Genesis and genetic constellations of swine influenza viruses in Thailand

Veterinary Microbiology

Volumn 167, Issue 3-4, 2013, Pages 314-326

  Poonsuk, Sukontip ^a   Sangthong, Pradit ^a   Petcharat, Nantawan ^a   Lekcharoensuk, Porntippa ^a  

^a KASETSART UNIVERSITY   (Thailand)

Author keywords

Genetic characterization; SIV evolution; SIV lineages; Swine influenza virus

Indexed keywords

ANIMAL CELL; ARTICLE; EURASIAN SWINE VIRUS; GENE CLUSTER; GENE SEQUENCE; GENETIC ANALYSIS; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H1N2; INFLUENZA VIRUS A H3N2; NONHUMAN; NUCLEOTIDE SEQUENCE; PESTIVIRUS; PHYLOGENY; SEASONAL HUMAN VIRUS; SWINE INFLUENZA VIRUS; THAILAND; TRIPLE REASSORTANT VIRUS; VIRUS CHARACTERIZATION; VIRUS GENOME; VIRUS ISOLATION;

INFLUENZA A VIRUS; SIMIAN IMMUNODEFICIENCY VIRUS; SUIDAE; SWINE INFLUENZA VIRUS;

GENETIC CHARACTERIZATION; SIV EVOLUTION; SIV LINEAGES; SWINE INFLUENZA VIRUS;

ANIMALS; GENES, VIRAL; INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE INFECTIONS; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID; SWINE; SWINE DISEASES; THAILAND;

EID: 84888060371     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2013.09.007     Document Type: Article

References (35)

