First insights into the entry process of hyperthermophilic archaeal viruses

Journal of Virology

Volumn 87, Issue 24, 2013, Pages 13379-13385

  Quemin, Emmanuelle R J ^a   Lucas, Soizick ^a   Daum, Bertram ^b   Quax, Tessa E F ^a   Kühlbrandt, Werner ^b   Forterre, Patrick ^a   Albers, Sonja Verena ^c   Prangishvili, David ^a   Krupovic, Mart ^a  

^a INSTITUT PASTEUR   (France)

^b MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

^c MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEAL VIRUS; ARTICLE; BINDING AFFINITY; CELL SURFACE; CONTROLLED STUDY; DNA VIRUS INFECTION; HYPERTHERMOPHILIC ARCHAEON; NONHUMAN; PRIORITY JOURNAL; RUDIVIRIDAE; SULFOLOBUS ISLANDICUS; SULFOLOBUS ISLANDICUS ROD SHAPED VIRUS 2; VIRION; VIRUS ATTACHMENT; VIRUS CELL INTERACTION; VIRUS ENTRY; VIRUS MORPHOLOGY; VIRUS PARTICLE; VIRUS PATHOGENESIS;

FIMBRIAE, BACTERIAL; RUDIVIRIDAE; SULFOLOBUS; VIRION; VIRUS ATTACHMENT; VIRUS INTERNALIZATION;

EID: 84888029489     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.02742-13     Document Type: Article

References (54)

