo, J.M. (2009) Biogeography of Aphodiinae dung beetles based on the regional composition and distribution patterns of genera. Journal of Biogeography, 36, 1474-1492.
13. Cowman, P.F. & Bellwood, D.R. (2011) Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots. Journal of Evolutionary Biology, 24, 2543-2562.
14. Cowman, P.F. & Bellwood, D.R. (2013) The historical biogeography of coral reef fishes: global patterns of origination and dispersal. Journal of Biogeography, 40, 209-224.
15. Cowman, P.F., Bellwood, D.R. & van Herwerden, L. (2009) Dating the evolutionary origins of wrasse lineages (Labridae) and the rise of trophic novelty on coral reefs. Molecular Phylogenetics and Evolution, 52, 621-631.
16. Dobrovolski, R., Melo, A.S., Cassemiro, F.A.S. & Diniz-Filho, J.A.F. (2012) Climatic history and dispersal ability explain the relative importance of turnover and nestedness components of beta diversity. Global Ecology and Biogeography, 21, 191-197.
17. Dormann, C.F., McPherson, J.M., Araújo, M.B., Bivand, R., Bolliger, J., Carl, G., Davies, R.G., Hirzel, A., Jetz, W., Kissling, W.D., Kühn, I., Ohlemüller, R., Peres-Neto, P.R., Reineking, B., Schröder, B., Schurr, F.M. & Wilson, R. (2007) Methods to account for spatial autocorrelation in the analysis of species distributional data: a review. Ecography, 30, 609-628.
18. Echeverry, A. & Morrone, J.J. (2010) Parsimony analysis of endemicity as a panbiogeographical tool: an analysis of Caribbean plant taxa. Biological Journal of the Linnean Society, 101, 961-976.
19. Gaston, K.J., Davies, R.G., Orme, C.D.L., Olson, V.A., Thomas, G.H., Ding, T.S., Rasmussen, P.C., Lennon, J.J., Bennett, P.M., Owens, I.P.F. & Blackburn, T.M. (2007) Spatial turnover in the global avifauna. Proceedings of the Royal Society B: Biological Sciences, 274, 1567-1574.
20. Gotelli, N.J. (2009) Decomposing beta diversity. Frontiers of Biogeography, 1, 36-37.
21. Hortal, J., Diniz-Filho, J.A.F., Bini, L.M., Rodríguez, M.Á., Baselga, A., Nogués-Bravo, D., Rangel, T.F., Hawkins, B.A. & Lobo, J.M. (2011) Ice age climate, evolutionary constraints and diversity patterns of European dung beetles. Ecology Letters, 14, 741-748.
22. Hughes, T.P., Bellwood, D.R. & Connolly, S.R. (2002) Biodiversity hotspots, centres of endemicity, and the conservation of coral reefs. Ecology Letters, 5, 775-784.
23. Hutchins, J.B. (1994) A survey of the nearshore reef fish fauna of Western Australia's west and south coasts: the Leeuwin Province. Records of the Western Australian Museum, Supplement no. 46. Western Australian Museum, Perth.
24. Jetz, W. & Fine, P.V.A. (2012) Global gradients in vertebrate diversity predicted by historical area-productivity dynamics and contemporary environment. PLoS Biology, 10, e1001292.
25. Kaufman, L. & Rousseeuw, P.J. (1990) Finding groups in data: an introduction to cluster analysis. John Wiley & Sons Inc., New York.
26. Kent, M. (2006) Numerical classification and ordination methods in biogeography. Progress in Physical Geography, 30, 399-408.
27. Kissling, W.D. & Carl, G. (2008) Spatial autocorrelation and the selection of simultaneous autoregressive models. Global Ecology and Biogeography, 17, 59-71.
28. Koleff, P., Gaston, K.J. & Lennon, J.J. (2003) Measuring beta diversity for presence-absence data. Journal of Animal Ecology, 72, 367-382.
29. Kreft, H. & Jetz, W. (2010) A framework for delineating biogeographical regions based on species distributions. Journal of Biogeography, 37, 2029-2053.
30. La Sorte, F.A. & McKinney, M.L. (2006) Compositional similarity and the distribution of geographical range size for assemblages of native and non-native species in urban floras. Diversity and Distributions, 12, 679-686.
31. Legendre, P. & Legendre, L. (1998) Numerical ecology, 2nd edn. Elsevier, Amsterdam.
32. Leprieur, F., Tedesco, P.A., Hugueny, B., Beauchard, O., Durr, H.H., Brosse, S. & Oberdorff, T. (2011) Partitioning global patterns of freshwater fish beta diversity reveals contrasting signatures of past climate changes. Ecology Letters, 14, 325-334.
33. Leprieur, F., Albouy, C., De Bortoli, J., Cowman, P.F., Bellwood, D.R. & Mouillot, D. (2012) Quantifying phylogenetic beta diversity: distinguishing between 'true' turnover of lineages and phylogenetic diversity gradients. PLoS ONE, 7, e42760.