1. Bao Y., Bolotov P., Dernovoy D., Kiryutin B., Zaslavsky L., Tatusova T., Ostell J., Lipman D. The influenza virus resource at the National Center for Biotechnology Information. J. Virol. 2008, 82:596-601.
2. Brown I.H., Harris P.A., McCauley J.W., Alexander D.J. Multiple genetic reassortment of avian and human influenza A viruses in European pigs, resulting in the emergence of an H1N2 virus of novel genotype. J. Gen. Virol. 1998, 79:2947-2955.
3. Campitelli L., Donatelli I., Foni E., Castrucci M.R., Fabiani C., Kawaoka Y., Krauss S., Webster R.G. Continued evolution of H1N1 and H3N2 influenza viruses in pigs in Italy. Virology 1997, 232:310-318.
4. Chutinimitkul S., Thippamom N., Damrongwatanapokin S., Payungporn S., Thanawongnuwech R., Amonsin A., Boonsuk P., Sreta D., Bunpong N., Tantilertcharoen R., Chamnanpood P., Parchariyanon S., Theamboonlers A., Poovorawan Y. Genetic characterization of H1N1, H1N2 and H3N2 swine influenza virus in Thailand. Arch. Virol. 2008, 153:1049-1056.
5. Guan Y., Shortridge K.F., Krauss S., Li P.H., Kawaoka Y., Webster R.G. Emergence of avian H1N1 influenza viruses in pigs in China. J. Virol. 1996, 70:8041-8046.
6. Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146:2275-2289.
7. Howden K.J., Brockhoff E.J., Caya F.D., McLeod L.J., Lavoie M., Ing J.D., Bystrom J.M., Alexandersen S., Pasick J.M., Berhane Y., Morrison M.E., Keenliside J.M., Laurendeau S., Rohonczy E.B. An investigation into human pandemic influenza virus (H1N1) 2009 on an Alberta swine farm. Can. Vet. J. 2009, 50:1153-1161.
8. Ito T., Couceiro J.N., Kelm S., Baum L.G., Krauss S., Castrucci M.R., Donatelli I., Kida H., Paulson J.C., Webster R.G., Kawaoka Y. Molecular basis for the generation in pigs of influenza A viruses with pandemic potential. J. Virol. 1998, 72:7367-7373.
9. Jung K., Chae C. Phylogenetic analysis of an H1N2 influenza A virus isolated from a pig in Korea. Arch. Virol. 2004, 149:1415-1422.
10. Kitikoon P., Sreta D., Tuanudom R., Amonsin A., Suradhat S., Oraveerakul K., Poovorawan Y., Thanawongnuwech R. Serological evidence of pig-to-human influenza virus transmission on Thai swine farms. Vet. Microbiol. 2011, 148:413-418.
11. Komadina N., Roque V., Thawatsupha P., Rimando-Magalong J., Waicharoen S., Bomasang E., Sawanpanyalert P., Rivera M., Iannello P., Hurt A.C., Barr I.G. Genetic analysis of two influenza A (H1) swine viruses isolated from humans in Thailand and the Philippines. Virus Genes 2007, 35:161-165.
12. Lakdawala S.S., Lamirande E.W., Suguitan A.L., Wang W., Santos C.P., Vogel L., Matsuoka Y., Lindsley W.G., Jin H., Subbarao K. Eurasian-origin gene segments contribute to the transmissibility, aerosol release, and morphology of the 2009 pandemic H1N1 influenza virus. PLoS Pathogens 2011, 7:e1002443.
13. Lam T.T., Zhu H., Wang J., Smith D.K., Holmes E.C., Webster R.G., Webby R., Peiris J.M., Guan Y. Reassortment events among swine influenza A viruses in China: implications for the origin of the 2009 influenza pandemic. J. Virol. 2011, 85:10279-10285.
14. Lee C.S., Kang B.K., Kim H.K., Park S.J., Park B.K., Jung K., Song D.S. Phylogenetic analysis of swine influenza viruses recently isolated in Korea. Virus Genes 2008, 37:168-176.
15. Lekcharoensuk P., Nanakorn J., Wajjwalku W., Webby R., Chumsing W. First whole genome characterization of swine influenza virus subtype H3N2 in Thailand. Vet. Microbiol. 2010, 145:230-244.
16. Lowen A.C., Palese P. Transmission of influenza virus in temperate zones is predominantly by aerosol, in the tropics by contact: a hypothesis. PLoS Currents 2009, 17:RRN1002.
17. Marozin S., Gergory V., Cameron K.M., Valette M., Aymard M., Foni E., Barigazzi G., Lin Y., Hay A. Antigenic and genetic diversity among swine influenza A H1N1 and H1N2 viruses in Europe. J. Gen. Virol. 2002, 83:735-745.
18. Nakharuthai C., Boonsoongnern A., Poolperm P., Wajjwalku W., Urairong K., Chumsing W., Lertwitcharasarakul P., Lekcharoensuk P. Occurrence of swine influenza virus infection in swine with porcine respiratory disease complex. Southeast Asian J. Trop. Med. Public 2008, 39:1045-1053.