1. Krupovic M, White MF, Forterre P, Prangishvili D. 2012. Postcards from the edge:structural genomics of archaeal viruses. Adv. Virus Res. 82:33-62.
2. Pina M, Bize A, Forterre P, Prangishvili D. 2011. The archeoviruses. FEMS Microbiol. Rev. 35:1035-1054.
3. Prangishvili D. 2013. The wonderful world of archaeal viruses. Annu. Rev. Microbiol. 67:565-585.
4. Krupovic M, Prangishvili D, Hendrix RW, Bamford DH. 2011. Genomics of bacterial and archaeal viruses:dynamics within the prokaryotic virosphere. Microbiol. Mol. Biol. Rev. 75:610-635.
5. Prangishvili D, Garrett RA, Koonin EV. 2006. Evolutionary genomics of archaeal viruses:unique viral genomes in the third domain of life. Virus Res. 117:52-67.
6. Poranen MM, Daugelavicius R, Bamford DH. 2002. Common principles in viral entry. Annu. Rev. Microbiol. 56:521-538.
7. Vinga I, São-José C, Tavares P, Santos MA. 2006. Bacteriophage entry in the host cell, p 163-203. In Wêgrzyn G (ed), Modern bacteriophage biology and biotechnology. Research Signpost, Kerala, India.
8. Daugelavičius R, Cvirkaitė V, Gaidelytė A, Bakienė E, Gabrėnaitė-Verkhovskaya R, Bamford DH. 2005. Penetration of enveloped doublestranded RNA bacteriophages phi13 and phi6 into Pseudomonas syringae cells. J. Virol. 79:5017-5026.
9. Inagaki M, Kawaura T, Wakashima H, Kato M, Nishikawa S, Kashimura N. 2003. Different contributions of the outer and inner R-core residues of lipopolysaccharide to the recognition by spike H and G proteins of bacteriophage phiX174. FEMS Microbiol. Lett. 226:221-227.
10. Molineux IJ. 2001. No syringes please, ejection of phage T7 DNA from the virion is enzyme driven. Mol. Microbiol. 40:1-8.
11. Bamford DH, Palva ET, Lounatmaa K. 1976. Ultrastructure and life cycle of the lipid-containing bacteriophage phi 6. J. Gen. Virol. 32:249-259.
12. Rakonjac J, Bennett NJ, Spagnuolo J, Gagic D, Russel M. 2011. Filamentous bacteriophage:biology, phage display and nanotechnology applications. Curr. Issues Mol. Biol. 13:51-76.
13. Shiba T, Miyake T. 1975. New type of infectious complex of E. coli RNA phage. Nature 254:157-158.
14. Yen JY, Broadway KM, Scharf BE. 2012. Minimum requirements of flagellation and motility for infection of Agrobacterium sp. strain H13-3 by flagellotropic bacteriophage 7-7-1. Appl. Environ. Microbiol. 78:7216-7222.
15. Choi Y, Shin H, Lee JH, Ryu S. 2013. Identification and characterization of a novel flagellum-dependent Salmonella-infecting bacteriophage, iEPS5. Appl. Environ. Microbiol. 79:4829-4837.
16. Guerrero-Ferreira RC, Viollier PH, Ely B, Poindexter JS, Georgieva M, Jensen GJ, Wright ER. 2011. Alternative mechanism for bacteriophage adsorption to the motile bacterium Caulobacter crescentus. Proc. Natl. Acad. Sci. U.S.A. 108:9963-9968.
17. Samuel AD, Pitta TP, Ryu WS, Danese PN, Leung EC, Berg HC. 1999. Flagellar determinants of bacterial sensitivity to chi-phage. Proc. Natl. Acad. Sci. U.S.A. 96:9863-9866.
18. Young FE, Smith C, Reilly BE. 1969. Chromosomal location of genes regulating resistance to bacteriophage in Bacillus subtilis. J. Bacteriol. 98:1087-1097.
19. Xia G, Corrigan RM, Winstel V, Goerke C, Grundling A, Peschel A. 2011. Wall teichoic acid-dependent adsorption of staphylococcal siphovirus and myovirus. J. Bacteriol. 193:4006-4009.
20. Raisanen L, Schubert K, Jaakonsaari T, Alatossava T. 2004. Characterization of lipoteichoic acids as Lactobacillus delbrueckii phage receptor components. J. Bacteriol. 186:5529-5532.
21. Gaidelytė A, Cvirkaite-Krupovic V, Daugelavičius R, Bamford JK, Bamford DH. 2006. The entry mechanism of membrane-containing phage Bam35 infecting Bacillus thuringiensis. J. Bacteriol. 188:5925-5934.
22. Jakutytė L, Baptista C, São-José C, Daugelavičius R, Carballido-Lopez R, Tavares P. 2011. Bacteriophage infection in rod-shaped gram-positive bacteria:evidence for a preferential polar route for phage SPP1 entry in Bacillus subtilis. J. Bacteriol. 193:4893-4903.
23. Letellier L, Boulanger P, Plancon L, Jacquot P, Santamaria M. 2004. Main features on tailed phage, host recognition and DNA uptake. Front. Biosci. 9:1228-1339.
24. Randall-Hazelbauer L, Schwartz M. 1973. Isolation of the bacteriophage lambda receptor from Escherichia coli. J. Bacteriol. 116:1436-1446.
25. Klein R, Rossler N, Iro M, Scholz H, Witte A. 2012. Haloarchaeal myovirus phiCh1 harbours a phase variation system for the production of protein variants with distinct cell surface adhesion specificities. Mol. Microbiol. 83:137-150.
26. Klein R, Baranyi U, Rossler N, Greineder B, Scholz H, Witte A. 2002. Natrialba magadii virus phiCh1:first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon. Mol. Microbiol. 45:851-863.
27. Krupovic M, Forterre P, Bamford DH. 2010. Comparative analysis of the mosaic genomes of tailed archaeal viruses and proviruses suggests common themes for virion architecture and assembly with tailed viruses of bacteria. J. Mol. Biol. 397:144-160.