34. Lichstein, J.W. (2007) Multiple regression on distance matrices: a multivariate spatial analysis tool. Plant Ecology, 188, 117-131.
35. Lo Presti, R.M. & Oberprieler, C. (2009) Evolutionary history, biogeography and eco-climatological differentiation of the genus Anthemis L. (Compositae, Anthemideae) in the circum-Mediterranean area. Journal of Biogeography, 36, 1313-1332.
36. McKnight, M.W., White, P.S., McDonald, R.I., Lamoreux, J.F., Sechrest, W., Ridgely, R.S. & Stuart, S.N. (2007) Putting beta-diversity on the map: broad-scale congruence and coincidence in the extremes. PLoS Biology, 5, 2424-2432.
37. Meilã, M. (2007) Comparing clusterings-an information based distance. Journal of Multivariate Analysis, 98, 873-895.
38. Meng, K., Li, S. & Murphy, R.W. (2008) Biogeographical patterns of Chinese spiders (Arachnida: Araneae) based on a parsimony analysis of endemicity. Journal of Biogeography, 35, 1241-1249.
39. Morlon, H., Schwilk, D.W., Bryant, J.A., Marquet, P.A., Rebelo, A.G., Tauss, C., Bohannan, B.J.M. & Green, J.L. (2011) Spatial patterns of phylogenetic diversity. Ecology Letters, 14, 141-149.
40. Morrone, J.J. (1994) On the identification of areas of endemism. Systematic Biology, 43, 438-441.
41. Morrone, J.J. & Crisci, J.V. (1995) Historical biogeography: introduction to methods. Annual Review of Ecology and Systematics, 26, 373-401.
42. Nixon, K.C. (1999) The Parsimony Ratchet, a new method for rapid parsimony analysis. Cladistics - the International Journal of the Willi Hennig Society, 15, 407-414.
43. Olson, D.M., Dinerstein, E., Wikramanayake, E.D., Burgess, N.D., Powell, G.V.N., Underwood, E.C., D'Amico, J.A., Itoua, I., Strand, H.E., Morrison, J.C., Loucks, C.J., Allnutt, T.F., Ricketts, T.H., Kura, Y., Lamoreux, J.F., Wettengel, W.W., Hedao, P. & Kassem, K.R. (2001) Terrestrial ecoregions of the worlds: a new map of life on Earth. BioScience, 51, 933-938.
44. Pompa, S., Ehrlich, P.R. & Ceballos, G. (2011) Global distribution and conservation of marine mammals. Proceedings of the National Academy of Sciences USA, 108, 13, 600-13, 605.
45. R Development Core Team (2011) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. Available at: http://www.r-project.org.
46. Renema, W., Bellwood, D.R., Braga, J.C., Bromfield, K., Hall, R., Johnson, K.G., Lunt, P., Meyer, C.P., McMonagle, L.B., Morley, R.J., O'Dea, A., Todd, J.A., Wesselingh, F.P., Wilson, M.E.J. & Pandolfi, J.M. (2008) Hopping hotspots: global shifts in marine biodiversity. Science, 321, 654-657.
47. Rosen, B.R. (1988) From fossils to Earth history: applied historical biogeography. Analytical biogeography: an integrated approach to the study of animal and plant distributions (ed. by A.A. Myers and P.S. Giller ), pp. 437-481. Chapman & Hall, London.
48. Sclater, P.L. (1858) On the general geographical distribution of the members of the class Aves. Journal of the Proceedings of the Linnean Society: Zoology, 2, 130-145.
49. Svenning, J.C., Flojgaard, C. & Baselga, A. (2011) Climate, history and neutrality as drivers of mammal beta diversity in Europe: insights from multiscale deconstruction. Journal of Animal Ecology, 80, 393-402.
50. Ulrich, W. & Almeida-Neto, M. (2012) On the meanings of nestedness: back to the basics. Ecography, 35, 865-871.
51. Ulrich, W. & Gotelli, N.J. (2007) Null model analysis of species nestedness patterns. Ecology, 88, 1824-1831.
52. Whiting, A.S., Lawler, S.H., Horwitz, P. & Crandall, K.A. (2000) Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics. Animal Conservation, 3, 155-163.
53. Williams, P.H., de Klerk, H.M. & Crowe, T.M. (1999) Interpreting biogeographical boundaries among Afrotropical birds: spatial patterns in richness gradients and species replacement. Journal of Biogeography, 26, 459-474.
54. Wilson, M.E.J. & Rosen, B.R. (1998) Implications of paucity of corals in the Paleogene of SE Asia: plate tectonics or centre of origin? Backhuys Publishers, Leiden.
55. Wright, D.H. & Reeves, J.H. (1992) On the meaning and measurement of nestedness of species assemblages. Oecologia, 92, 416-428.