19. Nelson M.I., Vincent A.L., Kitikoon P., Holmes E.C., Gramer M.R. Evolution of novel reassortant A/H3N2 influenza viruses in North American swine and humans, 2009-2011. J. Virol. 2012, 86:8872-8878.
20. Ngo L.T., Hiromoto Y., Pham V.P., Le H.T., Nguyen H.T., Le V.T., Takemae N., Saito T. Isolation of novel triple-reassortant swine H3N2 influenza viruses possessing the hemagglutinin and neuraminidase genes of a seasonal influenza virus in Vietnam in 2010. Influenza Other Respir. Viruses 2012, 6:6-10.
21. Russell C.A., Jones T.C., Barr I.G., Cox N.J., Garten R.J., Gregory V., Gust I.D., Hampson A.W., Hay A.J., Hurt A.C., Jong J.C., Kelso A., Klimov A.I., Kageyama T., Komadina N., Lapedes A.S., Lin Y.P., Mosterin A., Obuchi M., Odagiri T., Osterhaus A.D., Rimmelzwaan G.F., Shaw M.W., Skepner E., Stohr K., Tashiro M., Fouchier R.A., Smith D.J. The global circulation of seasonal influenza A (H3N2) viruses. Science 2008, 320:340-346.
22. Scholtissek C., Burger H., Bachmann P.A., Hannoun C. Genetic relatedness of hemagglutinins of the H1 subtype of influenza A viruses isolated from swine and birds. Virology 1983, 129:521-523.
23. Shortridge K.F., Webster R.G., Butterfield W.K., Campbell C.H. Persistent of Hong Kong influenza virus variants in pigs. Science 1976, 196:1445-1455.
24. Simmerman J.M., Thawatsupha P., Kingnate D., Fukuda K., Chaising A., Dowell S.F. Influenza in Thailand: a case study for middle income countries. Vaccine 2004, 23:182-187.
25. Smith G.J., Bahl J., Vijaykrishna D., Zhang J., Poon L.L., Chen H., Webster R.G., Peiris J.S., Guan Y. Dating the emergence of pandemic influenza viruses. Proc. Natl. Acad. Sci. U. S. A. 2009, 106:11709-11712.
26. Smith G.J., Vijaykrishna D., Bahl J., Lycett S.J., Worobey M., Pybus O.G., Ma S.K., Cheung C.L., Raghwani J., Bhatt S., Peiris J.S., Guan Y., Rambaut A. Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature 2009, 459:1122-1125.
27. Sreta D., Tantawet S., Na Ayudhya S.N., Thontiravong A., Wongphatcharachai M., Lapkuntod J., Bunpapong N., Tuanudom R., Suradhat S., Vimolket L., Poovorawan Y., Thanawongnuwech R., Amonsin A., Kitikoon P. Pandemic (H1N1) 2009 virus on commercial swine farm, Thailand. Emerg. Infect. Dis. 2010, 16:1587-1590.
28. Takemae N., Parchariyanon S., Ruttanapumma R., Hiromoto Y., Hayashi T., Uchida Y., Saito T. Swine influenza virus infection in different age groups of pigs in farrow-to-finish farms in Thailand. Virol. J. 2011, 8:537.
29. Vijaykrishna D., Poon L.L.M., Zhu H.C., Ma S.K., Li O.T.W., Cheung C.L., Smith G.J.D., Peiris J.S.M., Guan Y. Reassortment of pandemic H1N1/2009 influenza A virus in swine. Science 2010, 328:1529.
30. Vijaykrishna D., Smith G.J., Pybus O.G., Zhu H., Bhatt S., Poon L.L., Riley S., Bahl J., Ma S.K., Cheung C.L., Perera R.A., Chen H., Shortridge K.F., Webby R.J., Webster R.G., Guan Y., Peiris J.S. Long-term evolution and transmission dynamics of swine influenza A virus. Nature 2011, 473:519-522.
31. Vincent A.L., Ma W., Lager K.M., Gramer M.R., Richt J.A., Janke B.H. Characterization of a newly emerged genetic cluster of H1N1 and H1N2 swine influenza virus in the United States. Virus Genes 2009, 39:176-185.
32. Vincent A.L., Ma W., Lager K.M., Janke B.H., Richt J.A. Swine influenza viruses a North American perspective. Adv. Virus Res. 2008, 72:127-154.
33. Webby R.J., Rossow K., Erickson G., Sims Y., Webster R. Multiple lineages of antigenically and genetically diverse influenza A virus co-circulate in the United States swine population. Virus Res. 2004, 103:67-73.
34. Webster R.G., Bean W.J., Gorman O.T., Chamber T.M., Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 1992, 56:152-179.
35. Zhou N.N., Senne D.A., Landgraf J.S., Swenson S.L., Erickson G., Rossow K., Liu L., Yoon K.J., Kraus S., Webster R.G. Genetic reassortment of avian, swine, and human influenza A viruses in American pigs. J. Virol. 1999, 73:8851-8856.