28. Prangishvili D, Arnold HP, Gotz D, Ziese U, Holz I, Kristjansson JK, Zillig W. 1999. A novel virus family, the Rudiviridae:structure, virus-host interactions and genome variability of the Sulfolobus viruses SIRV1 and SIRV2. Genetics 152:1387-1396.
29. Jaubert C, Danioux C, Oberto J, Cortez D, Bize A, Krupovic M, She Q, Forterre P, Prangishvili D, Sezonov G. 2013. Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon. Open Biol. 3:130010. doi:10.1098/rsob.130010.
30. Prangishvili D, Koonin EV, Krupovic M. 2013. Genomics and biology of Rudiviruses, a model for the study of virus-host interactions in Archaea. Biochem. Soc. Trans. 41:443-450.
31. Prangishvili D, Krupovic M. 2012. A new proposed taxon for doublestranded DNA viruses, the order "Ligamenvirales". Arch. Virol. 157:791-795.
32. Steinmetz NF, Bize A, Findlay KC, Lomonossoff GP, Manchester M, Evans DJ, Prangishvili D. 2008. Site-specific and spatially controlled addressability of a new viral nanobuilding block:Sulfolobus islandicus rodshaped virus 2. Adv. Funct. Mater. 18:3478-3486.
33. Bize A, Karlsson EA, Ekefjard K, Quax TE, Pina M, Prevost MC, Forterre P, Tenaillon O, Bernander R, Prangishvili D. 2009. A unique virus release mechanism in the Archaea. Proc. Natl. Acad. Sci. U.S.A. 106:11306-11311.
34. Quax TE, Krupovic M, Lucas S, Forterre P, Prangishvili D. 2010. The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea. Virology 404:1-4.
35. Quax TE, Lucas S, Reimann J, Pehau-Arnaudet G, Prevost MC, Forterre P, Albers SV, Prangishvili D. 2011. Simple and elegant design of a virion egress structure in Archaea. Proc. Natl. Acad. Sci. U.S.A. 108:3354-3359.
36. Brumfield SK, Ortmann AC, Ruigrok V, Suci P, Douglas T, Young MJ. 2009. Particle assembly and ultrastructural features associated with replication of the lytic archaeal virus Sulfolobus turreted icosahedral virus. J. Virol. 83:5964-5970.
37. Snyder JC, Brumfield SK, Peng N, She Q, Young MJ. 2011. Sulfolobus turreted icosahedral virus c92 protein responsible for the formation of pyramid-like cellular lysis structures. J. Virol. 85:6287-6292.
38. Zillig W, Kletzin A, Schleper C, Holz I, Janekovic D, Hain J, Lanzendorfer M, Kristjansson JK. 1994. Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras. Syst. Appl. Microbiol. 16:609-628.
39. Adams MH. 1959. Bacteriophages. Interscience Publishers, Inc., New York, NY.
40. Lassak K, Neiner T, Ghosh A, Klingl A, Wirth R, Albers SV. 2012. Molecular analysis of the crenarchaeal flagellum. Mol. Microbiol. 83:110-124.
41. Kremer JR, Mastronarde DN, McIntosh JR. 1996. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 116:71-76.
42. Frangakis AS, Hegerl R. 2001. Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion. J. Struct. Biol. 135:239-250.
43. Cvirkaite-Krupovic V, Krupovic M, Daugelavičius R, Bamford DH. 2010. Calcium ion-dependent entry of the membrane-containing bacteriophage PM2 into its Pseudoalteromonas host. Virology 405:120-128.
44. Hu B, Margolin W, Molineux IJ, Liu J. 2013. The bacteriophage T7 virion undergoes extensive structural remodeling during infection. Science 339:576-579.
45. Jakutytė L, Lurz R, Baptista C, Carballido-Lopez R, São-José C, Tavares P, Daugelavic?ius R. 2012. First steps of bacteriophage SPP1 entry into Bacillus subtilis. Virology 422:425-434.
46. Kukkaro P, Bamford DH. 2009. Virus-host interactions in environments with a wide range of ionic strengths. Environ. Microbiol. Rep. 1:71-77.
47. Pietilä MK, Atanasova NS, Oksanen HM, Bamford DH. 2013. Modified coat protein forms the flexible spindle-shaped virion of haloarchaeal virus His1. Environ. Microbiol. 15:1674-1686.
48. Bath C, Dyall-Smith ML. 1998. His1, an archaeal virus of the Fuselloviridae family that infects Haloarcula hispanica. J. Virol. 72:9392-9395.
49. Quax TE, Voet M, Sismeiro O, Dillies MA, Jagla B, Coppee JY, Sezonov G, Forterre P, van der Oost J, Lavigne R, Prangishvili D. 2013. Massive activation of archaeal defense genes during viral infection. J. Virol. 87:8419-8428.
50. Lu MJ, Henning U. 1994. Superinfection exclusion by T-even-type coliphages. Trends Microbiol. 2:137-139.
51. Zillig W, Prangishvilli D, Schleper C, Elferink M, Holz I, Albers S, Janekovic D, Gotz D. 1996. Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic Archaea. FEMS Microbiol. Rev. 18:225-236.
52. Albers SV, Driessen AJ. 2005. Analysis of ATPases of putative secretion operons in the thermoacidophilic archaeon Sulfolobus solfataricus. Microbiology 151:763-773.
53. Albers SV, Pohlschroder M. 2009. Diversity of archaeal type IV pilin-like structures. Extremophiles 13:403-410.
54. Albers SV, Meyer BH. 2011. The archaeal cell envelope. Nat. Rev. Microbiol. 9:414-426.